Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.1e-69 265.0 135 100.0
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 7.6e-39 164.1 94 85.1
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-18 97.1 81 60.5
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-18 97.1 81 60.5
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 3.3e-18 95.5 126 44.4
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 7.4e-18 94.4 82 56.1
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.6e-17 93.2 68 64.7
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 3.6e-17 92.0 97 49.5
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 3.6e-17 92.0 68 63.2
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 4.8e-17 91.7 71 62.0
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 8.1e-17 90.9 68 63.2
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 1.1e-16 90.5 78 57.7
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.8e-16 89.7 69 62.3
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.8e-16 89.7 64 64.1
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 2.4e-16 89.4 91 51.6
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 2.4e-16 89.4 75 57.3
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 3.1e-16 89.0 79 54.4
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 4.0e-16 88.6 75 56.0
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 4.0e-16 88.6 68 60.3
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 4.0e-16 88.6 61 67.2
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 5.3e-16 88.2 79 54.4
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 5.3e-16 88.2 75 57.3
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 5.3e-16 88.2 63 65.1
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 6.9e-16 87.8 76 56.6
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 9.0e-16 87.4 63 63.5
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 1.2e-15 87.0 79 54.4
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.2e-15 87.0 82 53.7
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.5e-15 86.7 75 54.7
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 2.0e-15 86.3 63 65.1
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 3.4e-15 85.5 63 60.3
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 3.4e-15 85.5 89 51.7
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 3.4e-15 85.5 81 51.9
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.4e-15 85.5 68 58.8
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 3.4e-15 85.5 68 58.8
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 4.5e-15 85.1 77 54.5
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 4.5e-15 85.1 93 47.3
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 4.5e-15 85.1 65 60.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 5.8e-15 84.7 77 54.5
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 5.8e-15 84.7 81 51.9
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 5.8e-15 84.7 69 56.5
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.8e-15 84.7 68 58.8
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 7.6e-15 84.3 95 46.3
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 7.6e-15 84.3 79 53.2
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 7.6e-15 84.3 79 53.2
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 1.3e-14 83.6 63 60.3
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.3e-14 83.6 102 47.1
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.3e-14 83.6 69 55.1
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.7e-14 83.2 81 51.9
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 1.7e-14 83.2 80 51.2
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.7e-14 83.2 61 62.3
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 2.2e-14 82.8 80 50.0
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 2.2e-14 82.8 67 56.7
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.2e-14 82.8 68 57.4
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.2e-14 82.8 95 45.3
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.8e-14 82.0 63 60.3
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 4.9e-14 81.6 102 45.1
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 6.4e-14 81.3 80 51.2
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 6.4e-14 81.3 61 65.6
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.1e-13 80.5 63 58.7
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 1.1e-13 80.5 81 49.4
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.1e-13 80.5 68 54.4
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 1.1e-13 80.5 95 46.3
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.4e-13 80.1 61 62.3
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.4e-13 80.1 90 45.6
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.4e-13 80.1 68 54.4
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.4e-13 80.1 87 48.3
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.9e-13 79.7 80 50.0
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.9e-13 79.7 75 52.0
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 2.4e-13 79.3 70 54.3
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 3.2e-13 79.0 68 52.9
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 4.2e-13 78.6 61 60.7
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 5.5e-13 78.2 61 60.7
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 5.5e-13 78.2 80 48.8
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 5.5e-13 78.2 69 53.6
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 5.5e-13 78.2 68 52.9
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 5.5e-13 78.2 80 47.5
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 5.5e-13 78.2 70 52.9
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 7.1e-13 77.8 67 53.7
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.2e-12 77.0 70 54.3
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 1.2e-12 77.0 70 54.3
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.6e-12 76.6 94 43.6
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.6e-12 76.6 67 56.7
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.6e-12 76.6 67 56.7
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 2.1e-12 76.3 67 52.2
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 2.7e-12 75.9 80 50.0
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 2.7e-12 75.9 56 62.5
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 4.6e-12 75.1 61 57.4
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 4.6e-12 75.1 75 52.0
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 6.0e-12 74.7 96 42.7
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 7.9e-12 74.3 60 58.3
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.0e-11 73.9 61 54.1
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.0e-11 73.9 42 85.7
SEGI_35774 Sequoiadendron giganteum HOM05D000361 ORTHO05D005006 1.0e-11 73.9 42 85.7
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.3e-11 73.6 81 50.6
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.3e-11 73.6 128 39.1
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.8e-11 73.2 62 56.5
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.3e-11 72.8 74 48.6
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.3e-11 72.8 74 48.6
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 2.3e-11 72.8 95 41.1
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 3.0e-11 72.4 81 49.4
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 3.9e-11 72.0 61 52.5
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 3.9e-11 72.0 73 49.3
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 6.7e-11 71.2 96 42.7
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 8.7e-11 70.9 61 52.5
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.5e-10 70.1 76 44.7
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.5e-10 70.1 76 44.7
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.5e-10 70.1 67 49.3
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.5e-10 70.1 61 50.8
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.9e-10 69.7 70 48.6
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 2.5e-10 69.3 70 47.1
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 2.5e-10 69.3 70 47.1
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 4.3e-10 68.6 66 54.5
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 4.3e-10 68.6 69 47.8
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.3e-09 67.0 66 48.5
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.0e-06 57.4 82 41.5


User provided reference genes

Program Settings