Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18640 Sequoiadendron giganteum HOM05D003949 ORTHO05D004504 6.6e-41 170.2 84 100.0
SEGI_23590 Sequoiadendron giganteum HOM05D003949 ORTHO05D004504 6.6e-41 170.2 84 100.0
QL09p031595 Quercus lobata HOM05D003949 ORTHO05D004504 5.6e-08 60.8 47 63.8
QL09p032129 Quercus lobata HOM05D003949 ORTHO05D004504 5.6e-08 60.8 47 63.8
QL09p032138 Quercus lobata HOM05D003949 ORTHO05D004504 5.6e-08 60.8 47 63.8
ATR1001G004 Amborella trichopoda HOM05D003949 ORTHO05D004504 7.3e-08 60.5 47 61.7
Cpa.g.sc64.155 Carica papaya HOM05D003949 ORTHO05D004504 7.3e-08 60.5 47 61.7
Duzib093G1312 Durio zibethinus HOM05D003949 ORTHO05D004504 7.3e-08 60.5 47 63.8
Thhalv10028837m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 7.3e-08 60.5 56 58.9
Nn1g08941 Nelumbo nucifera HOM05D003949 ORTHO05D004504 7.3e-08 60.5 47 61.7
Aa31LG9G14160 Aethionema arabicum HOM05D003949 ORTHO05D004504 9.6e-08 60.1 86 40.7
Duzib041G0733 Durio zibethinus HOM05D003949 ORTHO05D004504 9.6e-08 60.1 47 61.7
PSO528G0283 Papaver somniferum HOM05D003949 ORTHO05D004504 9.6e-08 60.1 82 42.7
Potri.005G183600 Populus trichocarpa HOM05D003949 ORTHO05D004504 9.6e-08 60.1 47 61.7
Thecc.08G134300 Theobroma cacao HOM05D003949 ORTHO05D004504 9.6e-08 60.1 47 61.7
Atru.chr13.1594 Acer truncatum HOM05D003949 ORTHO05D004504 1.2e-07 59.7 47 61.7
MBI06_g32174_MAGBIO Magnolia biondii HOM05D003949 ORTHO05D004504 1.2e-07 59.7 47 61.7
BcaC01g04773 Brassica carinata HOM05D003949 ORTHO05D004504 1.6e-07 59.3 56 57.1
A03p28040 Brassica napus HOM05D003949 ORTHO05D004504 1.6e-07 59.3 56 57.1
BolC3t15703H Brassica oleracea HOM05D003949 ORTHO05D004504 1.6e-07 59.3 56 57.1
BraA03t12017Z Brassica rapa HOM05D003949 ORTHO05D004504 1.6e-07 59.3 56 57.1
ClCG09G021850 Citrullus lanatus HOM05D003949 ORTHO05D004504 1.6e-07 59.3 47 59.6
MELO3C015709.2 Cucumis melo HOM05D003949 ORTHO05D004504 1.6e-07 59.3 47 59.6
CsaV3_7G022150 Cucumis sativus L. HOM05D003949 ORTHO05D004504 1.6e-07 59.3 47 59.6
Manes.18G083500 Manihot esculenta HOM05D003949 ORTHO05D004504 1.6e-07 59.3 47 61.7
Sabra02G0060500 Salix brachista HOM05D003949 ORTHO05D004504 1.6e-07 59.3 47 63.8
Sed0004108 Sechium edule HOM05D003949 ORTHO05D004504 1.6e-07 59.3 47 59.6
Gohir.A05G269300 Gossypium hirsutum HOM05D003949 ORTHO05D004504 2.1e-07 58.9 47 59.6
Os07g0258700 Oryza sativa ssp. japonica HOM05D003949 ORTHO05D004504 2.1e-07 58.9 47 63.8
Sp6g09480 Schrenkiella parvula HOM05D003949 ORTHO05D004504 2.1e-07 58.9 56 57.1
C03p33900 Brassica napus HOM05D003949 ORTHO05D004504 2.8e-07 58.5 47 61.7
Gohir.D05G271200 Gossypium hirsutum HOM05D003949 ORTHO05D004504 2.8e-07 58.5 47 59.6
Gorai.009G284100 Gossypium raimondii HOM05D003949 ORTHO05D004504 2.8e-07 58.5 47 59.6
PSO170G4419 Papaver somniferum HOM05D003949 ORTHO05D004504 2.8e-07 58.5 82 41.5
TWI32G1346 Tripterygium wilfordii HOM05D003949 ORTHO05D004504 2.8e-07 58.5 47 59.6
CARHR259500 Cardamine hirsuta HOM05D003949 ORTHO05D004504 3.6e-07 58.2 56 55.4
Ciclev10002113m.g Citrus clementina HOM05D003949 ORTHO05D004504 3.6e-07 58.2 47 59.6
COL.COLO4_36870 Corchorus olitorius HOM05D003949 ORTHO05D004504 3.6e-07 58.2 47 57.4
Potri.002G077000 Populus trichocarpa HOM05D003949 ORTHO05D004504 3.6e-07 58.2 47 61.7
BcaB01g02864 Brassica carinata HOM05D003949 ORTHO05D004504 4.7e-07 57.8 56 57.1
Gohir.A02G070300 Gossypium hirsutum HOM05D003949 ORTHO05D004504 4.7e-07 57.8 47 57.4
Sed0003495 Sechium edule HOM05D003949 ORTHO05D004504 6.2e-07 57.4 79 38.0
TPR.G6334 Trifolium pratense HOM05D003949 ORTHO05D004504 6.2e-07 57.4 79 40.5
unitig_26.g9909 Utricularia gibba HOM05D003949 ORTHO05D004504 6.2e-07 57.4 81 43.2
Carub.0006s2698 Capsella rubella HOM05D003949 ORTHO05D004504 8.1e-07 57.0 47 59.6
Eucgr.E00988 Eucalyptus grandis HOM05D003949 ORTHO05D004504 8.1e-07 57.0 80 40.0
Gohir.D02G077400 Gossypium hirsutum HOM05D003949 ORTHO05D004504 8.1e-07 57.0 74 39.2
EL10Ac1g01369 Beta vulgaris HOM05D003949 ORTHO05D004504 1.1e-06 56.6 47 59.6
GSVIVG01008796001 Vitis vinifera HOM05D003949 ORTHO05D004504 1.1e-06 56.6 47 61.7
AL6G42240 Arabidopsis lyrata HOM05D003949 ORTHO05D004504 1.4e-06 56.2 56 55.4
AT4G08455 Arabidopsis thaliana HOM05D003949 ORTHO05D004504 1.4e-06 56.2 56 55.4
CSS0001496 Camellia sinensis var. sinensis HOM05D003949 ORTHO05D004504 1.4e-06 56.2 47 59.6
Eucgr.L00413 Eucalyptus grandis HOM05D003949 ORTHO05D004504 1.4e-06 56.2 47 57.4
SGA_v2.0_scaffold28G11965 Striga asiatica HOM05D003949 ORTHO05D004504 1.4e-06 56.2 47 59.6
unitig_749.g13929 Utricularia gibba HOM05D003949 ORTHO05D004504 1.4e-06 56.2 47 59.6
Cfa018416 Carpinus fangiana HOM05D003949 ORTHO05D004504 1.8e-06 55.8 47 59.6
Haze_17645 Corylus avellana HOM05D003949 ORTHO05D004504 1.8e-06 55.8 47 59.6
Prupe.1G487700 Prunus persica HOM05D003949 ORTHO05D004504 1.8e-06 55.8 47 59.6
THA.LOC104808256 Tarenaya hassleriana HOM05D003949 ORTHO05D004504 1.8e-06 55.8 79 39.2
Aqoxy117s002 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 2.4e-06 55.5 47 57.4
Aqoxy3G01750 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 2.4e-06 55.5 47 57.4
Ca_16616_v3 Cicer arietinum L. HOM05D003949 ORTHO05D004504 2.4e-06 55.5 79 39.2
vmacro00872 Vaccinium macrocarpon HOM05D003949 ORTHO05D004504 2.4e-06 55.5 47 59.6
CiPaw.15G030200 Carya illinoinensis HOM05D003949 ORTHO05D004504 3.1e-06 55.1 89 37.1
Eucgr.E00983 Eucalyptus grandis HOM05D003949 ORTHO05D004504 3.1e-06 55.1 47 55.3
Lj4C664T4 Lonicera japonica HOM05D003949 ORTHO05D004504 3.1e-06 55.1 89 34.8
SEGI_15749 Sequoiadendron giganteum HOM05D003949 ORTHO05D004504 3.1e-06 55.1 49 61.2
Actinidia29493 Actinidia chinensis HOM05D003949 ORTHO05D004504 4.0e-06 54.7 47 57.4
MSTRG.1405 Avicennia marina HOM05D003949 ORTHO05D004504 4.0e-06 54.7 47 57.4
DCAR_003593 Daucus carota HOM05D003949 ORTHO05D004504 4.0e-06 54.7 47 59.6
Migut.C01075 Erythranthe guttata HOM05D003949 ORTHO05D004504 4.0e-06 54.7 79 41.8
Lalb_Chr11g0066221 Lupinus albus HOM05D003949 ORTHO05D004504 4.0e-06 54.7 47 55.3
MD15G1132500 Malus domestica HOM05D003949 ORTHO05D004504 4.0e-06 54.7 47 57.4
Medtr3g088660 Medicago truncatula HOM05D003949 ORTHO05D004504 4.0e-06 54.7 79 39.2
Psat5g084280 Pisum sativum HOM05D003949 ORTHO05D004504 4.0e-06 54.7 79 36.7
PGR042G2128 Punica granatum HOM05D003949 ORTHO05D004504 4.0e-06 54.7 47 57.4
Sopen02g010800 Solanum pennellii HOM05D003949 ORTHO05D004504 4.0e-06 54.7 47 61.7
CANSAT56G1102 Cannabis sativa HOM05D003949 ORTHO05D004504 5.2e-06 54.3 47 57.4
Oeu047169.1 Olea europaea HOM05D003949 ORTHO05D004504 5.2e-06 54.3 47 57.4
Rhsim11G0072500 Rhododendron simsii HOM05D003949 ORTHO05D004504 5.2e-06 54.3 47 55.3
AUR62007697 Chenopodium quinoa HOM05D003949 ORTHO05D004504 6.9e-06 53.9 47 57.4
AUR62013445 Chenopodium quinoa HOM05D003949 ORTHO05D004504 6.9e-06 53.9 47 57.4
Dinv27260 Davidia involucrata HOM05D003949 ORTHO05D004504 6.9e-06 53.9 47 57.4
ECA248G3438 Erigeron canadensis HOM05D003949 ORTHO05D004504 6.9e-06 53.9 47 53.2
Thhalv10016014m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 6.9e-06 53.9 47 57.4
Lj4A674G53 Lonicera japonica HOM05D003949 ORTHO05D004504 6.9e-06 53.9 89 34.8
CAN.G215.13 Capsicum annuum HOM05D003949 ORTHO05D004504 9.0e-06 53.5 47 59.6
Lsat_1_v5_gn_1_7940 Lactuca sativa HOM05D003949 ORTHO05D004504 9.0e-06 53.5 47 55.3
Nitab4.5_0000005g0360 Nicotiana tabacum HOM05D003949 ORTHO05D004504 9.0e-06 53.5 47 59.6
Nitab4.5_0000389g0100 Nicotiana tabacum HOM05D003949 ORTHO05D004504 9.0e-06 53.5 47 59.6
Peaxi162Scf00565g00310 Petunia axillaris HOM05D003949 ORTHO05D004504 9.0e-06 53.5 47 59.6
Solyc02g032510.3 Solanum lycopersicum HOM05D003949 ORTHO05D004504 9.0e-06 53.5 47 59.6


User provided reference genes

Program Settings