Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.1e-136 490.0 240 100.0
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 9.5e-93 344.0 159 100.0
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.5e-53 213.8 140 69.3
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 5.6e-53 211.8 150 66.7
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 2.1e-52 209.9 120 73.3
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.1e-52 209.9 120 72.5
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.4e-51 207.2 123 69.9
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.4e-51 207.2 154 61.0
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 3.1e-51 206.1 118 73.7
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 3.1e-51 206.1 148 63.5
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 4.0e-51 205.7 118 73.7
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 5.3e-51 205.3 119 71.4
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 9.0e-51 204.5 118 73.7
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 9.0e-51 204.5 119 73.1
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 9.0e-51 204.5 121 73.6
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 1.2e-50 204.1 124 69.4
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.5e-50 203.8 148 62.8
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 2.0e-50 203.4 120 73.3
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 2.0e-50 203.4 154 61.0
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 2.6e-50 203.0 124 69.4
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.6e-50 203.0 153 60.8
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 2.6e-50 203.0 119 73.1
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.6e-50 203.0 119 73.1
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 2.6e-50 203.0 118 72.0
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 3.4e-50 202.6 118 73.7
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 4.5e-50 202.2 131 69.5
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.5e-50 202.2 119 75.6
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.5e-50 202.2 124 73.4
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 4.5e-50 202.2 119 72.3
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 7.6e-50 201.4 116 74.1
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 9.9e-50 201.1 148 60.8
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.3e-49 200.7 119 70.6
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.3e-49 200.7 147 61.9
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.7e-49 200.3 116 73.3
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 2.2e-49 199.9 119 71.4
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 2.2e-49 199.9 154 60.4
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 2.2e-49 199.9 119 72.3
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.9e-49 199.5 124 71.0
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 3.8e-49 199.1 147 60.5
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 3.8e-49 199.1 119 73.1
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 3.8e-49 199.1 118 73.7
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 6.4e-49 198.4 147 62.6
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.4e-48 197.2 124 70.2
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.4e-48 197.2 147 59.9
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.4e-48 197.2 118 71.2
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.9e-48 196.8 126 72.2
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 1.9e-48 196.8 125 72.8
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 7.1e-48 194.9 119 72.3
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 7.1e-48 194.9 148 62.2
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 9.3e-48 194.5 123 68.3
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 9.3e-48 194.5 147 61.2
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 9.3e-48 194.5 118 72.0
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.6e-47 193.7 119 70.6
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.5e-47 192.6 148 60.8
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 3.5e-47 192.6 150 60.7
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 3.5e-47 192.6 119 66.4
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 4.6e-47 192.2 123 65.0
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 6.0e-47 191.8 154 55.8
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 6.0e-47 191.8 123 65.0
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.0e-47 191.8 120 70.0
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 6.0e-47 191.8 119 69.7
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 7.9e-47 191.4 146 59.6
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 7.9e-47 191.4 123 65.0
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.0e-46 191.0 153 56.2
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.3e-46 190.7 116 68.1
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 1.3e-46 190.7 130 63.1
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.3e-46 189.9 121 63.6
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.3e-46 189.9 148 60.1
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 3.9e-46 189.1 120 68.3
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 5.1e-46 188.7 150 59.3
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 6.7e-46 188.3 118 66.1
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 8.7e-46 188.0 115 67.0
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 8.7e-46 188.0 117 67.5
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 8.7e-46 188.0 119 65.5
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.1e-45 187.6 122 64.8
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 1.5e-45 187.2 151 57.0
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 1.9e-45 186.8 149 57.7
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.9e-45 186.8 125 64.8
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 2.5e-45 186.4 144 56.2
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 2.5e-45 186.4 115 67.8
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 4.3e-45 185.7 118 66.1
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 4.3e-45 185.7 127 62.2
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 4.3e-45 185.7 116 66.4
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 4.3e-45 185.7 115 66.1
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 9.6e-45 184.5 144 55.6
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.6e-44 183.7 158 58.2
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.6e-44 183.7 144 54.9
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.6e-44 183.7 144 54.9
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.6e-44 183.7 126 63.5
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.6e-44 183.7 118 70.3
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.1e-44 183.3 147 56.5
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 6.2e-44 181.8 144 54.2
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 6.9e-43 178.3 145 57.2
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 1.5e-42 177.2 107 68.2
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 4.5e-42 175.6 143 55.2
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 3.8e-41 172.6 122 62.3
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 3.8e-41 172.6 145 55.9
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 9.3e-40 167.9 164 48.8
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.8e-38 163.7 134 54.5
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 2.3e-38 163.3 118 61.0
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.5e-37 160.6 121 57.9
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 4.8e-36 155.6 121 62.0
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 4.9e-33 145.6 84 73.8
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 4.2e-32 142.5 146 52.7
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.8e-30 137.1 80 70.0
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 3.3e-29 132.9 114 46.5
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.4e-29 131.7 75 74.7
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 6.9e-27 125.2 120 46.7
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.7e-25 120.6 81 60.5
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.2e-23 114.4 93 47.3
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 3.6e-23 112.8 90 53.3
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 3.6e-23 112.8 89 50.6
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 4.6e-23 112.5 90 52.2
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 1.5e-21 107.5 79 59.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 2.8e-20 103.2 92 48.9
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 3.1e-19 99.8 58 72.4
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 3.1e-19 99.8 99 42.4
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 4.1e-19 99.4 84 52.4
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 5.3e-19 99.0 118 44.9
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 4.5e-18 95.9 147 39.5
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 7.4e-13 78.6 56 60.7
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.7e-12 77.4 69 47.8
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 6.3e-12 75.5 77 49.4
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 2.6e-10 70.1 41 68.3
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 5.0e-09 65.9 41 65.9
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 6.5e-09 65.5 36 75.0
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.2e-07 61.2 68 47.1
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.7e-07 60.1 41 51.2
Os02g0182900 Oryza sativa ssp. japonica HOM05D002499 ORTHO05D002812 6.7e-06 55.5 91 28.6


User provided reference genes

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