Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 9.6e-89 330.1 162 100.0
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.7e-35 152.5 82 87.8
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 7.9e-35 151.0 82 90.2
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.3e-34 149.4 82 85.4
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 3.0e-34 149.1 82 84.1
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 3.9e-34 148.7 82 86.6
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 5.1e-34 148.3 82 86.6
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 6.7e-34 147.9 82 84.1
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 8.8e-34 147.5 82 86.6
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 8.8e-34 147.5 82 86.6
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 8.8e-34 147.5 82 86.6
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 8.8e-34 147.5 82 86.6
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.5e-33 146.7 82 84.1
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.5e-33 146.7 82 84.1
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 2.0e-33 146.4 82 85.4
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.6e-33 146.0 82 85.4
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 3.3e-33 145.6 82 85.4
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.3e-33 145.6 82 85.4
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 3.3e-33 145.6 82 84.1
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.4e-33 145.2 82 84.1
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.4e-33 145.2 82 84.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 4.4e-33 145.2 82 84.1
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 5.7e-33 144.8 82 84.1
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 7.4e-33 144.4 82 82.9
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 7.4e-33 144.4 82 84.1
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 7.4e-33 144.4 82 84.1
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 7.4e-33 144.4 82 84.1
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 7.4e-33 144.4 82 84.1
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 7.4e-33 144.4 82 82.9
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.4e-33 144.4 82 82.9
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 9.7e-33 144.1 82 82.9
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 9.7e-33 144.1 82 84.1
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.3e-32 143.7 82 84.1
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.3e-32 143.7 82 82.9
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.7e-32 143.3 82 82.9
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.7e-32 143.3 82 84.1
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.7e-32 143.3 82 82.9
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.2e-32 142.9 82 84.1
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.2e-32 142.9 82 82.9
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.2e-32 142.9 82 82.9
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.2e-32 142.9 82 82.9
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 2.2e-32 142.9 82 80.5
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.2e-32 142.9 82 81.7
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 2.2e-32 142.9 82 82.9
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 2.8e-32 142.5 82 80.5
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.8e-32 142.5 82 80.5
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.8e-32 142.5 82 82.9
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 2.8e-32 142.5 82 80.5
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.8e-32 142.5 83 80.7
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.8e-32 142.5 82 82.9
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 3.7e-32 142.1 82 84.1
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 3.7e-32 142.1 82 82.9
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 3.7e-32 142.1 82 82.9
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 3.7e-32 142.1 82 80.5
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.7e-32 142.1 82 82.9
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 3.7e-32 142.1 82 82.9
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 4.8e-32 141.7 82 81.7
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 4.8e-32 141.7 82 82.9
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.8e-32 141.7 82 81.7
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 4.8e-32 141.7 82 84.1
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 4.8e-32 141.7 82 80.5
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 6.3e-32 141.4 82 81.7
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 6.3e-32 141.4 82 81.7
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 8.2e-32 141.0 82 81.7
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 8.2e-32 141.0 82 84.1
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.1e-31 140.6 82 81.7
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.4e-31 140.2 82 81.7
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.4e-31 140.2 82 80.5
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.8e-31 139.8 82 80.5
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.8e-31 139.8 82 81.7
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.8e-31 139.8 82 82.9
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 2.4e-31 139.4 82 78.0
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 2.4e-31 139.4 82 80.5
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.4e-31 139.4 82 80.5
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.4e-31 139.4 82 79.3
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.4e-31 139.4 82 81.7
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.1e-31 139.0 82 80.5
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 4.1e-31 138.7 82 79.3
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 5.3e-31 138.3 82 79.3
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 5.3e-31 138.3 82 81.7
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 9.1e-31 137.5 82 79.3
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 9.1e-31 137.5 82 80.5
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.2e-30 137.1 82 79.3
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.2e-30 137.1 82 79.3
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.6e-30 136.7 85 76.5
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.6e-30 136.7 82 79.3
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.6e-30 136.7 82 80.5
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.6e-30 136.7 82 80.5
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.0e-30 136.3 82 78.0
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 2.0e-30 136.3 82 79.3
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 2.6e-30 136.0 82 79.3
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 2.6e-30 136.0 82 79.3
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 2.6e-30 136.0 82 79.3
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 2.6e-30 136.0 82 79.3
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.6e-30 136.0 82 79.3
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 3.5e-30 135.6 82 79.3
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 3.5e-30 135.6 82 79.3
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 3.5e-30 135.6 82 79.3
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 3.5e-30 135.6 82 80.5
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.5e-30 135.6 82 80.5
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 3.5e-30 135.6 82 78.0
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 4.5e-30 135.2 82 78.0
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 5.9e-30 134.8 82 78.0
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 5.9e-30 134.8 82 78.0
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 5.9e-30 134.8 82 79.3
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.3e-29 133.7 82 78.0
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.3e-29 133.7 82 76.8
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.0e-29 131.7 88 70.5
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 6.5e-29 131.3 82 72.0
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 8.5e-29 131.0 85 72.9
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 1.5e-28 130.2 85 74.1
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.5e-28 130.2 85 72.9
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.5e-28 129.4 82 72.0
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.2e-28 129.0 82 69.5
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 1.6e-27 126.7 82 70.7
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 2.1e-27 126.3 81 77.8
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 6.7e-26 121.3 81 67.9
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 4.4e-25 118.6 81 66.7
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.7e-24 116.7 82 62.2
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.8e-24 115.2 82 61.0
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.8e-23 113.2 81 61.7
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.8e-23 113.2 81 63.0
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.8e-23 113.2 82 63.4
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.3e-23 111.7 81 60.5
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 7.0e-23 111.3 92 64.1
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 9.1e-23 110.9 82 58.5
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.0e-22 109.8 81 60.5
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.7e-22 109.4 81 59.3
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.7e-22 109.4 81 59.3
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.2e-19 100.5 83 60.2
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.2e-19 100.5 84 59.5
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.7e-16 89.0 82 56.1
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.5e-14 82.0 50 80.0
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 5.9e-14 81.6 45 77.8
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.3e-13 80.5 82 53.7
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.0e-13 78.6 50 78.0
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 5.9e-06 55.1 32 81.2


User provided reference genes

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