Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 4.0e-193 678.3 451 100.0
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 8.6e-79 298.5 451 53.2
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 7.0e-73 278.9 470 45.7
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.0e-71 275.0 461 50.8
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.3e-71 274.6 461 51.0
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.3e-71 274.6 455 49.7
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 1.5e-70 271.2 466 48.1
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 4.3e-70 269.6 467 44.3
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 9.5e-70 268.5 465 50.3
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 9.5e-70 268.5 475 48.6
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 9.5e-70 268.5 474 50.2
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 2.8e-69 266.9 469 48.8
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 8.0e-69 265.4 468 46.4
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.4e-68 264.6 470 44.7
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.4e-68 264.6 465 48.8
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.5e-67 261.2 460 48.0
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.0e-67 260.8 465 48.8
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 9.8e-67 258.5 470 49.6
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 9.8e-67 258.5 461 46.9
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.7e-66 257.7 455 49.9
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 6.4e-66 255.8 474 46.6
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 6.4e-66 255.8 476 41.4
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 6.4e-66 255.8 467 50.1
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 6.4e-66 255.8 466 47.9
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 2.4e-65 253.8 475 48.4
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 5.4e-65 252.7 467 48.0
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 7.0e-65 252.3 480 41.5
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 7.0e-65 252.3 480 41.5
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 7.0e-65 252.3 469 42.0
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.5e-64 250.0 459 50.3
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.3e-63 248.1 466 44.2
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.3e-63 248.1 467 43.7
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.3e-63 248.1 452 47.6
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.7e-63 247.7 461 53.4
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.3e-63 247.3 455 48.8
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 8.6e-63 245.4 462 49.4
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 1.1e-62 245.0 466 49.4
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.5e-62 244.6 463 46.9
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 1.9e-62 244.2 484 39.7
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.9e-62 244.2 450 40.9
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 2.5e-62 243.8 467 46.5
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.2e-61 241.5 447 47.9
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 2.1e-61 240.7 451 41.7
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.8e-61 240.4 441 38.8
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 2.8e-61 240.4 458 48.3
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.1e-60 238.4 464 47.0
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.4e-60 238.0 465 48.2
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 1.8e-60 237.7 465 48.2
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 4.0e-60 236.5 471 43.7
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.0e-59 234.2 456 48.5
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.6e-59 233.8 459 48.1
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.4e-59 233.4 470 47.4
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.4e-59 233.0 459 48.1
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 1.3e-58 231.5 465 47.7
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 8.3e-58 228.8 449 40.1
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 1.1e-57 228.4 460 45.2
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.9e-57 227.6 462 51.1
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 9.2e-57 225.3 458 44.8
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 2.1e-56 224.2 451 47.7
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 4.6e-56 223.0 462 51.3
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 4.6e-56 223.0 462 51.3
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.0e-55 221.9 480 45.2
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.3e-55 221.5 456 48.2
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 5.1e-55 219.5 464 49.6
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 7.3e-54 215.7 448 40.8
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.6e-53 214.5 436 43.8
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 8.1e-53 212.2 453 43.9
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.8e-52 209.1 425 44.0
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 7.6e-51 205.7 461 44.3
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.1e-49 201.8 446 42.8
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.9e-49 201.1 446 46.0
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 4.2e-49 199.9 220 50.5
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 7.8e-48 195.7 443 33.4
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.7e-47 194.5 426 44.4
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.9e-46 191.0 426 42.3
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.9e-46 191.0 437 46.0
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.6e-45 188.0 419 39.9
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 8.1e-45 185.7 129 63.6
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.4e-44 184.9 443 41.1
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 2.4e-44 184.1 442 41.6
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 2.4e-44 184.1 132 62.9
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 2.4e-44 184.1 132 62.9
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 5.3e-44 183.0 312 39.4
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 9.0e-44 182.2 443 41.8
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 9.0e-44 182.2 192 51.0
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.4e-43 180.3 422 35.1
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 3.4e-43 180.3 422 34.8
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 7.6e-43 179.1 134 61.2
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 2.9e-42 177.2 123 61.8
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.9e-42 177.2 155 54.2
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 2.9e-42 177.2 122 64.8
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 3.8e-42 176.8 123 62.6
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 3.8e-42 176.8 123 64.2
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 4.9e-42 176.4 269 39.8
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 4.9e-42 176.4 145 57.2
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 4.9e-42 176.4 123 63.4
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 6.4e-42 176.0 145 57.2
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 6.4e-42 176.0 191 50.3
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 8.4e-42 175.6 443 40.9
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.1e-41 175.3 424 37.7
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.1e-41 175.3 137 57.7
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.1e-41 175.3 193 46.1
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.4e-41 174.9 145 57.2
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.4e-41 174.9 196 50.0
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.4e-41 174.9 188 50.0
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.9e-41 174.5 142 59.9
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.2e-41 173.7 424 40.6
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 3.2e-41 173.7 123 61.0
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 3.2e-41 173.7 423 39.5
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 4.2e-41 173.3 123 63.4
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 5.4e-41 172.9 424 39.2
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 7.1e-41 172.6 138 57.2
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 7.1e-41 172.6 428 34.3
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 9.3e-41 172.2 123 63.4
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 9.3e-41 172.2 140 57.9
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.2e-40 171.8 143 58.7
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.6e-40 171.4 123 59.3
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.6e-40 171.4 123 59.3
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.1e-40 171.0 225 42.7
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 2.1e-40 171.0 144 56.2
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 2.7e-40 170.6 126 58.7
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 2.7e-40 170.6 149 54.4
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 2.7e-40 170.6 142 55.6
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 4.6e-40 169.9 148 56.1
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 4.6e-40 169.9 440 37.0
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 6.0e-40 169.5 151 55.0
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 6.0e-40 169.5 135 57.0
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 7.8e-40 169.1 457 47.0
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 1.3e-39 168.3 122 59.8
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 1.7e-39 167.9 428 43.7
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 3.9e-39 166.8 123 59.3
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 5.1e-39 166.4 136 57.4
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 5.1e-39 166.4 428 43.0
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 6.6e-39 166.0 438 36.3
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 6.6e-39 166.0 123 57.7
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 8.7e-39 165.6 138 56.5
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.1e-38 165.2 122 59.0
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.1e-38 165.2 122 59.0
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.5e-38 164.9 120 59.2
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.5e-38 164.9 120 59.2
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 3.3e-38 163.7 440 40.0
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.3e-38 163.3 123 56.9
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.3e-38 163.3 123 56.9
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 5.6e-38 162.9 161 49.7
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 5.6e-38 162.9 144 55.6
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 7.3e-38 162.5 136 56.6
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 7.3e-38 162.5 434 34.8
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.6e-37 160.2 179 47.5
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 4.8e-37 159.8 123 52.8
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 6.9e-36 156.0 122 56.6
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 9.0e-36 155.6 124 57.3
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 1.3e-26 125.2 397 36.5
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.8e-15 88.2 364 38.7
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 4.1e-12 77.0 55 65.5
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 7.7e-11 72.8 80 51.2
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 7.7e-11 72.8 80 47.5
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 2.2e-10 71.2 381 42.0
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 5.0e-10 70.1 61 57.4
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 3.2e-09 67.4 52 59.6
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 1.6e-08 65.1 72 50.0
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 7.9e-08 62.8 51 56.9
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 3.9e-07 60.5 93 37.6
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 3.9e-07 60.5 93 37.6


User provided reference genes

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