Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 4.3e-65 251.1 124 100.0
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.8e-47 192.6 123 70.7
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.1e-47 191.8 121 72.7
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 3.1e-47 191.8 121 71.1
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 5.3e-47 191.0 124 69.4
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 5.3e-47 191.0 121 72.7
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 9.0e-47 190.3 124 69.4
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.5e-46 189.5 123 69.9
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.5e-46 189.5 122 70.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.0e-46 189.1 124 69.4
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.0e-46 189.1 123 69.9
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.9e-46 187.6 124 66.9
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 5.9e-46 187.6 123 68.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 5.9e-46 187.6 123 68.3
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.3e-45 186.4 123 69.1
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.3e-45 186.4 123 66.7
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.7e-45 186.0 121 68.6
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.7e-45 186.0 123 66.7
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 3.8e-45 184.9 123 69.1
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 3.8e-45 184.9 124 67.7
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.8e-45 184.9 121 70.2
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.8e-45 184.9 121 70.2
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 3.8e-45 184.9 123 65.9
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 5.0e-45 184.5 123 68.3
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 5.0e-45 184.5 123 68.3
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 5.0e-45 184.5 121 68.6
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.0e-45 184.5 123 68.3
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 6.5e-45 184.1 123 67.5
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 8.5e-45 183.7 123 68.3
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 8.5e-45 183.7 122 66.4
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 8.5e-45 183.7 122 68.9
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.1e-44 183.3 122 63.1
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.1e-44 183.3 123 67.5
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.4e-44 183.0 123 66.7
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.4e-44 183.0 121 67.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.9e-44 182.6 121 69.4
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.9e-44 182.6 121 67.8
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.9e-44 182.6 121 67.8
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.9e-44 182.6 121 69.4
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 3.2e-44 181.8 122 63.9
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 4.2e-44 181.4 121 67.8
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 4.2e-44 181.4 121 68.6
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 4.2e-44 181.4 123 66.7
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.5e-44 181.0 123 64.2
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 7.2e-44 180.6 122 63.1
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 7.2e-44 180.6 122 62.3
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 7.2e-44 180.6 123 68.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 9.4e-44 180.3 122 63.1
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 9.4e-44 180.3 122 66.4
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 9.4e-44 180.3 122 66.4
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.2e-43 179.9 121 66.9
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.2e-43 179.9 124 66.9
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.2e-43 179.9 122 62.3
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.2e-43 179.9 121 68.6
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.6e-43 179.5 123 63.4
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-43 179.5 122 62.3
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.6e-43 179.5 123 67.5
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.6e-43 179.5 121 67.8
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.1e-43 179.1 121 63.6
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.1e-43 179.1 122 62.3
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.1e-43 179.1 122 62.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.1e-43 179.1 122 62.3
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 2.1e-43 179.1 119 68.9
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.1e-43 179.1 121 66.9
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.1e-43 179.1 123 63.4
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.7e-43 178.7 123 62.6
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 2.7e-43 178.7 123 62.6
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 2.7e-43 178.7 122 68.0
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.6e-43 178.3 123 67.5
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.6e-43 178.3 122 61.5
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.6e-43 178.3 121 66.1
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 4.6e-43 177.9 126 64.3
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 4.6e-43 177.9 121 66.1
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.1e-43 177.6 123 66.7
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 6.1e-43 177.6 123 63.4
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.9e-43 177.2 122 67.2
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 7.9e-43 177.2 123 65.9
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 7.9e-43 177.2 123 65.9
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 7.9e-43 177.2 121 66.1
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 7.9e-43 177.2 123 63.4
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 7.9e-43 177.2 122 68.0
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.0e-42 176.8 121 69.4
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.4e-42 176.4 123 65.9
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 1.4e-42 176.4 123 62.6
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.8e-42 176.0 121 67.8
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.3e-42 175.6 122 66.4
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.3e-42 175.6 123 64.2
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 3.0e-42 175.3 138 60.1
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 3.9e-42 174.9 123 65.0
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 5.1e-42 174.5 124 63.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 6.7e-42 174.1 123 61.0
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 8.8e-42 173.7 123 61.8
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.1e-41 173.3 122 65.6
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.5e-41 172.9 123 65.0
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.5e-41 172.9 121 65.3
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 2.0e-41 172.6 121 68.6
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 2.5e-41 172.2 121 64.5
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.5e-41 172.2 123 65.9
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 3.3e-41 171.8 123 61.8
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.3e-41 171.8 156 55.8
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 4.3e-41 171.4 123 63.4
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 4.3e-41 171.4 140 57.1
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 4.3e-41 171.4 121 59.5
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 4.3e-41 171.4 123 64.2
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 5.7e-41 171.0 121 64.5
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 7.4e-41 170.6 119 65.5
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.7e-40 168.3 156 55.1
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 3.7e-40 168.3 122 65.6
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 3.7e-40 168.3 124 63.7
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 3.7e-40 168.3 123 60.2
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 6.3e-40 167.5 122 56.6
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.1e-39 166.8 124 63.7
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.4e-39 166.4 121 66.1
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.8e-39 166.0 123 59.3
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 3.1e-39 165.2 121 62.8
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 5.3e-39 164.5 119 64.7
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.6e-38 162.2 135 56.3
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 3.4e-38 161.8 122 59.8
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 3.4e-38 161.8 146 54.1
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.0e-34 150.2 119 56.3
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-33 146.7 122 55.7
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.5e-33 146.4 118 61.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.5e-33 146.4 112 58.9
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 7.4e-33 144.1 118 60.2
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.7e-32 142.9 120 55.8
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 7.7e-30 134.0 122 54.1
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-28 130.2 122 47.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 9.4e-28 127.1 87 62.1
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.5e-25 119.8 129 44.2
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-23 113.2 90 51.1
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 8.8e-18 94.0 61 73.8
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 2.0e-14 82.8 55 60.0
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 2.5e-12 75.9 47 76.6
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.6e-11 73.2 40 85.0
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.4e-10 70.1 44 72.7
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.4e-10 70.1 44 72.7
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.8e-10 69.7 112 32.1
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 8.8e-10 67.4 40 77.5
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 8.8e-10 67.4 40 77.5
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.4e-09 65.5 111 32.4
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-08 63.5 51 47.1
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.8e-08 62.4 118 33.9
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 6.3e-08 61.2 47 57.4
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 3.1e-07 58.9 38 73.7
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 4.5e-06 55.1 77 32.5


User provided reference genes

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