Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 5.0e-148 527.7 261 100.0
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 5.1e-84 315.1 239 62.3
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 6.7e-84 314.7 215 67.0
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 8.7e-84 314.3 230 63.0
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 8.7e-84 314.3 217 67.3
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 5.7e-83 311.6 217 66.4
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 2.8e-82 309.3 215 66.5
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 6.3e-82 308.1 215 65.6
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 6.3e-82 308.1 209 67.0
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 8.2e-82 307.8 249 58.2
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 8.2e-82 307.8 217 64.1
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 1.4e-81 307.0 217 65.0
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 1.8e-81 306.6 214 64.0
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 1.8e-81 306.6 259 58.7
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 2.4e-81 306.2 216 64.4
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 4.1e-81 305.4 218 63.8
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 4.1e-81 305.4 215 64.7
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 4.1e-81 305.4 217 63.6
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 6.9e-81 304.7 215 65.1
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 6.9e-81 304.7 216 64.8
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 6.9e-81 304.7 218 65.1
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.0e-81 304.3 214 65.0
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 9.0e-81 304.3 218 63.3
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 1.2e-80 303.9 213 66.7
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.2e-80 303.9 218 62.8
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 1.5e-80 303.5 241 58.9
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 1.5e-80 303.5 215 63.3
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 1.5e-80 303.5 218 63.3
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 2.0e-80 303.1 218 64.2
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 2.6e-80 302.8 215 63.7
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 3.4e-80 302.4 213 65.3
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 3.4e-80 302.4 218 65.1
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 3.4e-80 302.4 215 65.1
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 3.4e-80 302.4 217 64.1
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 3.4e-80 302.4 217 62.2
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 4.5e-80 302.0 217 65.0
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 4.5e-80 302.0 239 62.8
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 4.5e-80 302.0 214 65.0
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 4.5e-80 302.0 240 59.2
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 4.5e-80 302.0 231 62.3
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 4.5e-80 302.0 218 63.3
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 7.7e-80 301.2 215 64.2
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 7.7e-80 301.2 215 66.0
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.7e-80 301.2 214 64.5
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 7.7e-80 301.2 218 62.8
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 7.7e-80 301.2 218 62.8
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 1.0e-79 300.8 249 57.0
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 1.0e-79 300.8 215 62.8
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 1.0e-79 300.8 249 57.0
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 1.0e-79 300.8 216 63.4
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.3e-79 300.4 218 62.8
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 1.7e-79 300.1 218 62.8
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.7e-79 300.1 251 57.0
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 2.9e-79 299.3 250 58.4
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.9e-79 299.3 217 62.2
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 2.9e-79 299.3 215 65.1
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 5.0e-79 298.5 249 56.6
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 5.0e-79 298.5 239 58.6
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 6.5e-79 298.1 214 66.8
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 6.5e-79 298.1 227 61.7
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 6.5e-79 298.1 218 61.9
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 8.5e-79 297.7 217 63.6
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 1.1e-78 297.4 215 62.3
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 1.1e-78 297.4 213 64.3
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.9e-78 296.6 215 63.7
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.9e-78 296.6 217 62.7
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 1.9e-78 296.6 232 59.9
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 2.5e-78 296.2 218 61.9
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 2.5e-78 296.2 212 64.2
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 2.5e-78 296.2 217 64.5
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 3.2e-78 295.8 216 63.4
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 5.5e-78 295.0 227 61.7
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 5.5e-78 295.0 216 64.8
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 9.4e-78 294.3 217 62.2
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.2e-77 293.9 218 63.3
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 1.2e-77 293.9 216 62.5
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 1.6e-77 293.5 215 62.8
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.1e-77 293.1 215 61.9
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 2.1e-77 293.1 259 56.4
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 2.1e-77 293.1 256 57.8
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 2.7e-77 292.7 214 63.6
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 2.7e-77 292.7 215 63.3
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 2.7e-77 292.7 214 62.1
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.0e-76 290.8 217 60.8
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 1.0e-76 290.8 240 58.3
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 1.0e-76 290.8 223 59.6
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.4e-76 290.4 216 62.5
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 1.4e-76 290.4 217 59.9
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 2.3e-76 289.7 216 62.0
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 3.0e-76 289.3 251 57.8
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 3.0e-76 289.3 217 61.3
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.0e-76 289.3 216 62.0
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 3.9e-76 288.9 225 60.9
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 3.9e-76 288.9 217 61.8
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 3.9e-76 288.9 231 61.0
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 6.7e-76 288.1 218 61.5
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 6.7e-76 288.1 216 61.6
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 8.8e-76 287.7 217 62.7
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 1.5e-75 287.0 270 54.4
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.0e-75 286.6 217 61.8
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 2.5e-75 286.2 220 61.8
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 4.3e-75 285.4 216 61.6
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 9.7e-75 284.3 284 51.8
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 1.7e-74 283.5 216 63.4
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 3.7e-74 282.3 214 61.2
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 6.3e-74 281.6 231 58.9
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 6.3e-74 281.6 212 62.3
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 6.3e-74 281.6 247 54.7
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 1.4e-73 280.4 266 53.0
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 5.3e-73 278.5 196 66.3
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 1.5e-72 276.9 196 65.8
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.7e-71 273.5 219 58.9
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 1.4e-70 270.4 169 73.4
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 3.6e-69 265.8 239 54.8
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 3.0e-68 262.7 177 67.2
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.4e-65 253.1 217 58.1
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 5.3e-65 251.9 177 64.4
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 2.0e-64 250.0 172 68.0
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.6e-64 249.6 168 67.9
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.5e-62 243.8 168 64.3
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 1.0e-60 237.7 211 55.9
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 4.0e-60 235.7 173 62.4
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.1e-59 234.2 173 61.8
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 2.0e-59 233.4 215 52.6
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 3.1e-57 226.1 221 50.7
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.0e-51 206.8 215 49.3
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 7.0e-49 198.4 129 67.4
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 9.1e-49 198.0 217 47.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.5e-46 190.7 218 44.5
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 5.5e-46 188.7 128 63.3
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 2.3e-44 183.3 132 65.2
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 4.4e-43 179.1 214 43.0
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 1.7e-42 177.2 130 64.6
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 1.1e-41 174.5 222 45.5
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 8.0e-37 158.3 232 37.9
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 5.7e-35 152.1 108 64.8
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 3.5e-32 142.9 112 57.1
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 4.6e-32 142.5 253 36.0
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 3.6e-29 132.9 111 55.0
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 6.4e-26 122.1 168 42.9
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 3.2e-25 119.8 86 64.0
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 1.8e-20 104.0 79 60.8
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 4.1e-17 92.8 65 63.1
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.6e-16 90.9 82 51.2
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.9e-15 86.3 66 56.1
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 3.3e-14 83.2 50 76.0
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 1.9e-06 57.4 163 25.8
Pp3c1_38790 Physcomitrium patens HOM05D004915 ORTHO05D315101 2.5e-06 57.0 40 65.0


User provided reference genes

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