Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 1.1e-164 583.2 296 100.0
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 2.1e-41 173.7 91 100.0
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 1.0e-32 144.8 87 83.9
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 8.8e-32 141.7 91 81.3
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 1.2e-31 141.4 90 78.9
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 1.5e-31 141.0 91 81.3
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 2.0e-31 140.6 91 80.2
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 2.0e-31 140.6 94 78.7
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 2.6e-31 140.2 91 80.2
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 3.3e-31 139.8 87 82.8
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 4.4e-31 139.4 91 79.1
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 5.7e-31 139.0 96 78.1
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 5.7e-31 139.0 96 78.1
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 5.7e-31 139.0 91 80.2
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 7.5e-31 138.7 90 78.9
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 7.5e-31 138.7 90 80.0
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 7.5e-31 138.7 90 80.0
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 7.5e-31 138.7 90 81.1
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 9.7e-31 138.3 90 80.0
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 9.7e-31 138.3 93 75.3
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 9.7e-31 138.3 90 80.0
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 1.3e-30 137.9 93 76.3
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 1.3e-30 137.9 87 80.5
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 1.3e-30 137.9 90 80.0
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 1.3e-30 137.9 90 78.9
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.3e-30 137.9 96 77.1
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 1.3e-30 137.9 90 78.9
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 1.7e-30 137.5 92 77.2
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 1.7e-30 137.5 90 78.9
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 1.7e-30 137.5 90 76.7
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 1.7e-30 137.5 90 78.9
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 1.7e-30 137.5 91 78.0
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 2.2e-30 137.1 91 78.0
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 2.2e-30 137.1 90 78.9
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 2.2e-30 137.1 90 80.0
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 2.8e-30 136.7 89 79.8
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 2.8e-30 136.7 93 77.4
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 2.8e-30 136.7 93 77.4
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 3.7e-30 136.3 90 78.9
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 3.7e-30 136.3 86 80.2
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 3.7e-30 136.3 90 78.9
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 3.7e-30 136.3 90 78.9
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 3.7e-30 136.3 90 74.4
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 3.7e-30 136.3 90 76.7
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 4.8e-30 136.0 90 77.8
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 4.8e-30 136.0 91 78.0
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 4.8e-30 136.0 91 75.8
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 4.8e-30 136.0 92 75.0
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 4.8e-30 136.0 91 79.1
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 4.8e-30 136.0 90 77.8
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 4.8e-30 136.0 90 77.8
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 4.8e-30 136.0 90 78.9
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 6.3e-30 135.6 131 58.8
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 6.3e-30 135.6 90 78.9
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 6.3e-30 135.6 90 76.7
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 6.3e-30 135.6 90 77.8
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 8.2e-30 135.2 90 78.9
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 8.2e-30 135.2 90 78.9
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 8.2e-30 135.2 90 75.6
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 8.2e-30 135.2 90 75.6
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 8.2e-30 135.2 90 78.9
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 1.1e-29 134.8 91 74.7
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.1e-29 134.8 90 78.9
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.1e-29 134.8 90 78.9
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 1.1e-29 134.8 93 76.3
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 1.4e-29 134.4 86 79.1
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 1.4e-29 134.4 90 76.7
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 1.4e-29 134.4 90 76.7
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 1.4e-29 134.4 90 78.9
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 1.8e-29 134.0 87 78.2
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 1.8e-29 134.0 90 77.8
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 2.4e-29 133.7 90 74.4
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 2.4e-29 133.7 87 79.3
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 2.4e-29 133.7 87 79.3
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 2.4e-29 133.7 90 75.6
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 3.1e-29 133.3 87 78.2
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 4.1e-29 132.9 87 75.9
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 4.1e-29 132.9 90 76.7
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 4.1e-29 132.9 90 77.8
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 4.1e-29 132.9 90 77.8
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 4.1e-29 132.9 90 76.7
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 4.1e-29 132.9 90 75.6
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 5.3e-29 132.5 90 76.7
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 5.3e-29 132.5 90 76.7
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 5.3e-29 132.5 90 76.7
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 5.3e-29 132.5 90 76.7
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 5.3e-29 132.5 90 76.7
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 5.3e-29 132.5 90 76.7
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 5.3e-29 132.5 87 78.2
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 5.3e-29 132.5 90 77.8
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 7.0e-29 132.1 90 75.6
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 7.0e-29 132.1 87 79.3
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 9.1e-29 131.7 87 77.0
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 9.1e-29 131.7 86 77.9
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 1.2e-28 131.3 93 72.0
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 1.2e-28 131.3 90 75.6
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 1.2e-28 131.3 90 75.6
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 1.2e-28 131.3 90 75.6
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 1.6e-28 131.0 90 76.7
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 1.6e-28 131.0 87 75.9
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 2.0e-28 130.6 90 73.3
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 2.0e-28 130.6 90 73.3
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 7.7e-28 128.6 86 76.7
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 1.0e-27 128.3 92 71.7
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 5.0e-27 125.9 90 73.3
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 8.5e-27 125.2 102 67.6
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 1.5e-26 124.4 94 71.3
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.5e-26 124.4 90 75.6
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 2.5e-26 123.6 90 73.3
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 5.5e-26 122.5 90 74.4
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 7.2e-26 122.1 120 60.0
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 7.2e-26 122.1 94 74.5
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 2.7e-25 120.2 105 65.7
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 6.1e-25 119.0 107 62.6
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 6.8e-24 115.5 90 70.0
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 2.0e-23 114.0 91 68.1
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 3.4e-23 113.2 97 64.9
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 3.4e-23 113.2 129 52.7
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 4.4e-23 112.8 69 84.1
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 3.7e-22 109.8 66 86.4
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 4.8e-22 109.4 88 69.3
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 4.8e-22 109.4 145 47.6
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 6.3e-22 109.0 67 83.6
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 6.3e-22 109.0 91 67.0
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 1.4e-21 107.8 68 79.4
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 1.8e-21 107.5 66 83.3
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 2.4e-21 107.1 66 83.3
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 3.1e-21 106.7 65 83.1
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 3.1e-21 106.7 65 84.6
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 3.1e-21 106.7 66 83.3
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 5.4e-21 105.9 66 83.3
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 9.1e-21 105.1 75 76.0
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 4.7e-17 92.8 92 58.7
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 1.7e-14 84.3 89 52.8
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 2.2e-14 84.0 49 87.8
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 5.4e-13 79.3 48 85.4
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 7.0e-13 79.0 50 82.0
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 9.2e-13 78.6 86 46.5
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.0e-12 77.4 50 76.0
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 1.7e-11 74.3 90 51.1
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 1.7e-11 74.3 43 88.4
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 1.7e-11 74.3 43 88.4
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 2.3e-11 73.9 42 90.5
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 6.6e-11 72.4 44 84.1
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 6.6e-11 72.4 44 84.1
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 1.9e-10 70.9 53 71.7
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 1.9e-10 70.9 43 83.7
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 2.5e-10 70.5 90 48.9
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 2.5e-10 70.5 42 83.3
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 4.3e-10 69.7 45 80.0
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 7.3e-10 68.9 46 78.3
SEGI_10888 Sequoiadendron giganteum HOM05D009476 ORTHO05D014262 2.8e-09 67.0 104 37.5
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 3.6e-09 66.6 83 45.8
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 3.6e-09 66.6 45 77.8
SEGI_16060 Sequoiadendron giganteum HOM05D000269 ORTHO05D385533 7.5e-07 58.9 102 35.3
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 2.2e-06 57.4 90 37.8


User provided reference genes

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