Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20190 Sequoiadendron giganteum HOM05D007315 ORTHO05D008940 0.0e+00 1635.5 956 100.0
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 1.2e-18 99.8 527 28.5
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 2.0e-16 92.4 582 25.1
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 1.4e-14 86.3 678 26.3
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 5.6e-11 74.3 583 24.0
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 5.6e-11 74.3 565 25.0
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 1.6e-10 72.8 586 23.2
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 2.1e-10 72.4 174 36.2
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 6.2e-10 70.9 580 25.7
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 8.1e-10 70.5 126 38.9
Mapoly0057s0017 Marchantia polymorpha HOM05D025804 ORTHO05D026677 1.1e-09 70.1 108 42.6
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 3.1e-09 68.6 575 23.0
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 8.9e-09 67.0 585 22.6
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 2.6e-08 65.5 587 23.7
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 3.4e-08 65.1 139 30.9
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 9.8e-08 63.5 188 30.9
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 1.3e-07 63.2 102 44.1
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 1.3e-07 63.2 104 38.5
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 1.3e-07 63.2 192 32.8
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 1.7e-07 62.8 568 22.7
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 1.7e-07 62.8 110 37.3
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 2.9e-07 62.0 107 38.3
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 2.9e-07 62.0 137 41.6
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 6.4e-07 60.8 142 31.7
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 6.4e-07 60.8 142 31.7
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 6.4e-07 60.8 109 39.4
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 6.4e-07 60.8 163 36.2
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 8.3e-07 60.5 145 37.2
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 1.1e-06 60.1 109 39.4
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 1.1e-06 60.1 112 39.3
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 1.4e-06 59.7 178 32.0
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 1.4e-06 59.7 149 32.2
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 1.9e-06 59.3 56 53.6
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.9e-06 59.3 463 23.3
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.9e-06 59.3 463 24.2
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 1.9e-06 59.3 595 23.9
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 3.2e-06 58.5 562 23.3
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 3.2e-06 58.5 92 42.4
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 4.1e-06 58.2 142 35.2
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 4.1e-06 58.2 179 33.0
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 4.1e-06 58.2 138 34.1
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 4.1e-06 58.2 165 31.5
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 5.4e-06 57.8 156 34.0
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 5.4e-06 57.8 148 31.1
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 5.4e-06 57.8 148 31.1
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 5.4e-06 57.8 102 38.2
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 5.4e-06 57.8 107 37.4
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 5.4e-06 57.8 175 33.1


User provided reference genes

Program Settings