Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 0.0e+00 1283.5 640 100.0
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 6.1e-163 578.6 558 54.3
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 4.8e-160 568.9 554 54.3
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 4.8e-160 568.9 574 54.4
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 1.4e-159 567.4 559 54.7
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 4.5e-158 562.4 559 54.2
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 7.7e-158 561.6 568 52.5
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 1.3e-157 560.8 558 55.7
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 6.5e-157 558.5 595 52.1
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 1.1e-156 557.8 559 54.6
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.1e-156 557.8 575 52.7
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 1.5e-156 557.4 558 53.6
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 5.5e-156 555.4 558 51.8
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 1.6e-155 553.9 562 53.6
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 2.1e-155 553.5 560 52.7
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 2.7e-155 553.1 561 53.7
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 6.1e-155 552.0 559 53.7
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 1.0e-154 551.2 556 52.7
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 2.3e-154 550.1 556 54.5
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 4.0e-154 549.3 555 52.4
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 5.2e-154 548.9 554 52.2
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 8.8e-154 548.1 556 53.6
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 1.5e-153 547.4 563 51.5
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 2.0e-153 547.0 556 53.2
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 2.0e-153 547.0 590 51.0
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 2.6e-153 546.6 556 53.2
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 2.6e-153 546.6 586 51.9
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 4.4e-153 545.8 566 52.5
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 9.8e-153 544.7 558 54.1
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 2.2e-152 543.5 564 52.1
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 2.8e-152 543.1 559 53.7
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 3.7e-152 542.7 567 51.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 3.7e-152 542.7 584 51.2
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 4.8e-152 542.3 570 52.1
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 4.8e-152 542.3 569 51.1
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 4.8e-152 542.3 558 52.5
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 6.3e-152 542.0 554 52.0
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 6.3e-152 542.0 558 53.8
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 1.1e-151 541.2 561 54.2
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 1.8e-151 540.4 575 51.3
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 2.4e-151 540.0 563 51.5
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 2.4e-151 540.0 562 52.3
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 3.1e-151 539.7 559 53.8
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 9.1e-151 538.1 562 52.8
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 9.1e-151 538.1 585 50.8
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.6e-150 537.3 562 51.2
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 2.7e-150 536.6 563 53.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 2.7e-150 536.6 582 51.0
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 2.7e-150 536.6 556 52.9
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 4.5e-150 535.8 556 52.3
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 5.9e-150 535.4 560 52.5
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 7.7e-150 535.0 573 51.3
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 7.7e-150 535.0 566 51.9
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 1.0e-149 534.6 589 50.8
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 1.0e-149 534.6 590 50.3
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 1.3e-149 534.3 593 50.6
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 1.7e-149 533.9 590 50.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 1.7e-149 533.9 567 52.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.2e-149 533.5 561 51.7
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 2.2e-149 533.5 568 53.0
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 6.5e-149 531.9 554 51.8
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 1.9e-148 530.4 565 52.0
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 1.9e-148 530.4 565 52.0
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 2.5e-148 530.0 565 52.4
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 3.2e-148 529.6 556 52.0
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 3.2e-148 529.6 560 52.0
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 3.2e-148 529.6 557 52.4
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 4.2e-148 529.3 565 51.9
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 4.2e-148 529.3 565 51.9
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 5.5e-148 528.9 563 51.3
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 9.4e-148 528.1 558 52.5
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 1.2e-147 527.7 557 52.6
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 1.6e-147 527.3 553 51.7
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 2.7e-147 526.6 553 50.8
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 2.7e-147 526.6 577 50.3
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 3.6e-147 526.2 565 51.7
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 4.7e-147 525.8 554 51.8
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 6.1e-147 525.4 553 51.0
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 6.1e-147 525.4 569 51.3
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 1.0e-146 524.6 596 49.0
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 1.8e-146 523.9 558 52.0
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 2.3e-146 523.5 566 51.6
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 3.0e-146 523.1 562 52.3
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.0e-146 522.7 553 50.8
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 6.8e-146 521.9 559 50.3
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.4e-145 519.6 610 48.5
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 4.4e-145 519.2 563 51.3
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 2.2e-144 516.9 585 48.7
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 6.3e-144 515.4 569 51.3
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 1.1e-143 514.6 555 51.0
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 1.1e-143 514.6 551 50.6
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 1.8e-143 513.8 564 51.2
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 3.1e-143 513.1 556 52.0
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 9.1e-143 511.5 573 51.3
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 9.1e-143 511.5 565 50.8
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 2.0e-142 510.4 560 51.4
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 1.0e-141 508.1 551 50.1
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 5.0e-141 505.8 625 47.2
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 6.6e-141 505.4 546 51.5
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 8.6e-141 505.0 558 49.3
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 8.6e-141 505.0 559 48.5
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 1.9e-140 503.8 565 51.0
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 1.9e-140 503.8 554 49.6
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 3.3e-140 503.1 580 48.6
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 7.2e-140 501.9 549 49.4
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 1.6e-139 500.7 533 51.6
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 2.1e-139 500.4 555 49.5
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 1.4e-138 497.7 533 51.8
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 3.0e-138 496.5 556 50.0
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 6.8e-138 495.4 580 47.8
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 1.5e-137 494.2 574 48.3
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 3.4e-137 493.0 558 50.2
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 1.1e-135 488.0 568 48.8
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 1.1e-135 488.0 554 48.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.5e-134 483.0 580 47.6
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 1.7e-133 480.7 579 47.5
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 7.3e-132 475.3 551 48.6
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 6.2e-131 472.2 556 47.8
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 6.2e-131 472.2 544 48.5
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 6.8e-130 468.8 562 48.2
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 8.9e-130 468.4 610 46.4
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 4.1e-127 459.5 581 45.3
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 4.3e-124 449.5 558 46.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 7.1e-119 432.2 680 40.7
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 6.0e-118 429.1 581 44.9
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 1.7e-117 427.6 693 40.0
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.4e-114 417.9 602 41.7
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 3.4e-113 413.3 544 45.2
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 4.6e-110 402.9 557 44.2
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 1.3e-109 401.4 587 43.8
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.0e-109 400.2 566 43.5
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.9e-103 380.9 507 45.0
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 7.8e-102 375.6 488 45.1
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.1e-91 340.9 546 39.0
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.5e-89 334.7 574 36.8
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 4.1e-74 283.5 558 35.1
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.4e-42 178.7 234 40.6
SEGI_29740 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 2.5e-31 141.4 75 88.0
SEGI_04435 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 1.2e-30 139.0 75 86.7
SEGI_41053 Sequoiadendron giganteum HOM05D002761 ORTHO05D003351 1.2e-30 139.0 75 88.0
SEGI_39099 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 1.6e-30 138.7 75 85.3
SEGI_26689 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 2.1e-30 138.3 133 55.6
SEGI_34793 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 1.0e-29 136.0 78 82.1
SEGI_39819 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 2.2e-27 128.3 75 78.7
SEGI_04133 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 2.0e-25 121.7 68 83.8
SEGI_22096 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 4.7e-22 110.5 62 82.3
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.3e-21 108.2 64 81.2
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-19 102.1 64 76.6
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 8.3e-19 99.8 83 60.2
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 3.2e-18 97.8 64 73.4
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 7.0e-18 96.7 64 71.9
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 8.6e-16 89.7 64 67.2
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 5.6e-15 87.0 176 34.1
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 3.6e-14 84.3 192 35.9
SEGI_34332 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 6.4e-11 73.6 65 58.5
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.0e-08 66.2 53 62.3
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 6.6e-08 63.5 106 29.2
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.8e-06 58.2 101 43.6
SEGI_39986 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.7e-06 57.4 27 92.6


User provided reference genes

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