Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20114 Sequoiadendron giganteum HOM05D003195 ORTHO05D003773 5.4e-68 260.8 122 100.0
COL.COLO4_09344 Corchorus olitorius HOM05D003195 ORTHO05D003773 1.9e-25 119.4 77 74.0
Duzib133G1273 Durio zibethinus HOM05D003195 ORTHO05D003773 1.2e-22 110.2 67 74.6
AagrBONN_evm.TU.Sc2ySwM_344.2273 Anthoceros agrestis HOM05D003195 ORTHO05D003773 2.0e-22 109.4 67 71.6
THA.LOC104805570 Tarenaya hassleriana HOM05D003195 ORTHO05D003773 3.4e-22 108.6 59 83.1
SMO174G0159 Selaginella moellendorffii HOM05D003195 ORTHO05D003773 5.8e-22 107.8 61 77.0
TWI74G1558 Tripterygium wilfordii HOM05D003195 ORTHO05D003773 5.8e-22 107.8 67 73.1
Dinv33951 Davidia involucrata HOM05D003195 ORTHO05D003773 9.9e-22 107.1 67 71.6
Manes.02G069400 Manihot esculenta HOM05D003195 ORTHO05D003773 1.7e-21 106.3 67 71.6
TAR622G1191 Trochodendron aralioides HOM05D003195 ORTHO05D003773 1.7e-21 106.3 67 71.6
GSVIVG01031014001 Vitis vinifera HOM05D003195 ORTHO05D003773 1.7e-21 106.3 67 73.1
Dinv34818 Davidia involucrata HOM05D003195 ORTHO05D003773 2.2e-21 105.9 67 71.6
QL02p051116 Quercus lobata HOM05D003195 ORTHO05D003773 2.2e-21 105.9 67 71.6
ATR1125G011 Amborella trichopoda HOM05D003195 ORTHO05D003773 2.9e-21 105.5 67 71.6
Cc07_g08760 Coffea canephora HOM05D003195 ORTHO05D003773 2.9e-21 105.5 61 77.0
GSVIVG01008308001 Vitis vinifera HOM05D003195 ORTHO05D003773 2.9e-21 105.5 67 70.1
Sc10g0001110 Simmondsia chinensis HOM05D003195 ORTHO05D003773 3.8e-21 105.1 65 75.4
Gohir.A08G053100 Gossypium hirsutum HOM05D003195 ORTHO05D003773 4.9e-21 104.8 67 71.6
Gohir.D08G062700 Gossypium hirsutum HOM05D003195 ORTHO05D003773 4.9e-21 104.8 67 71.6
Gorai.004G064900 Gossypium raimondii HOM05D003195 ORTHO05D003773 4.9e-21 104.8 67 71.6
Sc10g0009440 Simmondsia chinensis HOM05D003195 ORTHO05D003773 4.9e-21 104.8 67 70.1
TAR629G0768 Trochodendron aralioides HOM05D003195 ORTHO05D003773 4.9e-21 104.8 63 74.6
MELO3C008142.2 Cucumis melo HOM05D003195 ORTHO05D003773 6.4e-21 104.4 61 75.4
Migut.L00325 Erythranthe guttata HOM05D003195 ORTHO05D003773 6.4e-21 104.4 61 77.0
MD09G1253200 Malus domestica HOM05D003195 ORTHO05D003773 6.4e-21 104.4 67 71.6
PGR083G2458 Punica granatum HOM05D003195 ORTHO05D003773 6.4e-21 104.4 65 70.8
THA.LOC104823859 Tarenaya hassleriana HOM05D003195 ORTHO05D003773 6.4e-21 104.4 59 79.7
HPP92_019813 Vanilla planifolia HOM05D003195 ORTHO05D003773 6.4e-21 104.4 67 70.1
MSTRG.23578 Avicennia marina HOM05D003195 ORTHO05D003773 8.4e-21 104.0 65 72.3
CSS0000453 Camellia sinensis var. sinensis HOM05D003195 ORTHO05D003773 8.4e-21 104.0 67 68.7
ClCG11G007870 Citrullus lanatus HOM05D003195 ORTHO05D003773 8.4e-21 104.0 61 75.4
Dinv15690 Davidia involucrata HOM05D003195 ORTHO05D003773 8.4e-21 104.0 67 68.7
Prupe.3G143000 Prunus persica HOM05D003195 ORTHO05D003773 8.4e-21 104.0 67 71.6
MSTRG.3567 Avicennia marina HOM05D003195 ORTHO05D003773 1.1e-20 103.6 65 72.3
DCAR_015145 Daucus carota HOM05D003195 ORTHO05D003773 1.1e-20 103.6 67 67.2
Lsat_1_v5_gn_3_79640 Lactuca sativa HOM05D003195 ORTHO05D003773 1.1e-20 103.6 61 77.0
Lsat_1_v5_gn_3_79660 Lactuca sativa HOM05D003195 ORTHO05D003773 1.1e-20 103.6 61 77.0
Ciclev10012627m.g Citrus clementina HOM05D003195 ORTHO05D003773 1.4e-20 103.2 59 79.7
Eucgr.F02502 Eucalyptus grandis HOM05D003195 ORTHO05D003773 1.4e-20 103.2 63 73.0
Nn3g17887 Nelumbo nucifera HOM05D003195 ORTHO05D003773 1.4e-20 103.2 67 68.7
RcHm_v2.0_Chr2g0126081 Rosa chinensis HOM05D003195 ORTHO05D003773 1.4e-20 103.2 67 71.6
SalBow3G2560 Salvia bowleyana HOM05D003195 ORTHO05D003773 1.4e-20 103.2 65 73.8
Atru.chr1.1671 Acer truncatum HOM05D003195 ORTHO05D003773 1.9e-20 102.8 61 77.0
Migut.H00222 Erythranthe guttata HOM05D003195 ORTHO05D003773 1.9e-20 102.8 61 75.4
Nitab4.5_0002906g0150 Nicotiana tabacum HOM05D003195 ORTHO05D003773 1.9e-20 102.8 67 67.2
Solyc03g119350.3 Solanum lycopersicum HOM05D003195 ORTHO05D003773 1.9e-20 102.8 67 65.7
Sopen03g038220 Solanum pennellii HOM05D003195 ORTHO05D003773 1.9e-20 102.8 67 65.7
PGSC0003DMG401005726 Solanum tuberosum HOM05D003195 ORTHO05D003773 1.9e-20 102.8 67 65.7
VMungo0251G3612 Vigna mungo HOM05D003195 ORTHO05D003773 1.9e-20 102.8 65 69.2
MSTRG.15299 Avicennia marina HOM05D003195 ORTHO05D003773 2.4e-20 102.4 65 72.3
CsaV3_2G033720 Cucumis sativus L. HOM05D003195 ORTHO05D003773 2.4e-20 102.4 67 68.7
FvH4_7g13690 Fragaria vesca HOM05D003195 ORTHO05D003773 2.4e-20 102.4 67 71.6
CANSAT78G0992 Cannabis sativa HOM05D003195 ORTHO05D003773 3.2e-20 102.1 67 70.1
Cpa.g.c35056 Carica papaya HOM05D003195 ORTHO05D003773 3.2e-20 102.1 65 69.2
COL.COLO4_04899 Corchorus olitorius HOM05D003195 ORTHO05D003773 3.2e-20 102.1 60 73.3
SGA_v2.0_scaffold278G46750 Striga asiatica HOM05D003195 ORTHO05D003773 3.2e-20 102.1 65 72.3
TPR.G32698 Trifolium pratense HOM05D003195 ORTHO05D003773 3.2e-20 102.1 65 69.2
Aa31LG2G3460 Aethionema arabicum HOM05D003195 ORTHO05D003773 5.4e-20 101.3 59 78.0
arahy.Tifrunner.gnm1.ann1.DJ6Y7L Arachis hypogaea HOM05D003195 ORTHO05D003773 5.4e-20 101.3 65 66.2
EL10Ac5g11462 Beta vulgaris HOM05D003195 ORTHO05D003773 5.4e-20 101.3 63 69.8
AUR62025824 Chenopodium quinoa HOM05D003195 ORTHO05D003773 5.4e-20 101.3 63 69.8
AUR62029882 Chenopodium quinoa HOM05D003195 ORTHO05D003773 5.4e-20 101.3 63 69.8
Thecc.04G132800 Theobroma cacao HOM05D003195 ORTHO05D003773 5.4e-20 101.3 67 68.7
Aqoxy3G00261 Aquilegia oxysepala HOM05D003195 ORTHO05D003773 7.1e-20 100.9 63 73.0
Lsat_1_v5_gn_2_12241 Lactuca sativa HOM05D003195 ORTHO05D003773 7.1e-20 100.9 63 66.7
Sabra15G0039600 Salix brachista HOM05D003195 ORTHO05D003773 7.1e-20 100.9 65 67.7
CDE06G0743 Ceratophyllum demersum HOM05D003195 ORTHO05D003773 9.3e-20 100.5 67 68.7
Cc00_g11610 Coffea canephora HOM05D003195 ORTHO05D003773 9.3e-20 100.5 67 65.7
Gohir.A09G048600 Gossypium hirsutum HOM05D003195 ORTHO05D003773 9.3e-20 100.5 65 67.7
Gohir.D09G049700 Gossypium hirsutum HOM05D003195 ORTHO05D003773 9.3e-20 100.5 65 67.7
Gorai.006G060100 Gossypium raimondii HOM05D003195 ORTHO05D003773 9.3e-20 100.5 65 67.7
Thecc.03G037100 Theobroma cacao HOM05D003195 ORTHO05D003773 9.3e-20 100.5 65 67.7
TAR371G1046 Trochodendron aralioides HOM05D003195 ORTHO05D009168 9.3e-20 100.5 67 70.1
Ah.02g114990 Amaranthus hybridus HOM05D003195 ORTHO05D003773 1.2e-19 100.1 63 66.7
Haze_18694 Corylus avellana HOM05D003195 ORTHO05D003773 1.2e-19 100.1 65 66.2
Duzib205G2069 Durio zibethinus HOM05D003195 ORTHO05D003773 1.2e-19 100.1 65 67.7
Manes.05G114500 Manihot esculenta HOM05D003195 ORTHO05D003773 1.2e-19 100.1 65 67.7
Mapoly0461s0001 Marchantia polymorpha HOM05D003195 ORTHO05D003773 1.2e-19 100.1 61 70.5
Nn4g23892 Nelumbo nucifera HOM05D003195 ORTHO05D003773 1.2e-19 100.1 67 68.7
Pp3c23_12480 Physcomitrium patens HOM05D003195 ORTHO05D003773 1.2e-19 100.1 61 77.0
QL10p025608 Quercus lobata HOM05D003195 ORTHO05D003773 1.2e-19 100.1 65 66.2
SalBow5G0703 Salvia bowleyana HOM05D003195 ORTHO05D003773 1.2e-19 100.1 65 69.2
Hund16160 Selenicereus undatus HOM05D003195 ORTHO05D003773 1.2e-19 100.1 61 75.4
CDE12G0109 Ceratophyllum demersum HOM05D003195 ORTHO05D003773 1.6e-19 99.8 67 67.2
Ca_08074_v3 Cicer arietinum L. HOM05D003195 ORTHO05D003773 1.6e-19 99.8 67 70.1
MBI16_g23457_MAGBIO Magnolia biondii HOM05D003195 ORTHO05D003773 1.6e-19 99.8 67 67.2
Oeu050375.1 Olea europaea HOM05D003195 ORTHO05D003773 1.6e-19 99.8 61 75.4
PSO063G5893 Papaver somniferum HOM05D003195 ORTHO05D003773 1.6e-19 99.8 65 72.3
PSO782G3507 Papaver somniferum HOM05D003195 ORTHO05D003773 1.6e-19 99.8 65 72.3
Hund02384 Selenicereus undatus HOM05D003195 ORTHO05D003773 1.6e-19 99.8 67 65.7
CiPaw.16G087700 Carya illinoinensis HOM05D003195 ORTHO05D003773 2.1e-19 99.4 65 66.2
HanXRQChr06g0184701 Helianthus annuus HOM05D003195 ORTHO05D003773 2.1e-19 99.4 63 65.1
Lalb_Chr05g0222431 Lupinus albus HOM05D003195 ORTHO05D003773 2.1e-19 99.4 65 66.2
MD06G1217400 Malus domestica HOM05D003195 ORTHO05D003773 2.1e-19 99.4 65 66.2
Potri.004G098800 Populus trichocarpa HOM05D003195 ORTHO05D003773 2.1e-19 99.4 63 71.4
Prupe.5G222600 Prunus persica HOM05D003195 ORTHO05D003773 2.1e-19 99.4 65 67.7
Sed0004624 Sechium edule HOM05D003195 ORTHO05D003773 2.1e-19 99.4 67 65.7
Solyc03g034250.4 Solanum lycopersicum HOM05D003195 ORTHO05D003773 2.1e-19 99.4 61 73.8
Sopen03g007030 Solanum pennellii HOM05D003195 ORTHO05D003773 2.1e-19 99.4 61 73.8
PGSC0003DMG400024377 Solanum tuberosum HOM05D003195 ORTHO05D003773 2.1e-19 99.4 61 73.8
PGSC0003DMG403019589 Solanum tuberosum HOM05D003195 ORTHO05D003773 2.1e-19 99.4 61 73.8
Actinidia15887 Actinidia chinensis HOM05D003195 ORTHO05D003773 2.7e-19 99.0 67 67.2
Ah.16g101720 Amaranthus hybridus HOM05D003195 ORTHO05D003773 2.7e-19 99.0 65 70.8
CiPaw.03G062200 Carya illinoinensis HOM05D003195 ORTHO05D003773 2.7e-19 99.0 61 73.8
DCAR_021447 Daucus carota HOM05D003195 ORTHO05D003773 2.7e-19 99.0 63 71.4
Eucgr.B00733 Eucalyptus grandis HOM05D003195 ORTHO05D003773 2.7e-19 99.0 65 67.7
Lj1g0004565 Lotus japonicus HOM05D003195 ORTHO05D003773 2.7e-19 99.0 67 67.2
CAN.G82.4 Capsicum annuum HOM05D003195 ORTHO05D003773 3.5e-19 98.6 61 73.8
MELO3C017317.2 Cucumis melo HOM05D003195 ORTHO05D003773 3.5e-19 98.6 65 66.2
CsaV3_1G003940 Cucumis sativus L. HOM05D003195 ORTHO05D003773 3.5e-19 98.6 65 66.2
Glyma.18G296200 Glycine max HOM05D003195 ORTHO05D003773 3.5e-19 98.6 67 68.7
MBI16_g05558_MAGBIO Magnolia biondii HOM05D003195 ORTHO05D003773 3.5e-19 98.6 61 72.1
Nitab4.5_0002207g0030 Nicotiana tabacum HOM05D003195 ORTHO05D003773 3.5e-19 98.6 61 73.8
Peaxi162Scf00394g00718 Petunia axillaris HOM05D003195 ORTHO05D003773 3.5e-19 98.6 65 64.6
Phvul.008G006400 Phaseolus vulgaris HOM05D003195 ORTHO05D003773 3.5e-19 98.6 67 68.7
RcHm_v2.0_Chr7g0185671 Rosa chinensis HOM05D003195 ORTHO05D003773 3.5e-19 98.6 61 70.5
Sed0022160 Sechium edule HOM05D003195 ORTHO05D003773 3.5e-19 98.6 65 66.2
Ciclev10024177m.g Citrus clementina HOM05D003195 ORTHO05D003773 4.6e-19 98.2 65 66.2
Glyma.08G366100 Glycine max HOM05D003195 ORTHO05D003773 4.6e-19 98.2 67 68.7
HanXRQChr12g0375801 Helianthus annuus HOM05D003195 ORTHO05D003773 4.6e-19 98.2 61 72.1
Nitab4.5_0001382g0030 Nicotiana tabacum HOM05D003195 ORTHO05D003773 4.6e-19 98.2 61 73.8
Sabra04G0081000 Salix brachista HOM05D003195 ORTHO05D003773 4.6e-19 98.2 67 67.2
ClCG06G014710 Citrullus lanatus HOM05D003195 ORTHO05D003773 6.0e-19 97.8 60 70.0
ECA238G4561 Erigeron canadensis HOM05D003195 ORTHO05D003773 6.0e-19 97.8 63 65.1
unitig_32.g10652 Utricularia gibba HOM05D003195 ORTHO05D003773 6.0e-19 97.8 61 70.5
Thhalv10019077m.g Eutrema salsugineum HOM05D003195 ORTHO05D003773 7.9e-19 97.4 59 74.6
FvH4_5g11892 Fragaria vesca HOM05D003195 ORTHO05D003773 7.9e-19 97.4 65 66.2
FAN04G2107 Fragaria x ananassa HOM05D003195 ORTHO05D003773 7.9e-19 97.4 65 66.2
FAN08G2993 Fragaria x ananassa HOM05D003195 ORTHO05D003773 7.9e-19 97.4 65 66.2
FAN13G1862 Fragaria x ananassa HOM05D003195 ORTHO05D003773 7.9e-19 97.4 65 66.2
FAN18G4034 Fragaria x ananassa HOM05D003195 ORTHO05D003773 7.9e-19 97.4 62 67.7
FAN18G4239 Fragaria x ananassa HOM05D003195 ORTHO05D003773 7.9e-19 97.4 62 67.7
Glyma.05G237900 Glycine max HOM05D003195 ORTHO05D003773 7.9e-19 97.4 65 67.7
Medtr7g082140 Medicago truncatula HOM05D003195 ORTHO05D003773 7.9e-19 97.4 67 67.2
Psat3g098560 Pisum sativum HOM05D003195 ORTHO05D003773 7.9e-19 97.4 67 67.2
TPR.G29085 Trifolium pratense HOM05D003195 ORTHO05D003773 7.9e-19 97.4 67 67.2
AT1G67060 Arabidopsis thaliana HOM05D003195 ORTHO05D003773 1.0e-18 97.1 59 74.6
Sp5g21990 Schrenkiella parvula HOM05D003195 ORTHO05D003773 1.0e-18 97.1 59 74.6
AL2G25410 Arabidopsis lyrata HOM05D003195 ORTHO05D003773 1.3e-18 96.7 59 74.6
Carub.0002s1335 Capsella rubella HOM05D003195 ORTHO05D003773 1.3e-18 96.7 59 74.6
Lalb_Chr10g0091281 Lupinus albus HOM05D003195 ORTHO05D003773 1.3e-18 96.7 67 65.7
BcaB05g24233 Brassica carinata HOM05D003195 ORTHO05D003773 1.7e-18 96.3 59 74.6
MD17G1245200 Malus domestica HOM05D003195 ORTHO05D003773 1.7e-18 96.3 61 73.8
PGSC0003DMG400026391 Solanum tuberosum HOM05D003195 ORTHO05D003773 2.3e-18 95.9 65 63.1
EL10Ac2g04559 Beta vulgaris HOM05D003195 ORTHO05D003773 3.0e-18 95.5 59 76.3
Rhsim10G0068000 Rhododendron simsii HOM05D003195 ORTHO05D003773 3.0e-18 95.5 61 72.1
BcaC03g14792 Brassica carinata HOM05D003195 ORTHO05D003773 5.1e-18 94.7 59 72.9
A02p13890 Brassica napus HOM05D003195 ORTHO05D003773 5.1e-18 94.7 59 72.9
C02p22390 Brassica napus HOM05D003195 ORTHO05D003773 5.1e-18 94.7 59 72.9
BolC2t08393H Brassica oleracea HOM05D003195 ORTHO05D003773 5.1e-18 94.7 59 72.9
BraA02t06450Z Brassica rapa HOM05D003195 ORTHO05D003773 5.1e-18 94.7 59 72.9
CAN.G625.28 Capsicum annuum HOM05D003195 ORTHO05D003773 5.1e-18 94.7 65 60.0
CARHR059480 Cardamine hirsuta HOM05D003195 ORTHO05D003773 6.6e-18 94.4 59 72.9
Ciclev10023924m.g Citrus clementina HOM05D003195 ORTHO05D003773 6.6e-18 94.4 58 70.7
Peaxi162Scf00015g01043 Petunia axillaris HOM05D003195 ORTHO05D003773 6.6e-18 94.4 78 56.4
Hma1.2p1_1109F.1_g258080 Hydrangea macrophylla HOM05D003195 ORTHO05D003773 1.1e-17 93.6 68 66.2
Solyc02g086110.3 Solanum lycopersicum HOM05D003195 ORTHO05D003773 1.1e-17 93.6 65 61.5
Sopen02g030800 Solanum pennellii HOM05D003195 ORTHO05D003773 1.1e-17 93.6 65 61.5
Zm00001eb012780 Zea mays HOM05D003195 ORTHO05D003773 1.5e-17 93.2 59 71.2
MD06G1217500 Malus domestica HOM05D003195 ORTHO05D003773 1.9e-17 92.8 65 61.5
MD14G1227700 Malus domestica HOM05D003195 ORTHO05D003773 1.9e-17 92.8 65 61.5
Prupe.5G222700 Prunus persica HOM05D003195 ORTHO05D003773 1.9e-17 92.8 65 61.5
RcHm_v2.0_Chr7g0185681 Rosa chinensis HOM05D003195 ORTHO05D003773 2.5e-17 92.4 65 61.5
Os02g0221600 Oryza sativa ssp. japonica HOM05D003195 ORTHO05D003773 3.3e-17 92.0 59 71.2
VMungo1383G2772 Vigna mungo HOM05D003195 ORTHO05D003773 3.3e-17 92.0 67 64.2
Zm00001eb397400 Zea mays HOM05D003195 ORTHO05D003773 4.3e-17 91.7 59 71.2
FAN01G0506 Fragaria x ananassa HOM05D003195 ORTHO05D003773 5.6e-17 91.3 85 56.5
FAN03G1656 Fragaria x ananassa HOM05D003195 ORTHO05D003773 5.6e-17 91.3 85 56.5
FAN06G0873 Fragaria x ananassa HOM05D003195 ORTHO05D003773 5.6e-17 91.3 85 56.5
Atru.chr9.863 Acer truncatum HOM05D003195 ORTHO05D003773 9.6e-17 90.5 65 66.2
CDE08G0160 Ceratophyllum demersum HOM05D003195 ORTHO05D003773 1.3e-16 90.1 67 59.7
FvH4_5g11891 Fragaria vesca HOM05D003195 ORTHO05D003773 2.8e-16 89.0 65 58.5
FAN06G2942 Fragaria x ananassa HOM05D003195 ORTHO05D003773 6.2e-16 87.8 77 58.4
arahy.Tifrunner.gnm1.ann1.8L3LRB Arachis hypogaea HOM05D003195 ORTHO05D003773 1.4e-15 86.7 58 63.8
Haze_14162 Corylus avellana HOM05D003195 ORTHO05D003773 1.4e-15 86.7 105 44.8
arahy.Tifrunner.gnm1.ann1.FNQ425 Arachis hypogaea HOM05D003195 ORTHO05D003773 4.0e-15 85.1 58 62.1
TWI53G0997 Tripterygium wilfordii HOM05D003195 ORTHO05D003773 1.3e-10 70.1 43 76.7
Lj2A441T50 Lonicera japonica HOM05D003195 ORTHO05D003773 2.5e-09 65.9 37 83.8
vmacro05549 Vaccinium macrocarpon HOM05D003195 ORTHO05D003773 2.5e-09 65.9 37 83.8
Gohir.D04G037700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 4.3e-09 65.1 32 90.6
Peaxi162Scf00104g01110 Petunia axillaris HOM05D003195 ORTHO05D003773 5.6e-09 64.7 33 90.9
Lj5A150T49 Lonicera japonica HOM05D003195 ORTHO05D003773 1.6e-08 63.2 35 80.0
Lj4A191T46 Lonicera japonica HOM05D003195 ORTHO05D003773 2.1e-08 62.8 33 84.8


User provided reference genes

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