Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 0.0e+00 1734.9 841 100.0
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.6e-299 1031.9 506 99.4
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 4.8e-192 675.6 787 46.8
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 2.5e-180 636.7 780 44.4
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 9.4e-180 634.8 782 45.0
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 1.2e-179 634.4 782 44.5
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 4.7e-179 632.5 782 43.4
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 8.0e-179 631.7 788 44.8
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 1.4e-178 630.9 781 45.1
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 5.2e-178 629.0 779 44.8
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 5.2e-178 629.0 786 45.3
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 1.5e-177 627.5 783 44.6
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 4.4e-177 625.9 777 44.5
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 5.7e-177 625.5 777 44.0
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 5.7e-177 625.5 784 44.6
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 4.8e-176 622.5 787 44.1
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 1.1e-175 621.3 780 43.7
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 1.8e-175 620.5 788 43.9
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 9.1e-175 618.2 789 44.0
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 1.2e-174 617.8 779 43.6
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.6e-174 617.5 777 43.9
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 4.5e-174 615.9 789 43.7
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.7e-173 614.0 785 43.2
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 6.5e-173 612.1 776 43.7
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 4.2e-172 609.4 780 44.1
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 9.4e-172 608.2 793 43.1
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 1.4e-170 604.4 786 42.9
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 8.8e-170 601.7 773 41.5
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 1.5e-169 600.9 799 43.2
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 2.6e-169 600.1 784 43.2
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 9.8e-169 598.2 799 41.2
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 1.3e-168 597.8 779 43.1
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.2e-168 597.0 792 42.8
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 3.7e-168 596.3 783 42.9
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 1.4e-167 594.3 782 42.6
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.8e-167 594.0 755 44.1
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.8e-167 594.0 790 42.7
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 5.4e-167 592.4 787 42.8
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 2.0e-166 590.5 778 43.3
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.0e-166 590.5 787 42.7
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 1.0e-165 588.2 801 41.4
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 1.0e-165 588.2 788 42.3
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 1.0e-165 588.2 784 43.0
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 1.3e-165 587.8 824 40.7
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 1.3e-165 587.8 785 42.7
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 1.3e-165 587.8 777 41.7
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 1.7e-165 587.4 784 41.8
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 1.7e-165 587.4 794 42.1
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 3.8e-165 586.3 783 42.5
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 5.0e-165 585.9 755 43.6
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 6.6e-165 585.5 761 43.5
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 6.6e-165 585.5 858 40.1
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 1.1e-164 584.7 821 40.6
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 3.3e-164 583.2 795 41.8
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 3.3e-164 583.2 784 41.2
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 4.2e-164 582.8 787 41.9
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 1.6e-163 580.9 782 41.8
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 6.1e-163 578.9 782 40.7
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 1.0e-162 578.2 783 42.0
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 2.3e-162 577.0 784 41.3
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 2.3e-162 577.0 786 41.5
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 2.3e-162 577.0 789 42.3
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 2.3e-162 577.0 776 42.7
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 4.0e-162 576.2 778 41.5
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 6.8e-162 575.5 780 40.6
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 2.0e-161 573.9 778 41.6
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 2.0e-161 573.9 786 41.6
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 2.6e-161 573.5 784 41.2
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 4.4e-161 572.8 783 40.0
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 9.8e-161 571.6 783 41.9
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 3.7e-160 569.7 781 41.5
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 2.0e-158 563.9 779 42.1
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 1.0e-157 561.6 782 41.4
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 1.7e-157 560.8 778 42.0
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 2.1e-155 553.9 788 40.7
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 2.8e-155 553.5 760 40.3
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 2.8e-155 553.5 654 45.4
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 2.0e-153 547.4 774 40.4
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 4.4e-153 546.2 791 39.8
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 2.2e-152 543.9 778 39.8
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 4.6e-150 536.2 824 41.5
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 2.3e-149 533.9 776 39.2
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.8e-146 524.2 775 39.7
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 2.3e-146 523.9 790 39.2
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 5.2e-146 522.7 836 37.6
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 8.3e-144 515.4 645 44.2
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 3.2e-143 513.5 682 41.9
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 2.5e-140 503.8 782 39.9
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 4.7e-139 499.6 743 39.4
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 8.1e-139 498.8 859 36.7
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 6.4e-136 489.2 782 38.5
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 7.3e-132 475.7 830 36.5
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.1e-106 390.6 570 40.7
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 5.3e-106 389.8 571 42.2
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 9.3e-103 379.0 792 32.2
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 6.1e-94 349.7 780 32.2
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 3.0e-93 347.4 522 39.3
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.0e-88 330.1 160 99.4
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.1e-87 328.9 427 42.4
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 1.4e-87 328.6 464 41.4
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 4.8e-83 313.5 435 41.1
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 8.8e-77 292.7 348 44.3
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 7.7e-73 279.6 131 99.2
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 1.6e-62 245.4 284 44.0
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 2.7e-62 244.6 460 36.7
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 6.1e-62 243.4 282 43.6
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-60 238.8 791 27.4
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 4.1e-58 230.7 367 37.9
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 9.1e-58 229.6 330 40.9
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 5.0e-56 223.8 338 40.8
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 4.5e-49 200.7 228 43.9
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.0e-44 185.3 291 37.1
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 1.9e-39 168.7 687 23.3
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 2.0e-36 158.7 205 40.5
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 4.9e-35 154.1 248 41.9
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 8.3e-35 153.3 787 23.1
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 5.4e-34 150.6 244 39.3
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 7.0e-34 150.2 244 40.6
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 6.0e-33 147.1 245 42.0
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 6.2e-22 110.5 174 34.5
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 5.8e-20 104.0 105 45.7
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 1.6e-17 95.9 117 41.9
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 1.5e-15 89.4 70 64.3
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.2e-09 69.7 57 57.9
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 7.8e-09 67.0 57 56.1
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 7.8e-09 67.0 57 56.1
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 1.7e-08 65.9 47 55.3
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 5.6e-07 60.8 48 60.4
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 7.3e-07 60.5 49 61.2


User provided reference genes

Program Settings