Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18689 Sequoiadendron giganteum HOM05D003320 ORTHO05D003941 2.5e-59 231.9 116 100.0
ATR0827G154 Amborella trichopoda HOM05D003320 ORTHO05D003941 7.4e-27 124.0 106 61.3
Nn3g17480 Nelumbo nucifera HOM05D003320 ORTHO05D003941 1.1e-22 110.2 103 56.3
Aqoxy3G03660 Aquilegia oxysepala HOM05D003320 ORTHO05D003941 5.5e-22 107.8 74 70.3
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 9.4e-22 107.1 114 50.0
CDE06G2715 Ceratophyllum demersum HOM05D003320 ORTHO05D003941 1.6e-21 106.3 102 58.8
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 2.7e-21 105.5 103 53.4
CDE04G0470 Ceratophyllum demersum HOM05D003320 ORTHO05D003941 6.1e-21 104.4 108 56.5
Pp3c16_23230 Physcomitrium patens HOM05D003320 ORTHO05D003941 5.2e-20 101.3 70 74.3
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 1.2e-19 100.1 84 63.1
Nn4g23462 Nelumbo nucifera HOM05D003320 ORTHO05D003941 1.5e-19 99.8 105 54.3
vmacro17621 Vaccinium macrocarpon HOM05D003320 ORTHO05D003941 1.3e-18 96.7 72 70.8
Hma1.2p1_0060F.1_g032950 Hydrangea macrophylla HOM05D003320 ORTHO05D003941 2.2e-18 95.9 75 66.7
Sc12g0007080 Simmondsia chinensis HOM05D003320 ORTHO05D003941 2.2e-18 95.9 75 66.7
Hund02571 Selenicereus undatus HOM05D003320 ORTHO05D003941 3.7e-18 95.1 72 66.7
Rhsim08G0144000 Rhododendron simsii HOM05D003320 ORTHO05D003941 4.8e-18 94.7 103 55.3
AUR62021532 Chenopodium quinoa HOM05D003320 ORTHO05D003941 1.8e-17 92.8 82 58.5
AUR62039651 Chenopodium quinoa HOM05D003320 ORTHO05D003941 4.1e-17 91.7 82 57.3
DCAR_011563 Daucus carota HOM05D003320 ORTHO05D003941 7.0e-17 90.9 77 62.3
GSVIVG01008118001 Vitis vinifera HOM05D003320 ORTHO05D003941 9.1e-17 90.5 72 63.9
Glyma.06G204800 Glycine max HOM05D003320 ORTHO05D003941 3.5e-16 88.6 67 67.2
Phvul.003G183500 Phaseolus vulgaris HOM05D003320 ORTHO05D003941 4.5e-16 88.2 70 68.6
VMungo1215G1878 Vigna mungo HOM05D003320 ORTHO05D003941 4.5e-16 88.2 70 68.6
CSS0013666 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 5.9e-16 87.8 103 52.4
SMO032G0005 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 5.9e-16 87.8 87 57.5
TWI81G0870 Tripterygium wilfordii HOM05D003320 ORTHO05D003941 5.9e-16 87.8 82 62.2
Gohir.D03G097300 Gossypium hirsutum HOM05D003320 ORTHO05D003941 7.7e-16 87.4 79 64.6
Gorai.003G102300 Gossypium raimondii HOM05D003320 ORTHO05D003941 7.7e-16 87.4 79 64.6
Thecc.03G104500 Theobroma cacao HOM05D003320 ORTHO05D003941 7.7e-16 87.4 79 63.3
COL.COLO4_24318 Corchorus olitorius HOM05D003320 ORTHO05D003941 1.0e-15 87.0 79 64.6
Gohir.A03G070900 Gossypium hirsutum HOM05D003320 ORTHO05D003941 1.0e-15 87.0 79 64.6
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 1.0e-15 87.0 88 55.7
Eucgr.B00616 Eucalyptus grandis HOM05D003320 ORTHO05D003941 1.3e-15 86.7 82 62.2
Duzib205G0721 Durio zibethinus HOM05D003320 ORTHO05D003941 1.7e-15 86.3 79 63.3
Lalb_Chr13g0302781 Lupinus albus HOM05D003320 ORTHO05D003941 1.7e-15 86.3 69 68.1
EL10Ac5g11158 Beta vulgaris HOM05D003320 ORTHO05D003941 2.9e-15 85.5 83 56.6
Migut.D01756 Erythranthe guttata HOM05D003320 ORTHO05D003941 2.9e-15 85.5 115 48.7
Lj9A439T50 Lonicera japonica HOM05D003320 ORTHO05D003941 2.9e-15 85.5 105 51.4
Cc00_g03390 Coffea canephora HOM05D003320 ORTHO05D003941 3.8e-15 85.1 72 61.1
DCAR_023161 Daucus carota HOM05D003320 ORTHO05D003941 3.8e-15 85.1 104 51.9
Glyma.05G019700 Glycine max HOM05D003320 ORTHO05D003941 5.0e-15 84.7 67 65.7
Glyma.17G080100 Glycine max HOM05D003320 ORTHO05D003941 5.0e-15 84.7 67 65.7
Prupe.5G207100 Prunus persica HOM05D003320 ORTHO05D003941 5.0e-15 84.7 77 62.3
Sabra12G0045000 Salix brachista HOM05D003320 ORTHO05D003941 5.0e-15 84.7 82 61.0
CsaV3_1G003060 Cucumis sativus L. HOM05D003320 ORTHO05D003941 6.5e-15 84.3 73 64.4
Lj4g0022383 Lotus japonicus HOM05D003320 ORTHO05D003941 6.5e-15 84.3 70 65.7
MELO3C017236.2 Cucumis melo HOM05D003320 ORTHO05D003941 8.5e-15 84.0 79 60.8
Psat4g047520 Pisum sativum HOM05D003320 ORTHO05D003941 8.5e-15 84.0 72 63.9
RcHm_v2.0_Chr7g0183311 Rosa chinensis HOM05D003320 ORTHO05D003941 8.5e-15 84.0 72 63.9
TPR.G1978 Trifolium pratense HOM05D003320 ORTHO05D003941 8.5e-15 84.0 74 60.8
MSTRG.4445 Avicennia marina HOM05D003320 ORTHO05D003941 1.1e-14 83.6 114 48.2
Dinv22765 Davidia involucrata HOM05D003320 ORTHO05D003941 1.1e-14 83.6 104 50.0
FAN08G2691 Fragaria x ananassa HOM05D003320 ORTHO05D003941 1.1e-14 83.6 72 63.9
Lalb_Chr12g0197291 Lupinus albus HOM05D003320 ORTHO05D003941 1.1e-14 83.6 69 65.2
Sabra15G0084900 Salix brachista HOM05D003320 ORTHO05D003941 1.1e-14 83.6 82 58.5
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.5e-14 83.2 87 55.2
Gohir.D12G186400 Gossypium hirsutum HOM05D003320 ORTHO05D003941 1.9e-14 82.8 79 60.8
Gorai.008G199800 Gossypium raimondii HOM05D003320 ORTHO05D003941 1.9e-14 82.8 79 60.8
Potri.012G062100 Populus trichocarpa HOM05D003320 ORTHO05D003941 1.9e-14 82.8 82 58.5
FvH4_5g13650 Fragaria vesca HOM05D003320 ORTHO05D003941 2.5e-14 82.4 72 62.5
FAN13G0636 Fragaria x ananassa HOM05D003320 ORTHO05D003941 2.5e-14 82.4 72 62.5
FAN18G0159 Fragaria x ananassa HOM05D003320 ORTHO05D003941 2.5e-14 82.4 72 62.5
HanXRQChr09g0270371 Helianthus annuus HOM05D003320 ORTHO05D003941 2.5e-14 82.4 108 46.3
Sed0009849 Sechium edule HOM05D003320 ORTHO05D003941 2.5e-14 82.4 78 59.0
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 2.5e-14 82.4 103 46.6
arahy.Tifrunner.gnm1.ann1.16QCS4 Arachis hypogaea HOM05D003320 ORTHO05D003941 3.2e-14 82.0 74 62.2
arahy.Tifrunner.gnm1.ann1.XBA6AL Arachis hypogaea HOM05D003320 ORTHO05D003941 3.2e-14 82.0 74 62.2
Migut.L00877 Erythranthe guttata HOM05D003320 ORTHO05D003941 3.2e-14 82.0 103 51.5
MD14G1213900 Malus domestica HOM05D003320 ORTHO05D003941 3.2e-14 82.0 77 61.0
Ca_21762_v3 Cicer arietinum L. HOM05D003320 ORTHO05D003941 4.2e-14 81.6 63 63.5
Glyma.04G160700 Glycine max HOM05D003320 ORTHO05D003941 4.2e-14 81.6 67 62.7
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.2e-14 81.6 91 53.8
TWI60G0048 Tripterygium wilfordii HOM05D003320 ORTHO05D003941 4.2e-14 81.6 72 63.9
TWI60G1142 Tripterygium wilfordii HOM05D003320 ORTHO05D003941 4.2e-14 81.6 72 63.9
Atru.chr9.522 Acer truncatum HOM05D003320 ORTHO05D003941 7.2e-14 80.9 80 58.8
Duzib068G0415 Durio zibethinus HOM05D000874 ORTHO05D003941 7.2e-14 80.9 79 60.8
Gohir.A12G183500 Gossypium hirsutum HOM05D003320 ORTHO05D003941 7.2e-14 80.9 78 60.3
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 7.2e-14 80.9 76 59.2
Manes.06G082800 Manihot esculenta HOM05D003320 ORTHO05D003941 7.2e-14 80.9 72 62.5
Oeu057198.3 Olea europaea HOM05D003320 ORTHO05D003941 7.2e-14 80.9 111 45.9
AagrBONN_evm.TU.Sc2ySwM_117.209 Anthoceros agrestis HOM05D003320 ORTHO05D003941 9.4e-14 80.5 103 45.6
MD06G1203300 Malus domestica HOM05D003320 ORTHO05D003941 9.4e-14 80.5 77 59.7
CSS0049494 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 1.2e-13 80.1 112 45.5
CANSAT25G3609 Cannabis sativa HOM05D003320 ORTHO05D003941 1.6e-13 79.7 80 57.5
Nitab4.5_0007160g0030 Nicotiana tabacum HOM05D003320 ORTHO05D003941 1.6e-13 79.7 74 58.1
Potri.015G059400 Populus trichocarpa HOM05D003320 ORTHO05D003941 1.6e-13 79.7 82 57.3
Ciclev10019467m.g Citrus clementina HOM05D003320 ORTHO05D003941 2.7e-13 79.0 107 52.3
Peaxi162Scf00201g00346 Petunia axillaris HOM05D003320 ORTHO05D003941 2.7e-13 79.0 72 58.3
VMungo1309G1392 Vigna mungo HOM05D003320 ORTHO05D003941 2.7e-13 79.0 71 66.2
CiPaw.11G055500 Carya illinoinensis HOM05D003320 ORTHO05D003941 3.6e-13 78.6 70 61.4
Medtr4g109680 Medicago truncatula HOM05D003320 ORTHO05D003941 3.6e-13 78.6 72 61.1
SMO032G0004 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.6e-13 78.6 87 52.9
Eucgr.B00619 Eucalyptus grandis HOM05D003320 ORTHO05D003941 4.7e-13 78.2 72 59.7
THA.LOC104808040 Tarenaya hassleriana HOM05D003320 ORTHO05D003941 4.7e-13 78.2 73 58.9
Thhalv10007275m.g Eutrema salsugineum HOM05D003320 ORTHO05D003941 6.1e-13 77.8 79 54.4
QL10p019950 Quercus lobata HOM05D003320 ORTHO05D003941 8.0e-13 77.4 70 61.4
SGA_v2.0_scaffold114G31918 Striga asiatica HOM05D003320 ORTHO05D003941 8.0e-13 77.4 73 57.5
TAR629G1284 Trochodendron aralioides HOM05D003320 ORTHO05D003941 8.0e-13 77.4 47 68.1
THA.LOC104813890 Tarenaya hassleriana HOM05D003320 ORTHO05D003941 1.0e-12 77.0 73 56.2
CARHR019230 Cardamine hirsuta HOM05D003320 ORTHO05D003941 1.8e-12 76.3 79 53.2
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 1.8e-12 76.3 104 48.1
TAR622G0583 Trochodendron aralioides HOM05D003320 ORTHO05D003941 1.8e-12 76.3 60 58.3
CAN.G1228.10 Capsicum annuum HOM05D003320 ORTHO05D003941 2.3e-12 75.9 78 52.6
Eucgr.B00621 Eucalyptus grandis HOM05D003320 ORTHO05D003941 2.3e-12 75.9 71 62.0
Lsat_1_v5_gn_6_60141 Lactuca sativa HOM05D003320 ORTHO05D003941 2.3e-12 75.9 88 51.1
Oeu057208.2 Olea europaea HOM05D003320 ORTHO05D003941 3.0e-12 75.5 111 45.0
Eucgr.B00617 Eucalyptus grandis HOM05D003320 ORTHO05D003941 4.0e-12 75.1 76 56.6
PGR083G0488 Punica granatum HOM05D003320 ORTHO05D003941 4.0e-12 75.1 72 58.3
Solyc03g114960.4 Solanum lycopersicum HOM05D003320 ORTHO05D003941 6.8e-12 74.3 78 51.3
Sopen03g034040 Solanum pennellii HOM05D003320 ORTHO05D003941 6.8e-12 74.3 78 51.3
Carub.0001s1824 Capsella rubella HOM05D003320 ORTHO05D003941 8.8e-12 73.9 79 53.2
BcaC05g25756 Brassica carinata HOM05D003320 ORTHO05D003941 2.0e-11 72.8 93 49.5
C05p16870 Brassica napus HOM05D003320 ORTHO05D003941 2.0e-11 72.8 79 51.9
BolC5t30390H Brassica oleracea HOM05D003320 ORTHO05D003941 2.0e-11 72.8 79 51.9
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 2.0e-11 72.8 71 49.3
Eucgr.B00620 Eucalyptus grandis HOM05D003320 ORTHO05D003941 2.0e-11 72.8 44 75.0
AL1G31050 Arabidopsis lyrata HOM05D003320 ORTHO05D003941 3.4e-11 72.0 79 51.9
AT1G18610 Arabidopsis thaliana HOM05D003320 ORTHO05D003941 4.4e-11 71.6 79 51.9
A08p30320 Brassica napus HOM05D003320 ORTHO05D003941 4.4e-11 71.6 79 50.6
BraA08t34965Z Brassica rapa HOM05D003320 ORTHO05D003941 4.4e-11 71.6 79 50.6
Phvul.009G202800 Phaseolus vulgaris HOM05D003320 ORTHO05D003941 4.4e-11 71.6 69 58.0
HPP92_006046 Vanilla planifolia HOM05D003320 ORTHO05D003941 4.4e-11 71.6 69 55.1
BcaC07g38926 Brassica carinata HOM05D003320 ORTHO05D003941 1.3e-10 70.1 79 49.4
C08p18770 Brassica napus HOM05D003320 ORTHO05D003941 1.3e-10 70.1 79 49.4
BolC8t49503H Brassica oleracea HOM05D003320 ORTHO05D003941 1.3e-10 70.1 79 49.4
Sp1g16580 Schrenkiella parvula HOM05D003320 ORTHO05D003941 1.3e-10 70.1 79 50.6
unitig_744.g24384 Utricularia gibba HOM05D003320 ORTHO05D003941 1.3e-10 70.1 112 42.0
HPP92_013434 Vanilla planifolia HOM05D003320 ORTHO05D003941 1.7e-10 69.7 72 52.8
HPP92_027115 Vanilla planifolia HOM05D003320 ORTHO05D003941 1.7e-10 69.7 72 52.8
Manes.14G087000 Manihot esculenta HOM05D003320 ORTHO05D003941 2.2e-10 69.3 77 53.2
Aa31LG7G3370 Aethionema arabicum HOM05D003320 ORTHO05D003941 3.7e-10 68.6 78 50.0
BraA06t24596Z Brassica rapa HOM05D003320 ORTHO05D003941 3.7e-10 68.6 93 48.4
A06p14720 Brassica napus HOM05D003320 ORTHO05D003941 6.3e-10 67.8 93 48.4
Thhalv10019464m.g Eutrema salsugineum HOM05D003320 ORTHO05D003941 6.3e-10 67.8 72 54.2
CAN.G1228.9 Capsicum annuum HOM05D003320 ORTHO05D003941 8.3e-10 67.4 78 47.4
SMO077G0003 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 8.3e-10 67.4 109 43.1
SMO149G0010 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 8.3e-10 67.4 75 52.0
BcaB07g31880 Brassica carinata HOM05D003320 ORTHO05D003941 1.1e-09 67.0 93 47.3
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 2.4e-09 65.9 72 51.4
AT1G74150 Arabidopsis thaliana HOM05D003320 ORTHO05D003941 5.4e-09 64.7 72 52.8
BcaB05g24831 Brassica carinata HOM05D003320 ORTHO05D003941 7.0e-09 64.3 75 50.7
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.2e-08 63.5 76 51.3
Nitab4.5_0001485g0040 Nicotiana tabacum HOM05D003320 ORTHO05D003941 1.6e-08 63.2 74 51.4
AL2G34050 Arabidopsis lyrata HOM05D003320 ORTHO05D003941 2.0e-08 62.8 70 51.4
Sp5g29360 Schrenkiella parvula HOM05D003320 ORTHO05D003941 2.7e-08 62.4 75 48.0
SMO274G0058 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.7e-08 62.4 44 63.6
Carub.0002s2096 Capsella rubella HOM05D003320 ORTHO05D003941 3.5e-08 62.0 72 51.4
BcaB05g24829 Brassica carinata HOM05D003320 ORTHO05D003941 1.0e-07 60.5 78 47.4
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.3e-07 60.1 72 48.6
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 2.9e-07 58.9 44 63.6
SMO116G0103 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 2.9e-07 58.9 44 61.4
BcaB05g24832 Brassica carinata HOM05D003320 ORTHO05D003941 3.8e-07 58.5 71 45.1
Lj1g0020090 Lotus japonicus HOM05D003320 ORTHO05D003941 3.8e-07 58.5 41 68.3
BcaC08g46820 Brassica carinata HOM05D003320 ORTHO05D003941 5.0e-07 58.2 75 45.3
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 5.0e-07 58.2 70 47.1
BolC6t39864H Brassica oleracea HOM05D003320 ORTHO05D003941 5.0e-07 58.2 75 45.3
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 6.6e-07 57.8 75 45.3
SMO103G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 1.1e-06 57.0 44 59.1
BcaB05g24833 Brassica carinata HOM05D003320 ORTHO05D003941 7.2e-06 54.3 71 42.3
SMO171G0124 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 7.2e-06 54.3 77 41.6


User provided reference genes

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