Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.0e-119 431.8 209 100.0
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 4.1e-52 208.8 134 81.3
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 4.6e-51 205.3 98 99.0
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 4.6e-51 205.3 98 99.0
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 4.6e-51 205.3 98 99.0
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 3.0e-34 149.4 83 83.1
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 3.0e-34 149.4 83 83.1
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 5.1e-34 148.7 85 81.2
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 5.1e-34 148.7 85 81.2
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 5.1e-34 148.7 83 83.1
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 6.6e-34 148.3 83 81.9
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 8.7e-34 147.9 83 81.9
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 8.7e-34 147.9 83 81.9
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 1.1e-33 147.5 83 81.9
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-33 147.5 83 83.1
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-33 147.5 83 83.1
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.9e-33 146.7 84 81.0
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 1.9e-33 146.7 83 81.9
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 2.5e-33 146.4 83 81.9
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 2.5e-33 146.4 83 81.9
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 2.5e-33 146.4 83 81.9
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.5e-33 146.4 83 81.9
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 2.5e-33 146.4 99 70.7
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 3.3e-33 146.0 83 81.9
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 3.3e-33 146.0 83 81.9
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 3.3e-33 146.0 83 81.9
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 4.3e-33 145.6 83 80.7
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 4.3e-33 145.6 83 80.7
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 5.6e-33 145.2 83 80.7
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 5.6e-33 145.2 83 80.7
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 5.6e-33 145.2 83 80.7
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 5.6e-33 145.2 84 79.8
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.3e-33 144.8 83 80.7
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.3e-33 144.8 83 80.7
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.3e-33 144.8 83 80.7
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 7.3e-33 144.8 83 80.7
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 9.6e-33 144.4 83 80.7
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 9.6e-33 144.4 83 80.7
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 1.3e-32 144.1 83 78.3
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 1.6e-32 143.7 83 80.7
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 1.6e-32 143.7 83 79.5
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 1.6e-32 143.7 83 79.5
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 2.8e-32 142.9 88 75.0
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 2.8e-32 142.9 88 75.0
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 2.8e-32 142.9 83 78.3
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.6e-32 142.5 83 79.5
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-32 141.7 83 79.5
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 1.1e-31 141.0 83 77.1
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 1.4e-31 140.6 84 77.4
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.8e-31 140.2 83 78.3
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 2.4e-31 139.8 83 79.5
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 2.4e-31 139.8 83 77.1
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 3.1e-31 139.4 83 77.1
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 3.1e-31 139.4 86 74.4
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 4.0e-31 139.0 81 80.2
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 4.0e-31 139.0 81 80.2
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 4.0e-31 139.0 81 80.2
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 6.9e-31 138.3 83 77.1
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 9.0e-31 137.9 81 76.5
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 1.2e-30 137.5 81 77.8
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 1.5e-30 137.1 82 76.8
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 2.0e-30 136.7 84 77.4
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 2.6e-30 136.3 84 76.2
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 2.6e-30 136.3 84 76.2
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 2.6e-30 136.3 84 76.2
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 2.6e-30 136.3 84 76.2
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 2.6e-30 136.3 84 76.2
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 2.6e-30 136.3 84 76.2
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 2.6e-30 136.3 84 76.2
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 3.4e-30 136.0 83 77.1
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 7.6e-30 134.8 86 70.9
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 7.6e-30 134.8 84 76.2
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 9.9e-30 134.4 83 75.9
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.3e-29 134.0 82 75.6
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.7e-29 133.7 83 74.7
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 1.7e-29 133.7 81 77.8
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 2.9e-29 132.9 83 72.3
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 6.4e-29 131.7 83 74.7
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 8.4e-29 131.3 83 72.3
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 1.9e-28 130.2 84 73.8
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 7.1e-28 128.3 76 77.6
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 2.1e-27 126.7 84 72.6
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 7.9e-27 124.8 72 80.6
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 1.0e-26 124.4 68 85.3
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-26 123.2 75 77.3
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 1.5e-25 120.6 89 64.0
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 2.5e-25 119.8 67 82.1
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 3.3e-25 119.4 67 82.1
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 4.8e-24 115.5 89 64.0
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 4.8e-24 115.5 89 64.0
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 4.8e-24 115.5 89 64.0
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 6.2e-24 115.2 73 74.0
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 6.2e-24 115.2 73 74.0
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 6.2e-24 115.2 73 74.0
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 2.4e-23 113.2 65 80.0
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 5.3e-23 112.1 83 68.7
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.2e-21 106.7 59 79.7
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 3.8e-21 105.9 65 75.4
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 4.9e-21 105.5 57 84.2
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 1.1e-20 104.4 63 77.8
SEGI_10972 Sequoiadendron giganteum HOM05D000001 ORTHO05D384737 5.5e-20 102.1 57 84.2
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-19 100.9 58 79.3
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.7e-19 99.8 63 73.0
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.0e-18 97.8 57 78.9
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.3e-16 90.9 55 74.5
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.3e-16 90.9 57 75.4
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 3.7e-16 89.4 53 77.4
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.8e-16 89.0 57 75.4
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 8.2e-16 88.2 50 80.0
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-15 87.4 84 54.8
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.0e-15 85.9 65 69.2
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 2.0e-14 83.6 65 64.6
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.3e-13 80.9 65 63.1
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 8.4e-13 78.2 63 58.7
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 8.4e-13 78.2 46 78.3
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 1.4e-12 77.4 41 82.9
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 1.9e-12 77.0 48 72.9
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.1e-11 73.6 41 78.0
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 1.8e-10 70.5 52 63.5
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 2.3e-10 70.1 59 61.0
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 3.3e-09 66.2 39 74.4
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 7.4e-09 65.1 48 66.7
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.8e-08 63.2 83 53.0
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 5.3e-07 58.9 35 74.3
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 9.0e-07 58.2 32 81.2
SEGI_16622 Sequoiadendron giganteum HOM05D000040 ORTHO05D000759 7.7e-06 55.1 42 59.5


User provided reference genes

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