Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.9e-165 585.1 285 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 1.0e-93 347.4 291 58.8
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 3.3e-92 342.4 271 62.0
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 9.5e-92 340.9 271 61.3
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 2.1e-91 339.7 228 67.1
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.8e-91 339.3 250 64.0
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 3.6e-91 339.0 271 60.5
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 3.6e-91 339.0 271 60.5
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 3.6e-91 339.0 271 60.5
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 6.2e-91 338.2 268 60.8
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.1e-90 337.4 255 63.1
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 3.1e-90 335.9 254 61.0
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 3.1e-90 335.9 297 55.6
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 6.8e-90 334.7 261 59.8
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 6.8e-90 334.7 255 62.4
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.5e-89 333.6 267 60.3
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 5.8e-89 331.6 272 59.9
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 7.5e-89 331.3 255 61.6
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 7.5e-89 331.3 290 55.5
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 7.5e-89 331.3 268 59.0
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 9.9e-89 330.9 271 59.0
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 9.9e-89 330.9 257 62.6
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.3e-88 330.5 272 59.9
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.3e-88 330.5 255 61.2
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.3e-88 330.5 291 58.4
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 2.2e-88 329.7 235 66.4
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 3.7e-88 328.9 271 58.7
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 6.4e-88 328.2 297 54.5
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 6.4e-88 328.2 281 59.8
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.3e-88 327.8 254 61.0
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 8.3e-88 327.8 287 57.1
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.4e-87 327.0 294 54.1
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.9e-87 326.6 289 57.8
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.9e-87 326.6 217 68.2
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.4e-87 326.2 261 58.6
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.4e-87 326.2 255 60.4
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 3.2e-87 325.9 296 55.4
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 5.4e-87 325.1 303 54.8
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 5.4e-87 325.1 262 58.4
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.2e-87 324.3 262 58.4
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 2.1e-86 323.2 241 62.2
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 3.5e-86 322.4 254 59.1
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 4.6e-86 322.0 257 61.5
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 4.6e-86 322.0 253 60.1
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 6.0e-86 321.6 293 53.6
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 7.8e-86 321.2 285 57.2
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 7.8e-86 321.2 216 68.1
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 7.8e-86 321.2 262 58.0
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 7.8e-86 321.2 254 59.4
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.0e-85 320.9 282 58.2
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.0e-85 320.9 255 58.4
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 1.3e-85 320.5 269 56.9
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.3e-85 320.5 289 55.7
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.3e-85 319.7 251 59.0
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 5.1e-85 318.5 225 65.8
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.5e-84 317.0 284 56.0
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.5e-84 317.0 284 56.0
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.5e-84 316.2 256 57.8
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.5e-84 316.2 262 57.3
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.3e-84 315.5 253 57.7
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 4.3e-84 315.5 296 54.4
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 5.6e-84 315.1 256 57.4
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 7.3e-84 314.7 255 60.0
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 7.3e-84 314.7 255 58.8
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 9.5e-84 314.3 254 59.8
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 9.5e-84 314.3 278 56.5
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.2e-83 313.9 255 58.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.2e-83 313.9 217 65.9
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.6e-83 313.5 253 57.3
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.6e-83 313.5 253 57.3
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.6e-83 313.5 289 55.0
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 2.8e-83 312.8 277 57.4
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 2.8e-83 312.8 211 66.4
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 3.6e-83 312.4 276 55.8
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 8.1e-83 311.2 276 54.3
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.1e-82 310.8 255 58.8
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.1e-82 310.8 294 53.4
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 1.1e-82 310.8 259 58.3
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.4e-82 310.5 280 53.6
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.1e-82 309.3 273 56.0
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 3.1e-82 309.3 298 55.0
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 4.0e-82 308.9 279 53.0
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 4.0e-82 308.9 288 53.5
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 5.2e-82 308.5 294 54.8
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 8.9e-82 307.8 283 53.0
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 3.4e-81 305.8 280 53.6
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 3.4e-81 305.8 288 53.8
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 7.6e-81 304.7 274 52.9
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 7.6e-81 304.7 290 54.8
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 9.9e-81 304.3 298 52.3
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.3e-80 303.9 290 54.5
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.9e-80 302.8 271 53.9
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.9e-80 302.8 262 55.3
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 3.8e-80 302.4 238 57.6
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 4.9e-80 302.0 287 54.4
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 6.4e-80 301.6 290 52.4
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 8.4e-80 301.2 271 57.6
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 1.4e-79 300.4 255 55.3
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.9e-79 300.1 269 56.1
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 2.4e-79 299.7 254 54.7
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.4e-79 299.7 295 54.6
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 4.2e-79 298.9 291 54.3
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 4.2e-79 298.9 274 54.4
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.2e-78 297.4 217 61.8
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.2e-78 297.4 269 55.8
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.6e-78 297.0 259 57.9
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 2.7e-78 296.2 276 54.0
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 2.7e-78 296.2 284 53.2
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.7e-78 296.2 225 60.4
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 3.5e-78 295.8 287 53.0
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.0e-78 295.0 222 60.8
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.7e-77 293.5 265 53.2
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.7e-77 293.5 254 56.3
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 3.0e-77 292.7 284 53.9
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.1e-76 290.8 276 53.6
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.5e-76 290.4 284 52.8
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.9e-76 290.0 254 54.3
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 4.3e-76 288.9 281 50.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 7.3e-76 288.1 258 57.0
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.2e-75 287.3 264 53.8
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.2e-75 287.3 264 53.8
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.2e-75 287.3 237 55.7
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.1e-74 284.3 284 52.5
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 2.4e-74 283.1 294 49.0
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.4e-74 283.1 229 58.5
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 9.0e-74 281.2 300 52.7
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 5.8e-73 278.5 301 48.5
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 6.4e-64 248.4 220 53.6
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 6.0e-62 241.9 271 49.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.9e-61 239.2 225 48.9
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.9e-58 228.4 159 60.4
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.9e-56 222.2 204 50.5
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 2.8e-51 206.5 225 47.1
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.4e-50 203.4 217 45.6
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.0e-45 186.4 119 71.4
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 5.1e-45 185.7 216 41.7
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 5.7e-44 182.2 261 39.1
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.6e-43 180.6 256 39.5
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 4.8e-43 179.1 312 33.3
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.8e-42 177.2 109 71.6
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.4e-42 176.8 109 74.3
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 7.7e-41 171.8 122 63.9
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.0e-40 171.4 122 63.9
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 3.8e-40 169.5 146 58.9
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 5.1e-37 159.1 191 43.5
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 8.2e-35 151.8 89 76.4
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 8.2e-35 151.8 89 76.4
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.1e-30 137.1 230 37.8
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 6.3e-27 125.6 110 53.6
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.9e-23 114.0 116 48.3
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.5e-07 60.5 41 63.4
MBI13_g00691_MAGBIO Magnolia biondii HOM05D031672 ORTHO05D242066 3.6e-06 56.6 113 30.1


User provided reference genes

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