Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 0.0e+00 1459.5 760 100.0
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 1.4e-262 909.8 755 61.3
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 1.4e-262 909.8 762 62.7
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 5.2e-262 907.9 744 63.7
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 5.8e-261 904.4 762 62.9
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 9.8e-261 903.7 762 62.3
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 2.2e-260 902.5 762 62.2
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 5.4e-259 897.9 749 62.9
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 2.0e-258 896.0 749 61.4
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 4.6e-258 894.8 758 61.1
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 7.8e-258 894.0 744 62.1
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.7e-257 892.9 754 61.5
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.7e-257 892.9 754 62.3
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 5.0e-257 891.3 755 61.6
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 1.9e-256 889.4 749 61.9
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 2.5e-256 889.0 758 61.7
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.6e-255 886.3 770 60.4
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 2.1e-255 885.9 758 62.1
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 3.7e-252 875.2 751 60.2
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 6.4e-252 874.4 746 61.9
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.1e-251 873.6 757 61.0
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 4.1e-251 871.7 762 59.4
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 5.4e-251 871.3 754 60.5
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 9.2e-251 870.5 757 60.6
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.2e-250 870.2 755 61.1
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 2.1e-250 869.4 765 59.5
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 4.6e-250 868.2 783 59.6
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 4.6e-250 868.2 747 60.5
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 4.6e-250 868.2 747 60.2
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 6.0e-250 867.8 757 60.8
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 2.3e-249 865.9 745 61.2
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 2.3e-249 865.9 754 59.2
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 3.0e-249 865.5 755 59.7
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 5.1e-249 864.8 754 59.9
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 6.6e-249 864.4 754 59.4
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 8.6e-249 864.0 754 59.3
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 3.3e-248 862.1 749 61.1
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 7.3e-248 860.9 748 59.6
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 7.3e-248 860.9 752 60.8
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.2e-247 860.1 757 59.8
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.6e-247 859.8 758 59.5
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 4.7e-247 858.2 754 58.9
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 6.2e-247 857.8 761 60.1
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 6.2e-247 857.8 754 58.9
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 1.1e-246 857.1 751 58.5
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.8e-246 856.3 742 61.1
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 5.2e-246 854.7 751 60.1
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 6.8e-246 854.4 756 58.9
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 6.8e-246 854.4 749 60.5
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 8.9e-246 854.0 751 59.1
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 1.2e-245 853.6 754 59.5
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.6e-245 852.4 759 59.9
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 4.4e-245 851.7 771 59.3
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 7.6e-245 850.9 751 58.9
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 9.9e-245 850.5 750 59.3
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.2e-244 849.4 771 59.1
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 2.2e-244 849.4 757 59.0
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 6.4e-244 847.8 770 58.7
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 1.1e-243 847.0 748 59.6
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.1e-243 847.0 770 58.6
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.9e-243 846.3 753 58.8
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 5.4e-243 844.7 757 59.0
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.6e-242 841.6 711 62.2
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 7.8e-242 840.9 759 58.6
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 1.0e-241 840.5 754 57.8
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 3.9e-241 838.6 757 59.4
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 3.9e-241 838.6 749 59.4
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 5.1e-241 838.2 754 57.7
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 1.9e-240 836.3 767 58.3
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 2.5e-240 835.9 748 59.5
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.4e-238 830.1 751 58.9
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 3.1e-238 828.9 760 58.0
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 5.2e-238 828.2 748 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 6.8e-238 827.8 755 57.7
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 4.4e-237 825.1 754 59.3
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 7.6e-237 824.3 747 59.6
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.3e-236 823.5 764 57.9
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 6.4e-236 821.2 766 57.6
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 6.4e-236 821.2 747 58.8
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 4.2e-235 818.5 760 57.1
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 1.2e-234 817.0 747 58.1
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 3.9e-233 812.0 764 56.7
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 3.9e-233 812.0 764 56.7
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 6.6e-233 811.2 761 56.8
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 2.5e-232 809.3 764 56.7
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 2.5e-232 809.3 764 56.7
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 9.6e-232 807.4 764 56.5
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.1e-231 806.2 747 58.0
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 8.1e-231 804.3 763 56.6
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 2.4e-230 802.7 767 56.2
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 2.4e-230 802.7 767 56.2
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.2e-229 800.4 679 61.9
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.6e-229 799.3 763 56.1
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 7.6e-229 797.7 765 55.8
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 7.6e-229 797.7 765 55.8
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 2.2e-228 796.2 744 57.7
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 2.4e-227 792.7 789 55.0
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 2.7e-226 789.3 762 54.5
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.7e-225 786.6 751 55.4
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 3.9e-225 785.4 762 56.0
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.3e-223 780.4 760 55.0
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.1e-219 767.3 748 56.1
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.8e-214 750.0 761 52.2
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 7.6e-213 744.6 769 54.6
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 2.5e-211 739.6 708 56.6
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.1e-210 736.5 660 58.0
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.3e-206 721.8 732 52.9
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 4.5e-205 718.8 632 58.2
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 5.9e-205 718.4 759 51.8
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 5.9e-205 718.4 818 49.4
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 3.8e-204 715.7 760 52.4
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.4e-203 713.8 760 51.4
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.4e-203 713.8 760 51.4
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 2.2e-199 699.9 759 50.9
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 3.3e-192 676.0 723 51.2
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.0e-185 654.4 528 63.6
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.0e-180 637.9 650 52.9
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.2e-179 632.9 536 61.4
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 8.2e-175 618.2 528 60.0
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.7e-170 603.2 608 53.8
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 6.1e-170 602.1 533 57.8
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 4.0e-169 599.4 733 47.6
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.8e-161 573.9 548 56.4
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 5.0e-140 502.7 763 41.7
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.5e-123 448.0 381 63.5
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.9e-115 421.0 381 59.1
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 1.1e-113 415.2 737 35.8
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 3.3e-99 367.1 346 54.6
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-91 341.7 474 44.3
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 2.3e-84 317.8 752 29.9
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.0e-80 304.7 835 28.7
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.2e-72 278.9 227 63.4
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 6.1e-61 240.0 213 60.1
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 8.0e-61 239.6 533 35.3
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 4.7e-53 213.8 112 99.1
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.0e-36 157.9 222 44.6
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 1.6e-32 145.6 125 60.0
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 3.4e-27 127.9 137 48.2
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 1.3e-26 125.9 200 38.5
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.7e-26 125.6 151 46.4
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 3.2e-25 121.3 100 59.0
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 6.6e-23 113.6 91 61.5
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 6.8e-20 103.6 98 55.1
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 5.8e-19 100.5 96 47.9
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 1.7e-18 99.0 218 35.3
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 6.4e-18 97.1 144 47.9
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.1e-17 96.3 80 61.2
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.9e-17 95.5 83 59.0
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 5.1e-15 87.4 126 42.1
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 7.3e-14 83.6 67 64.2
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.1e-13 82.0 66 65.2
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 2.8e-13 81.6 93 51.6
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 1.4e-12 79.3 112 42.0
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 5.4e-09 67.4 81 40.7
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 1.3e-07 62.8 67 46.3
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 2.3e-07 62.0 59 55.9
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 6.6e-07 60.5 88 35.2
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 9.6e-06 56.6 65 43.1


User provided reference genes

Program Settings