Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 0.0e+00 1540.0 803 100.0
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.6e-293 1012.7 816 65.8
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 3.9e-284 981.5 816 64.3
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 6.7e-284 980.7 813 64.5
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.5e-283 979.5 815 63.4
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.3e-282 976.5 816 63.6
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 6.3e-282 974.2 814 63.5
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 2.5e-267 925.6 778 64.8
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 2.6e-264 915.6 806 61.7
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 3.4e-264 915.2 817 60.8
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 8.5e-263 910.6 815 61.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 1.2e-261 906.7 816 61.8
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 1.8e-260 902.9 812 60.3
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 2.3e-260 902.5 813 60.4
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 2.3e-260 902.5 816 61.5
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 3.9e-260 901.7 817 60.2
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 3.9e-260 901.7 815 61.6
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 2.6e-259 899.0 816 60.0
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 1.3e-258 896.7 811 60.9
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 2.2e-258 896.0 807 60.7
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 6.3e-258 894.4 818 60.1
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.6e-256 889.8 795 60.8
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 7.7e-256 887.5 818 59.7
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 1.3e-255 886.7 815 59.5
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 3.8e-255 885.2 806 60.8
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 8.5e-255 884.0 816 59.6
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 8.5e-255 884.0 806 59.9
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 1.5e-254 883.2 811 60.3
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.5e-254 881.3 821 58.8
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 2.1e-253 879.4 809 59.8
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 1.4e-252 876.7 858 56.8
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 2.3e-252 875.9 804 59.6
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 6.7e-252 874.4 806 59.2
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 6.7e-252 874.4 811 58.9
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 6.7e-252 874.4 806 58.7
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 1.5e-251 873.2 810 59.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 3.3e-251 872.1 811 58.9
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.7e-251 871.3 806 59.1
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 2.8e-250 869.0 815 58.9
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 3.7e-250 868.6 804 59.6
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 8.2e-250 867.5 817 58.9
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.1e-249 867.1 815 57.3
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.8e-249 866.3 807 58.9
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.4e-249 865.9 815 59.4
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 3.1e-249 865.5 815 58.3
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 4.1e-249 865.1 777 60.2
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.3e-249 864.8 820 58.0
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 5.3e-249 864.8 816 57.7
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 9.1e-249 864.0 811 57.5
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.2e-248 863.6 808 58.8
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 2.0e-248 862.8 809 57.6
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 2.7e-248 862.4 815 57.1
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 5.9e-248 861.3 809 57.5
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 1.0e-247 860.5 815 58.4
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 1.0e-247 860.5 803 57.5
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.0e-247 860.5 804 57.6
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.7e-247 859.8 806 57.9
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 2.9e-247 859.0 817 56.7
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 5.0e-247 858.2 888 55.4
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 8.5e-247 857.4 807 59.0
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 8.5e-247 857.4 815 57.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 3.2e-246 855.5 815 57.8
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 5.5e-246 854.7 815 57.3
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 2.1e-245 852.8 805 57.6
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 3.0e-244 849.0 807 57.5
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 5.2e-244 848.2 810 58.4
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 2.6e-243 845.9 816 56.1
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 4.4e-243 845.1 820 57.1
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 5.7e-243 844.7 815 56.8
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 2.2e-242 842.8 807 57.1
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 2.2e-242 842.8 807 57.1
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 4.8e-242 841.6 807 57.5
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 4.8e-242 841.6 807 57.5
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.1e-241 840.5 825 57.0
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 2.4e-241 839.3 808 57.8
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 3.1e-241 839.0 807 57.2
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 3.1e-241 839.0 816 57.5
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 1.6e-240 836.6 811 57.3
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 3.5e-240 835.5 806 57.1
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 5.0e-239 831.6 804 56.3
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 8.5e-239 830.9 803 57.0
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 8.5e-239 830.9 816 57.0
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 1.1e-238 830.5 818 56.5
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.2e-237 827.0 807 57.1
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 2.7e-237 825.9 784 58.4
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 3.6e-237 825.5 669 65.8
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 3.0e-236 822.4 816 56.6
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 7.5e-235 817.8 861 54.0
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 2.2e-234 816.2 818 55.9
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 2.8e-234 815.8 816 55.5
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.7e-234 815.5 817 55.8
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.3e-231 806.2 798 56.3
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.3e-231 806.2 816 54.7
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.6e-231 804.7 816 54.4
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 2.5e-230 802.7 913 51.7
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 1.0e-228 797.3 814 55.5
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 7.0e-225 784.6 643 63.6
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 3.5e-224 782.3 816 53.9
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.0e-223 780.8 642 63.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.5e-222 776.9 642 63.6
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 7.3e-222 774.6 869 52.2
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 9.8e-219 764.2 813 53.4
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.3e-218 763.8 807 54.0
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 6.4e-218 761.5 794 54.8
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.9e-217 760.0 816 52.6
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.2e-217 759.2 836 51.4
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.2e-217 759.2 836 51.4
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 5.4e-217 758.4 807 54.2
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.4e-212 743.8 807 53.5
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.4e-209 733.8 808 52.7
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.5e-206 723.8 798 51.4
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.2e-205 720.7 740 53.9
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.6e-200 703.7 836 48.9
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.7e-199 700.3 809 51.9
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 8.1e-197 691.4 835 48.6
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 1.1e-190 671.0 834 48.1
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.1e-189 666.8 724 54.0
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.4e-185 652.1 649 55.2
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.1e-169 601.3 662 51.7
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 5.5e-169 599.0 639 54.5
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 5.5e-153 545.8 480 61.2
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 4.5e-147 526.2 533 55.5
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 8.5e-146 521.9 458 60.5
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 6.5e-138 495.7 436 59.9
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 9.4e-137 491.9 611 48.3
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 8.9e-119 432.2 618 43.2
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 1.2e-102 378.6 425 52.2
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 7.8e-91 339.3 764 33.8
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 4.8e-72 276.9 615 36.1
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 6.4e-69 266.5 497 39.2
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 3.2e-68 264.2 428 44.2
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 4.3e-65 253.8 206 66.0
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 4.5e-62 243.8 291 53.3
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 5.8e-62 243.4 196 66.3
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 9.9e-62 242.7 196 66.3
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 9.9e-62 242.7 196 66.3
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 2.7e-59 234.6 200 65.0
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 8.2e-56 223.0 208 59.1
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.6e-48 198.7 237 46.8
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 3.4e-38 164.5 339 36.6
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 4.5e-38 164.1 114 70.2
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.3e-37 162.5 166 51.2
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 2.5e-36 158.3 132 61.4
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 1.3e-29 136.0 77 90.9
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.2e-29 135.2 204 43.1
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 3.2e-28 131.3 86 70.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 7.2e-28 130.2 144 54.9
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.7e-27 128.3 131 50.4
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.7e-27 127.5 352 30.4
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.0e-26 126.3 82 68.3
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.0e-26 126.3 82 68.3
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 5.3e-23 114.0 75 78.7
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-15 89.7 189 36.5
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.1e-15 88.2 147 34.0
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 5.3e-15 87.4 80 56.2
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 4.5e-14 84.3 57 73.7
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 5.5e-12 77.4 64 57.8
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.2e-11 76.3 83 50.6
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 6.1e-11 73.9 109 43.1
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 6.1e-11 73.9 52 78.8
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 1.4e-10 72.8 52 76.9
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 1.8e-10 72.4 76 56.6
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.0e-10 71.6 73 49.3
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 5.2e-10 70.9 53 62.3
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 5.7e-09 67.4 51 72.5
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.2e-08 65.5 111 44.1
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 4.8e-08 64.3 59 52.5
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 6.3e-08 63.9 48 70.8
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.1e-07 61.6 57 64.9
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 4.1e-07 61.2 77 44.2


User provided reference genes

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