Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.7e-85 318.2 159 100.0
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 3.3e-33 145.6 118 61.9
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 7.3e-33 144.4 76 89.5
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.6e-32 143.3 77 88.3
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 2.8e-32 142.5 81 85.2
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 3.6e-32 142.1 76 86.8
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 4.7e-32 141.7 86 79.1
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 6.2e-32 141.4 81 84.0
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 1.1e-31 140.6 76 86.8
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 1.4e-31 140.2 76 86.8
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.3e-31 139.4 76 86.8
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.3e-31 139.4 76 86.8
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.3e-31 139.4 76 86.8
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 2.3e-31 139.4 76 86.8
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 2.3e-31 139.4 76 85.5
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 2.3e-31 139.4 76 86.8
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 3.1e-31 139.0 76 86.8
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 3.1e-31 139.0 76 86.8
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 3.1e-31 139.0 76 86.8
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 4.0e-31 138.7 76 86.8
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.2e-31 138.3 76 85.5
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.2e-31 138.3 76 85.5
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 5.2e-31 138.3 76 85.5
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 6.8e-31 137.9 76 85.5
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 6.8e-31 137.9 76 85.5
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 6.8e-31 137.9 76 84.2
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 6.8e-31 137.9 76 84.2
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 6.8e-31 137.9 76 80.3
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 8.9e-31 137.5 76 84.2
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 8.9e-31 137.5 76 84.2
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 8.9e-31 137.5 76 84.2
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 8.9e-31 137.5 76 82.9
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 1.2e-30 137.1 76 82.9
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.2e-30 137.1 76 84.2
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.2e-30 137.1 76 85.5
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 1.2e-30 137.1 76 85.5
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 1.5e-30 136.7 74 86.5
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 1.5e-30 136.7 76 84.2
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.5e-30 136.7 80 81.2
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.5e-30 136.7 74 86.5
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 1.5e-30 136.7 76 84.2
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 2.0e-30 136.3 76 84.2
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 2.0e-30 136.3 76 84.2
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.0e-30 136.3 76 84.2
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.6e-30 136.0 76 84.2
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 2.6e-30 136.0 76 84.2
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 3.4e-30 135.6 76 84.2
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 3.4e-30 135.6 76 84.2
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 3.4e-30 135.6 76 84.2
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 3.4e-30 135.6 76 84.2
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 4.4e-30 135.2 76 84.2
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 4.4e-30 135.2 86 70.9
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 5.8e-30 134.8 76 85.5
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 5.8e-30 134.8 76 81.6
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 5.8e-30 134.8 80 82.5
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 5.8e-30 134.8 76 82.9
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 5.8e-30 134.8 76 84.2
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 5.8e-30 134.8 76 85.5
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 7.6e-30 134.4 76 84.2
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 7.6e-30 134.4 76 84.2
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 7.6e-30 134.4 76 82.9
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 7.6e-30 134.4 80 80.0
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 7.6e-30 134.4 76 81.6
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 7.6e-30 134.4 76 81.6
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 7.6e-30 134.4 76 82.9
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 9.9e-30 134.0 76 81.6
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 9.9e-30 134.0 76 82.9
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 9.9e-30 134.0 76 82.9
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 1.3e-29 133.7 76 82.9
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 1.3e-29 133.7 76 81.6
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 1.3e-29 133.7 76 82.9
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.3e-29 133.7 76 82.9
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.7e-29 133.3 76 82.9
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 1.7e-29 133.3 76 81.6
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 1.7e-29 133.3 76 82.9
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 1.7e-29 133.3 76 81.6
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.7e-29 133.3 74 83.8
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 1.7e-29 133.3 76 82.9
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 1.7e-29 133.3 76 84.2
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 2.2e-29 132.9 76 80.3
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 2.2e-29 132.9 76 81.6
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 2.2e-29 132.9 76 78.9
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 2.9e-29 132.5 76 84.2
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 2.9e-29 132.5 76 81.6
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 3.7e-29 132.1 76 82.9
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 3.7e-29 132.1 76 82.9
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.7e-29 132.1 76 81.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 6.4e-29 131.3 76 80.3
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 6.4e-29 131.3 76 80.3
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 6.4e-29 131.3 76 80.3
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 6.4e-29 131.3 76 80.3
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 6.4e-29 131.3 76 80.3
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 6.4e-29 131.3 76 81.6
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 6.4e-29 131.3 76 80.3
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 6.4e-29 131.3 76 78.9
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 8.4e-29 131.0 76 78.9
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 1.1e-28 130.6 76 80.3
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.4e-28 130.2 77 77.9
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.4e-28 130.2 76 80.3
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 2.4e-28 129.4 76 78.9
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 2.4e-28 129.4 76 78.9
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 3.2e-28 129.0 76 77.6
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 4.1e-28 128.6 76 80.3
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 4.1e-28 128.6 76 80.3
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 7.1e-28 127.9 76 77.6
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 9.2e-28 127.5 76 77.6
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 1.2e-27 127.1 76 78.9
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.2e-27 127.1 76 77.6
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.6e-27 126.7 76 77.6
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 1.6e-27 126.7 76 77.6
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 2.1e-27 126.3 76 78.9
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 2.1e-27 126.3 76 78.9
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 2.7e-27 125.9 101 64.4
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.7e-27 125.9 101 64.4
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 4.6e-27 125.2 76 77.6
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 4.6e-27 125.2 76 77.6
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 4.6e-27 125.2 76 77.6
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.0e-27 124.8 93 65.6
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.0e-26 124.0 76 75.0
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.1e-25 120.6 79 69.6
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.5e-25 120.2 65 87.7
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.5e-25 120.2 93 65.6
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.9e-25 119.8 76 75.0
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.9e-25 119.8 69 82.6
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.3e-25 118.6 104 60.6
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 8.4e-21 104.4 60 81.7
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.1e-20 104.0 95 63.2
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.1e-19 99.8 57 82.5
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 6.0e-11 71.6 66 56.1
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 7.9e-11 71.2 45 75.6
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.1e-09 67.4 62 54.8
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.3e-09 65.5 56 60.7


User provided reference genes

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