Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 2.2e-131 472.2 229 100.0
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 3.7e-62 242.3 144 71.5
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.1e-58 230.7 142 71.1
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.6e-57 226.9 173 61.8
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 6.1e-57 224.9 158 62.0
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.8e-56 223.4 148 66.9
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 5.2e-56 221.9 148 65.5
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 8.8e-56 221.1 148 65.5
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.5e-55 220.3 151 64.2
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.5e-55 220.3 148 66.2
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 2.0e-55 219.9 148 66.2
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 3.4e-55 219.2 145 67.6
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 3.4e-55 219.2 151 62.9
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 4.4e-55 218.8 151 63.6
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 5.7e-55 218.4 146 65.1
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 5.7e-55 218.4 157 62.4
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 7.5e-55 218.0 150 63.3
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 9.8e-55 217.6 146 65.8
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 9.8e-55 217.6 145 66.9
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.3e-54 217.2 150 64.0
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.3e-54 217.2 160 61.2
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.2e-54 216.5 188 54.3
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 2.8e-54 216.1 149 63.1
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 3.7e-54 215.7 170 59.4
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.7e-54 215.7 220 47.7
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 4.8e-54 215.3 157 62.4
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 6.3e-54 214.9 145 65.5
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 6.3e-54 214.9 148 64.2
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 8.3e-54 214.5 146 65.1
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.1e-53 214.2 148 62.8
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.4e-53 213.8 153 60.8
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.4e-53 213.8 228 47.4
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.4e-53 213.8 151 61.6
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 1.8e-53 213.4 149 61.7
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.8e-53 213.4 148 63.5
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.4e-53 213.0 208 51.4
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 2.4e-53 213.0 219 49.3
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 3.1e-53 212.6 145 63.4
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 4.1e-53 212.2 154 61.0
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.1e-53 212.2 159 61.6
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 5.4e-53 211.8 145 64.8
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 7.0e-53 211.5 136 68.4
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 7.0e-53 211.5 145 62.8
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 9.1e-53 211.1 146 63.0
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 9.1e-53 211.1 151 61.6
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 9.1e-53 211.1 147 62.6
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.6e-52 210.3 142 65.5
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-52 210.3 147 61.2
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-52 210.3 152 59.9
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.6e-52 210.3 167 55.1
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.6e-52 210.3 146 65.1
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.6e-52 210.3 232 44.8
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.0e-52 209.9 147 61.2
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 2.0e-52 209.9 150 63.3
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.7e-52 209.5 170 57.6
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.7e-52 209.5 145 62.8
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.7e-52 209.5 152 60.5
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 2.7e-52 209.5 160 60.0
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 3.5e-52 209.1 167 60.5
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.5e-52 209.1 153 58.8
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.7e-51 206.8 174 54.6
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.7e-51 206.8 186 51.1
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.3e-51 206.5 147 59.9
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 2.3e-51 206.5 160 58.1
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.9e-51 206.1 153 58.2
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.8e-51 205.7 147 59.9
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 3.8e-51 205.7 175 56.0
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.0e-51 205.3 148 60.1
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 5.0e-51 205.3 153 58.8
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 2.5e-50 203.0 179 52.0
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.5e-50 203.0 145 62.1
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 5.5e-50 201.8 144 61.1
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 5.5e-50 201.8 148 58.8
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.2e-50 201.4 148 58.1
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 9.5e-50 201.1 201 49.8
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.6e-49 200.3 148 57.4
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.6e-49 200.3 166 53.0
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.7e-49 198.7 148 56.8
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 6.1e-49 198.4 185 47.6
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 8.0e-49 198.0 154 56.5
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.4e-48 197.2 151 61.6
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.4e-48 197.2 153 58.8
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 4.0e-48 195.7 138 63.0
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 8.9e-48 194.5 157 58.0
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.2e-47 194.1 151 57.0
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.3e-46 190.7 127 64.6
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 1.7e-46 190.3 124 66.1
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 2.2e-46 189.9 141 61.0
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.8e-46 189.5 134 61.9
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 3.7e-46 189.1 153 55.6
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 4.9e-46 188.7 122 67.2
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.9e-46 188.7 148 55.4
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.9e-46 188.7 148 55.4
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 6.3e-46 188.3 122 68.9
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.4e-45 187.2 198 45.5
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 3.2e-45 186.0 145 55.9
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.4e-45 185.3 145 53.8
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.0e-45 184.9 202 47.0
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 9.2e-45 184.5 140 60.7
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 9.2e-45 184.5 145 54.5
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.2e-44 184.1 130 63.1
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 3.5e-44 182.6 145 56.6
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 8.6e-43 177.9 148 52.7
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 8.6e-43 177.9 147 55.8
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 3.3e-42 176.0 170 51.2
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 4.3e-42 175.6 149 53.0
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 4.3e-42 175.6 153 53.6
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 5.6e-42 175.3 137 58.4
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.2e-41 174.1 113 69.9
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 1.6e-41 173.7 196 48.5
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 8.0e-41 171.4 156 48.1
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 8.0e-41 171.4 142 51.4
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.4e-40 170.6 156 48.1
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.8e-40 170.2 107 67.3
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.3e-40 169.9 106 65.1
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.3e-40 169.9 178 47.8
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 2.3e-40 169.9 136 58.1
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 3.1e-40 169.5 159 44.7
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 5.2e-40 168.7 106 66.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 5.2e-40 168.7 170 51.2
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.0e-39 166.8 156 46.8
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.3e-38 164.1 196 44.4
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.7e-38 162.5 143 46.2
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 8.3e-38 161.4 143 46.2
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 8.3e-38 161.4 143 46.2
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 8.3e-38 161.4 143 46.2
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 4.1e-37 159.1 143 45.5
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 4.1e-37 159.1 143 45.5
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.1e-37 159.1 153 48.4
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.0e-36 156.8 141 51.1
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-35 154.1 149 43.0
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.3e-35 153.3 145 44.8
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 3.0e-35 152.9 144 48.6
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 6.6e-35 151.8 149 42.3
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 6.6e-35 151.8 149 42.3
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 2.8e-33 146.4 90 67.8
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 6.8e-32 141.7 97 58.8
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.0e-31 140.2 119 47.9
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 3.4e-31 139.4 146 46.6
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.8e-31 138.7 89 64.0
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 4.9e-30 135.6 160 45.6
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 6.4e-30 135.2 218 37.6
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 9.2e-29 131.3 161 39.1
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.7e-28 129.8 90 57.8
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.7e-27 127.1 90 57.8
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.9e-27 125.9 89 57.3
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 7.6e-23 111.7 72 63.9
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.7e-22 110.5 143 43.4
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 2.2e-22 110.2 72 61.1
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 2.9e-22 109.8 64 68.8
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 3.7e-22 109.4 72 62.5
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 8.3e-22 108.2 148 39.9
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 7.8e-20 101.7 83 53.0
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.3e-19 100.9 130 36.9
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 3.9e-19 99.4 68 58.8
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 3.9e-19 99.4 69 55.1
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 4.3e-18 95.9 64 60.9
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 9.6e-18 94.7 210 31.9
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 5.4e-13 79.0 57 63.2
Pp3c15_19030 Physcomitrium patens HOM05D060542 ORTHO05D043949 1.3e-11 74.3 153 32.7
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 8.7e-11 71.6 62 50.0
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 2.8e-09 66.6 85 38.8
Pp3c24_270 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.4e-07 59.3 56 44.6


User provided reference genes

Program Settings