Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18959 Sequoiadendron giganteum HOM05D001718 ORTHO05D014815 4.9e-61 237.7 124 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3304 Anthoceros agrestis HOM05D001718 ORTHO05D008006 3.8e-13 78.6 100 46.0
Aqoxy5G00099 Aquilegia oxysepala HOM05D001718 ORTHO05D008006 8.5e-13 77.4 100 45.0
Pp3c9_5260 Physcomitrium patens HOM05D001718 ORTHO05D008006 1.5e-12 76.6 103 45.6
ATR0723G067 Amborella trichopoda HOM05D001718 ORTHO05D008006 1.9e-12 76.3 66 51.5
PSO170G6300 Papaver somniferum HOM05D001718 ORTHO05D008006 4.2e-12 75.1 66 54.5
PSO170G2849 Papaver somniferum HOM05D001718 ORTHO05D008006 5.5e-12 74.7 99 43.4
PSO674G0056 Papaver somniferum HOM05D001718 ORTHO05D008006 5.5e-12 74.7 99 43.4
MBI07_g19048_MAGBIO Magnolia biondii HOM05D001718 ORTHO05D008006 7.2e-12 74.3 66 53.0
PGR004G0708 Punica granatum HOM05D001718 ORTHO05D008006 9.4e-12 73.9 66 53.0
Cfa014823 Carpinus fangiana HOM05D001718 ORTHO05D008006 1.2e-11 73.6 65 55.4
Hma1.2p1_0112F.1_g054960 Hydrangea macrophylla HOM05D001718 ORTHO05D008006 2.1e-11 72.8 66 54.5
Peaxi162Scf01007g00115 Petunia axillaris HOM05D001718 ORTHO05D008006 2.1e-11 72.8 66 56.1
Cpa.g.sc59.36 Carica papaya HOM05D001718 ORTHO05D008006 2.7e-11 72.4 66 53.0
Nitab4.5_0001998g0070 Nicotiana tabacum HOM05D001718 ORTHO05D008006 3.6e-11 72.0 66 54.5
Nitab4.5_0002738g0040 Nicotiana tabacum HOM05D001718 ORTHO05D008006 3.6e-11 72.0 66 54.5
GSVIVG01001855001 Vitis vinifera HOM05D001718 ORTHO05D008006 3.6e-11 72.0 99 42.4
CSS0019444 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 4.7e-11 71.6 66 50.0
Haze_11496 Corylus avellana HOM05D001718 ORTHO05D008006 6.1e-11 71.2 66 54.5
Potri.008G173900 Populus trichocarpa HOM05D001718 ORTHO05D008006 6.1e-11 71.2 66 53.0
Nn1g03028 Nelumbo nucifera HOM05D001718 ORTHO05D008006 8.0e-11 70.9 66 53.0
CSS0039982 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 1.0e-10 70.5 66 51.5
Eucgr.H02885 Eucalyptus grandis HOM05D001718 ORTHO05D008006 1.0e-10 70.5 66 51.5
PGSC0003DMG400008622 Solanum tuberosum HOM05D001718 ORTHO05D008006 1.0e-10 70.5 66 54.5
CSS0046227 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 1.4e-10 70.1 66 50.0
CSS0018370 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 1.8e-10 69.7 66 50.0
CiPaw.01G175400 Carya illinoinensis HOM05D001718 ORTHO05D008006 1.8e-10 69.7 99 40.4
SEGI_27468 Sequoiadendron giganteum HOM05D009724 ORTHO05D012048 1.8e-10 69.7 51 78.4
TWI73G1142 Tripterygium wilfordii HOM05D001718 ORTHO05D008006 1.8e-10 69.7 66 51.5
vmacro00532 Vaccinium macrocarpon HOM05D001718 ORTHO05D008006 1.8e-10 69.7 66 53.0
Atru.chr4.1874 Acer truncatum HOM05D001718 ORTHO05D008006 2.3e-10 69.3 66 51.5
CDE11G0512 Ceratophyllum demersum HOM05D001718 ORTHO05D008006 2.3e-10 69.3 99 39.4
Lalb_Chr06g0169581 Lupinus albus HOM05D001718 ORTHO05D008006 2.3e-10 69.3 67 50.7
CANSAT78G1590 Cannabis sativa HOM05D001718 ORTHO05D008006 3.0e-10 68.9 66 51.5
MD13G1225700 Malus domestica HOM05D001718 ORTHO05D008006 3.0e-10 68.9 66 50.0
QL06p021972 Quercus lobata HOM05D001718 ORTHO05D008006 3.0e-10 68.9 66 51.5
Rhsim09G0043700 Rhododendron simsii HOM05D001718 ORTHO05D008006 3.0e-10 68.9 66 51.5
Solyc12g097030.2 Solanum lycopersicum HOM05D001718 ORTHO05D008006 3.0e-10 68.9 66 54.5
Sopen12g032840 Solanum pennellii HOM05D001718 ORTHO05D008006 3.0e-10 68.9 66 54.5
TAR362G0436 Trochodendron aralioides HOM05D001718 ORTHO05D008006 3.0e-10 68.9 66 50.0
Ciclev10004718m.g Citrus clementina HOM05D001718 ORTHO05D008006 4.0e-10 68.6 66 53.0
SEGI_03845 Sequoiadendron giganteum HOM05D001068 ORTHO05D014815 4.0e-10 68.6 52 75.0
CSS0026405 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 5.2e-10 68.2 66 48.5
Sabra08G0132700 Salix brachista HOM05D001718 ORTHO05D008006 5.2e-10 68.2 66 51.5
AT4G17740 Arabidopsis thaliana HOM05D001718 ORTHO05D008006 6.8e-10 67.8 64 50.0
arahy.Tifrunner.gnm1.ann1.45LQ32 Arachis hypogaea HOM05D001718 ORTHO05D008006 6.8e-10 67.8 67 49.3
CAN.G566.5 Capsicum annuum HOM05D001718 ORTHO05D008006 6.8e-10 67.8 66 51.5
Manes.03G156100 Manihot esculenta HOM05D001718 ORTHO05D008006 6.8e-10 67.8 66 48.5
Prupe.1G052500 Prunus persica HOM05D001718 ORTHO05D008006 6.8e-10 67.8 66 50.0
Aa31LG6G490 Aethionema arabicum HOM05D001718 ORTHO05D008006 8.8e-10 67.4 63 50.8
arahy.Tifrunner.gnm1.ann1.E27NQH Arachis hypogaea HOM05D001718 ORTHO05D008006 8.8e-10 67.4 67 47.8
Thhalv10024882m.g Eutrema salsugineum HOM05D001718 ORTHO05D008006 8.8e-10 67.4 64 50.0
Mapoly0016s0103 Marchantia polymorpha HOM05D001718 ORTHO05D008006 8.8e-10 67.4 115 39.1
BcaC06g33587 Brassica carinata HOM05D001718 ORTHO05D008006 1.2e-09 67.0 63 50.8
A03p50680 Brassica napus HOM05D001718 ORTHO05D008006 1.2e-09 67.0 63 50.8
C07p49070 Brassica napus HOM05D001718 ORTHO05D008006 1.2e-09 67.0 63 50.8
BolC7t45413H Brassica oleracea HOM05D001718 ORTHO05D008006 1.2e-09 67.0 63 50.8
BraA03t14160Z Brassica rapa HOM05D001718 ORTHO05D008006 1.2e-09 67.0 63 50.8
Ca_09793_v3 Cicer arietinum L. HOM05D001718 ORTHO05D008006 1.5e-09 66.6 66 48.5
AL7G36830 Arabidopsis lyrata HOM05D001718 ORTHO05D008006 2.0e-09 66.2 64 48.4
BcaNung04036 Brassica carinata HOM05D001718 ORTHO05D008006 2.0e-09 66.2 63 49.2
Cc03_g06830 Coffea canephora HOM05D001718 ORTHO05D008006 2.0e-09 66.2 63 52.4
COL.COLO4_16000 Corchorus olitorius HOM05D001718 ORTHO05D008006 2.6e-09 65.9 68 50.0
Glyma.20G199000 Glycine max HOM05D001718 ORTHO05D008006 2.6e-09 65.9 67 47.8
MD16G1230600 Malus domestica HOM05D001718 ORTHO05D008006 2.6e-09 65.9 66 50.0
Sp7g16370 Schrenkiella parvula HOM05D001718 ORTHO05D008006 2.6e-09 65.9 63 49.2
Dinv29785 Davidia involucrata HOM05D001718 ORTHO05D008006 3.4e-09 65.5 66 48.5
Lj5g0016567 Lotus japonicus HOM05D001718 ORTHO05D008006 3.4e-09 65.5 66 47.0
Carub.0007s2362 Capsella rubella HOM05D001718 ORTHO05D008006 5.7e-09 64.7 64 48.4
CARHR224460 Cardamine hirsuta HOM05D001718 ORTHO05D008006 5.7e-09 64.7 63 49.2
FAN12G0595 Fragaria x ananassa HOM05D001718 ORTHO05D008006 5.7e-09 64.7 66 50.0
RcHm_v2.0_Chr4g0396091 Rosa chinensis HOM05D001718 ORTHO05D008006 5.7e-09 64.7 66 50.0
DCAR_002290 Daucus carota HOM05D001718 ORTHO05D008006 7.5e-09 64.3 66 47.0
SEGI_06793 Sequoiadendron giganteum HOM05D002866 ORTHO05D014815 7.5e-09 64.3 49 75.5
FvH4_4g05180 Fragaria vesca HOM05D001718 ORTHO05D008006 9.8e-09 63.9 66 50.0
FAN17G2486 Fragaria x ananassa HOM05D001718 ORTHO05D008006 9.8e-09 63.9 66 50.0
Medtr1g073130 Medicago truncatula HOM05D001718 ORTHO05D008006 9.8e-09 63.9 66 47.0
Sed0022047 Sechium edule HOM05D001718 ORTHO05D008006 9.8e-09 63.9 66 47.0
THA.LOC104826103 Tarenaya hassleriana HOM05D001718 ORTHO05D008006 9.8e-09 63.9 106 39.6
TPR.G18554 Trifolium pratense HOM05D001718 ORTHO05D008006 9.8e-09 63.9 66 47.0
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.3e-08 63.5 100 39.0
Psat6g138640 Pisum sativum HOM05D001718 ORTHO05D008006 2.2e-08 62.8 66 45.5
Gorai.006G253900 Gossypium raimondii HOM05D001718 ORTHO05D008006 2.8e-08 62.4 67 49.3
SGA_v2.0_scaffold142G35679 Striga asiatica HOM05D001718 ORTHO05D008006 2.8e-08 62.4 101 39.6
Phvul.L001972 Phaseolus vulgaris HOM05D001718 ORTHO05D008006 3.7e-08 62.0 67 43.3
VMungo0720G0699 Vigna mungo HOM05D001718 ORTHO05D008006 4.9e-08 61.6 67 43.3
MELO3C023073.2 Cucumis melo HOM05D001718 ORTHO05D008006 6.3e-08 61.2 66 45.5
ECA248G0176 Erigeron canadensis HOM05D001718 ORTHO05D008006 6.3e-08 61.2 67 46.3
HanXRQChr01g0022541 Helianthus annuus HOM05D001718 ORTHO05D008006 6.3e-08 61.2 67 44.8
Lsat_1_v5_gn_1_76140 Lactuca sativa HOM05D001718 ORTHO05D008006 6.3e-08 61.2 67 47.8
Actinidia35932 Actinidia chinensis HOM05D001718 ORTHO05D008006 8.3e-08 60.8 57 50.9
CDE05G2223 Ceratophyllum demersum HOM05D001718 ORTHO05D008006 8.3e-08 60.8 66 43.9
Gohir.A09G230100 Gossypium hirsutum HOM05D001718 ORTHO05D008006 8.3e-08 60.8 67 49.3
Hund24866 Selenicereus undatus HOM05D001718 ORTHO05D008006 8.3e-08 60.8 63 44.4
Thecc.04G268900 Theobroma cacao HOM05D001718 ORTHO05D008006 8.3e-08 60.8 67 46.3
Zm00001eb258790 Zea mays HOM05D001718 ORTHO05D008006 1.1e-07 60.5 66 45.5
MSTRG.9844 Avicennia marina HOM05D001718 ORTHO05D008006 1.8e-07 59.7 115 36.5
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.8e-07 59.7 100 38.0
Duzib151G0805 Durio zibethinus HOM05D001718 ORTHO05D008006 1.8e-07 59.7 118 36.4
Actinidia37386 Actinidia chinensis HOM05D001718 ORTHO05D008006 2.4e-07 59.3 62 48.4
EL10Ac3g06717 Beta vulgaris HOM05D001718 ORTHO05D008006 2.4e-07 59.3 64 46.9
CsaV3_2G012180 Cucumis sativus L. HOM05D001718 ORTHO05D008006 3.1e-07 58.9 66 43.9
Sc13g0003030 Simmondsia chinensis HOM05D001718 ORTHO05D008006 3.1e-07 58.9 63 49.2
SalBow2G0821 Salvia bowleyana HOM05D001718 ORTHO05D008006 4.1e-07 58.5 66 45.5
SMO201G0124 Selaginella moellendorffii HOM05D001718 ORTHO05D008006 4.1e-07 58.5 66 45.5
CBR_g4874 Chara braunii HOM05D001718 ORTHO05D008006 7.0e-07 57.8 102 36.3
SEGI_07274 Sequoiadendron giganteum HOM05D009724 ORTHO05D014815 1.2e-06 57.0 86 48.8
HPP92_022078 Vanilla planifolia HOM05D001718 ORTHO05D008006 5.9e-06 54.7 63 46.0


User provided reference genes

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