Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.8e-93 345.5 207 100.0
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 7.7e-67 257.7 202 67.3
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 7.7e-67 257.7 202 61.4
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 8.5e-66 254.2 200 61.5
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.1e-65 253.8 202 60.4
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.2e-65 252.3 202 63.4
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 4.2e-65 251.9 202 59.9
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 9.4e-65 250.8 202 59.4
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 9.4e-65 250.8 202 59.4
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 2.1e-64 249.6 202 71.8
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 4.7e-64 248.4 202 64.9
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 1.4e-63 246.9 202 57.9
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 1.4e-63 246.9 202 65.8
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.8e-63 246.5 202 70.3
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 2.3e-63 246.1 202 65.8
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 3.0e-63 245.7 202 59.4
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 3.0e-63 245.7 202 58.4
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 8.8e-63 244.2 202 70.3
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 8.8e-63 244.2 202 58.4
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 2.0e-62 243.0 202 70.8
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 2.6e-62 242.7 202 71.3
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 4.4e-62 241.9 202 70.8
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 7.5e-62 241.1 202 57.9
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 9.7e-62 240.7 199 63.8
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 1.7e-61 240.0 202 58.9
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.7e-61 240.0 202 62.9
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 2.2e-61 239.6 202 63.9
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 2.2e-61 239.6 202 58.9
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 4.8e-61 238.4 203 58.6
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 2.4e-60 236.1 202 58.4
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.1e-60 235.7 202 68.8
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 3.1e-60 235.7 188 60.6
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 5.3e-60 235.0 202 56.4
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 7.0e-60 234.6 202 61.9
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 7.0e-60 234.6 202 69.3
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 7.0e-60 234.6 202 59.9
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 9.1e-60 234.2 206 57.8
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 9.1e-60 234.2 202 59.4
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 1.6e-59 233.4 218 59.2
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 2.0e-59 233.0 201 54.7
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 2.0e-59 233.0 202 56.4
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 2.0e-59 233.0 202 65.3
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 2.0e-59 233.0 202 55.9
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 3.5e-59 232.3 202 55.4
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 4.5e-59 231.9 202 55.0
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 5.9e-59 231.5 200 62.5
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 5.9e-59 231.5 202 57.4
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 5.9e-59 231.5 202 69.3
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 5.9e-59 231.5 201 64.2
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 5.9e-59 231.5 198 55.1
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 7.7e-59 231.1 200 66.0
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 1.0e-58 230.7 202 61.9
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.3e-58 230.3 203 55.7
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.3e-58 230.3 202 56.4
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 1.7e-58 229.9 203 57.1
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 2.2e-58 229.6 198 70.7
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 2.9e-58 229.2 202 55.0
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.5e-57 226.9 201 59.2
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.5e-57 226.9 202 55.0
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.5e-57 226.9 201 63.7
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.5e-57 226.1 202 69.3
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.5e-57 226.1 202 69.3
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 4.2e-57 225.3 201 53.2
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 5.5e-57 224.9 202 54.0
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 5.5e-57 224.9 200 63.5
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 5.5e-57 224.9 200 63.5
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.2e-56 223.8 201 62.2
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.2e-56 223.8 179 58.7
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.6e-56 223.4 200 54.5
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 2.1e-56 223.0 202 68.8
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.1e-56 223.0 202 68.8
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.1e-56 223.0 200 65.0
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 2.7e-56 222.6 200 55.0
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 3.6e-56 222.2 200 62.5
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 4.7e-56 221.9 201 61.2
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 4.7e-56 221.9 202 52.5
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 6.1e-56 221.5 203 53.7
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 1.4e-55 220.3 200 64.5
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 1.8e-55 219.9 200 65.0
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.8e-55 219.9 200 64.5
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.0e-55 218.8 202 67.3
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 8.8e-55 217.6 215 50.7
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 2.6e-54 216.1 184 72.8
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 5.7e-54 214.9 179 71.5
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 1.3e-53 213.8 179 64.2
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 1.3e-53 213.8 201 52.2
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 6.3e-53 211.5 220 48.6
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.1e-52 210.7 175 59.4
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.4e-52 209.5 180 73.3
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 3.1e-52 209.1 201 53.2
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 1.2e-51 207.2 202 51.5
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.6e-51 206.8 202 52.5
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.5e-51 205.7 202 58.4
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.3e-50 203.8 202 51.0
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 2.3e-50 203.0 202 61.4
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 2.3e-50 203.0 202 61.4
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 2.3e-50 203.0 202 61.4
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.9e-50 202.6 202 49.5
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.9e-50 202.6 204 61.8
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.9e-50 202.6 204 61.8
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.9e-50 202.6 204 61.8
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.9e-50 202.6 204 61.8
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 2.9e-50 202.6 201 51.7
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.5e-49 200.3 202 53.5
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 3.3e-49 199.1 192 53.6
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 5.5e-49 198.4 200 61.5
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 5.5e-49 198.4 202 64.4
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 5.5e-49 198.4 202 64.4
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 5.5e-49 198.4 231 53.2
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.8e-48 196.1 202 56.9
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.8e-48 196.1 202 56.9
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 6.1e-48 194.9 198 64.1
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 8.0e-48 194.5 202 59.9
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.0e-47 194.1 202 58.9
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 1.4e-47 193.7 186 51.1
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 3.0e-47 192.6 200 59.5
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 6.8e-47 191.4 200 60.0
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 2.6e-46 189.5 177 50.3
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 8.3e-45 184.5 179 49.7
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.7e-43 179.5 203 45.8
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.7e-43 179.5 203 45.8
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 5.9e-43 178.3 174 70.1
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 7.8e-43 177.9 192 49.0
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.7e-42 176.8 189 47.6
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 1.7e-42 176.8 202 54.5
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 1.7e-42 176.8 157 54.1
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.5e-41 173.7 200 45.5
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.9e-41 173.3 187 57.8
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 3.6e-40 169.1 180 48.9
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.0e-39 167.5 202 52.5
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.0e-39 167.5 202 52.5
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 3.0e-39 166.0 200 44.5
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 5.2e-39 165.2 175 62.3
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 8.9e-39 164.5 202 44.1
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 1.7e-37 160.2 145 53.1
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 2.2e-37 159.8 148 63.5
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 6.4e-37 158.3 148 54.1
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.6e-35 153.7 194 41.8
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 3.5e-35 152.5 153 71.2
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 3.5e-35 152.5 205 41.5
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.7e-34 150.2 198 43.9
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 3.3e-33 146.0 193 43.0
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 8.0e-32 141.4 190 35.3
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.4e-31 140.6 198 38.9
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.8e-31 140.2 83 74.7
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.3e-31 139.8 189 39.2
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.3e-31 139.8 182 39.0
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 4.0e-31 139.0 198 39.4
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 4.0e-31 139.0 198 38.9
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 4.4e-30 135.6 210 37.6
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.8e-30 134.4 197 39.6
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.3e-29 134.0 185 37.8
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 4.9e-29 132.1 222 37.8
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 7.0e-28 128.3 198 37.4
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.1e-27 126.7 153 42.5
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.1e-23 114.4 129 50.4
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 4.9e-21 105.5 202 35.1
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 2.3e-18 96.7 154 34.4
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 3.0e-18 96.3 83 55.4
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.5e-17 91.3 152 33.6
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 1.7e-13 80.5 54 64.8
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 7.1e-12 75.1 61 60.7
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 9.2e-12 74.7 60 61.7
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 1.2e-11 74.3 60 58.3
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 2.3e-10 70.1 214 26.2
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 6.6e-10 68.6 157 28.7
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 2.5e-09 66.6 58 55.2
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 1.8e-07 60.5 33 75.8
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 9.0e-07 58.2 220 23.6


User provided reference genes

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