Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19148 Sequoiadendron giganteum HOM05D008101 ORTHO05D010163 1.8e-136 490.0 393 100.0
SEGI_38582 Sequoiadendron giganteum HOM05D002487 ORTHO05D002748 1.3e-27 128.3 97 68.0
SEGI_28592 Sequoiadendron giganteum HOM05D000677 ORTHO05D005463 3.9e-19 100.1 119 49.6
SEGI_08826 Sequoiadendron giganteum HOM05D000206 ORTHO05D002863 1.5e-18 98.2 97 56.7
SEGI_38839 Sequoiadendron giganteum HOM05D002643 ORTHO05D002984 7.4e-18 95.9 119 48.7
SEGI_34443 Sequoiadendron giganteum HOM05D000005 ORTHO05D000239 4.8e-17 93.2 117 47.9
SEGI_33847 Sequoiadendron giganteum HOM05D000106 ORTHO05D003154 1.5e-15 88.2 97 53.6
SEGI_08004 Sequoiadendron giganteum HOM05D000838 ORTHO05D000656 2.0e-15 87.8 97 53.6
SEGI_03428 Sequoiadendron giganteum HOM05D000991 ORTHO05D000848 7.6e-15 85.9 97 48.5
SEGI_35367 Sequoiadendron giganteum HOM05D002072 ORTHO05D001634 8.4e-14 82.4 92 54.3
SEGI_10534 Sequoiadendron giganteum HOM05D014588 ORTHO05D004021 2.1e-12 77.8 89 52.8
SEGI_35006 Sequoiadendron giganteum HOM05D000005 ORTHO05D000239 2.7e-12 77.4 102 49.0
SEGI_34751 Sequoiadendron giganteum HOM05D001801 ORTHO05D001739 1.0e-11 75.5 109 45.0
SEGI_02948 Sequoiadendron giganteum HOM05D014588 ORTHO05D014574 3.3e-10 70.5 46 69.6
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 1.4e-08 65.1 48 66.7
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 1.4e-08 65.1 48 66.7
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 1.8e-08 64.7 48 66.7
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.8e-08 64.7 51 60.8
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 2.4e-08 64.3 48 64.6
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.4e-08 64.3 48 64.6
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.4e-08 64.3 48 64.6
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.4e-08 64.3 48 64.6
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 2.4e-08 64.3 48 66.7
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 3.1e-08 63.9 48 62.5
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 3.1e-08 63.9 48 62.5
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 3.1e-08 63.9 48 62.5
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 4.0e-08 63.5 48 64.6
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 4.0e-08 63.5 48 64.6
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 5.3e-08 63.2 48 64.6
SEGI_03752 Sequoiadendron giganteum HOM05D005882 ORTHO05D007387 5.3e-08 63.2 52 53.8
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 6.9e-08 62.8 48 64.6
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 9.0e-08 62.4 48 62.5
SEGI_20335 Sequoiadendron giganteum HOM05D000990 ORTHO05D000810 9.0e-08 62.4 46 63.0
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 1.5e-07 61.6 48 56.2
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 1.5e-07 61.6 48 60.4
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.6e-07 60.8 48 60.4
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 7.6e-07 59.3 48 58.3
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 1.3e-06 58.5 48 58.3
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 1.7e-06 58.2 48 58.3
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 1.7e-06 58.2 48 56.2
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 2.2e-06 57.8 48 60.4
Aqoxy3G03441 Aquilegia oxysepala HOM05D008101 ORTHO05D010163 2.9e-06 57.4 52 53.8
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 3.8e-06 57.0 40 67.5
EL10Ac9g21543 Beta vulgaris HOM05D008101 ORTHO05D010163 4.9e-06 56.6 77 40.3
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 4.9e-06 56.6 47 55.3
SEGI_17047 Sequoiadendron giganteum HOM05D000089 ORTHO05D003403 4.9e-06 56.6 95 47.4
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 6.5e-06 56.2 48 56.2


User provided reference genes

Program Settings