Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18084 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 2.2e-70 268.9 134 100.0
SEGI_40682 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 4.9e-38 161.4 93 80.6
SEGI_30099 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 2.6e-23 112.5 63 84.1
Cc05_g02550 Coffea canephora HOM05D003187 ORTHO05D003630 5.6e-18 94.7 61 73.8
ATR0686G248 Amborella trichopoda HOM05D003187 ORTHO05D003630 7.3e-18 94.4 77 61.0
Cc05_g02410 Coffea canephora HOM05D003187 ORTHO05D003630 7.3e-18 94.4 61 72.1
Dinv20950 Davidia involucrata HOM05D003187 ORTHO05D003630 1.6e-17 93.2 61 72.1
Dinv20993 Davidia involucrata HOM05D003187 ORTHO05D003630 1.6e-17 93.2 61 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2882 Anthoceros agrestis HOM05D003187 ORTHO05D003630 3.6e-17 92.0 61 67.2
ATR0026G045 Amborella trichopoda HOM05D003187 ORTHO05D003630 6.2e-17 91.3 61 70.5
MBI17_g24519_MAGBIO Magnolia biondii HOM05D003187 ORTHO05D003630 8.1e-17 90.9 76 56.6
TAR369G0547 Trochodendron aralioides HOM05D003187 ORTHO05D003630 8.1e-17 90.9 61 70.5
CAN.G584.39 Capsicum annuum HOM05D003187 ORTHO05D003630 1.1e-16 90.5 61 67.2
Solyc07g006530.3 Solanum lycopersicum HOM05D003187 ORTHO05D003630 1.1e-16 90.5 61 67.2
Sopen07g002610 Solanum pennellii HOM05D003187 ORTHO05D003630 1.1e-16 90.5 61 67.2
PGSC0003DMG400027451 Solanum tuberosum HOM05D003187 ORTHO05D003630 1.1e-16 90.5 61 67.2
Ca_05654_v3 Cicer arietinum L. HOM05D003187 ORTHO05D003630 1.4e-16 90.1 76 55.3
Medtr7g092860 Medicago truncatula HOM05D003187 ORTHO05D003630 1.4e-16 90.1 76 57.9
Nitab4.5_0000244g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 1.4e-16 90.1 61 65.6
Nitab4.5_0009672g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 1.4e-16 90.1 61 65.6
Peaxi162Scf00457g00110 Petunia axillaris HOM05D003187 ORTHO05D003630 1.4e-16 90.1 61 67.2
CDE12G0549 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 1.8e-16 89.7 61 68.9
Cc06_g17320 Coffea canephora HOM05D003187 ORTHO05D003630 1.8e-16 89.7 61 70.5
Migut.F00885 Erythranthe guttata HOM05D003187 ORTHO05D003630 1.8e-16 89.7 61 67.2
Oeu027845.1 Olea europaea HOM05D003187 ORTHO05D003630 1.8e-16 89.7 61 67.2
Peaxi162Scf00297g01023 Petunia axillaris HOM05D003187 ORTHO05D003630 1.8e-16 89.7 61 65.6
TPR.G8049 Trifolium pratense HOM05D003187 ORTHO05D003630 1.8e-16 89.7 61 68.9
GSVIVG01016375001 Vitis vinifera HOM05D003187 ORTHO05D003630 1.8e-16 89.7 61 68.9
COL.COLO4_25670 Corchorus olitorius HOM05D003187 ORTHO05D003630 2.3e-16 89.4 61 67.2
Nitab4.5_0008689g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 2.3e-16 89.4 61 65.6
Sabra10G0148900 Salix brachista HOM05D003187 ORTHO05D003630 2.3e-16 89.4 61 68.9
Thecc.10G027100 Theobroma cacao HOM05D003187 ORTHO05D003630 2.3e-16 89.4 61 68.9
CAN.G1271.8 Capsicum annuum HOM05D003187 ORTHO05D003630 3.1e-16 89.0 61 67.2
HanXRQChr11g0322721 Helianthus annuus HOM05D003187 ORTHO05D003630 4.0e-16 88.6 76 53.9
Ciclev10031157m.g Citrus clementina HOM05D003187 ORTHO05D003630 5.2e-16 88.2 61 63.9
FAN04G2380 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.2e-16 88.2 61 67.2
FAN08G2825 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.2e-16 88.2 61 67.2
MD04G1043400 Malus domestica HOM05D003187 ORTHO05D003630 5.2e-16 88.2 93 48.4
Manes.10G018200 Manihot esculenta HOM05D003187 ORTHO05D003630 5.2e-16 88.2 61 67.2
Prupe.1G197600 Prunus persica HOM05D003187 ORTHO05D003630 5.2e-16 88.2 61 68.9
RcHm_v2.0_Chr7g0194071 Rosa chinensis HOM05D003187 ORTHO05D003630 5.2e-16 88.2 61 67.2
CDE04G1847 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 6.8e-16 87.8 61 67.2
Dinv34429 Davidia involucrata HOM05D003187 ORTHO05D003630 6.8e-16 87.8 61 68.9
Hund05583 Selenicereus undatus HOM05D003187 ORTHO05D003630 6.8e-16 87.8 61 68.9
Actinidia13914 Actinidia chinensis HOM05D003187 ORTHO05D003630 8.9e-16 87.4 61 67.2
Actinidia25354 Actinidia chinensis HOM05D003187 ORTHO05D003630 8.9e-16 87.4 61 67.2
arahy.Tifrunner.gnm1.ann1.0XII0R Arachis hypogaea HOM05D003187 ORTHO05D003630 8.9e-16 87.4 61 67.2
arahy.Tifrunner.gnm1.ann1.K3QQ9E Arachis hypogaea HOM05D003187 ORTHO05D003630 8.9e-16 87.4 61 67.2
arahy.Tifrunner.gnm1.ann1.P69V6G Arachis hypogaea HOM05D003187 ORTHO05D003630 8.9e-16 87.4 61 67.2
Duzib114G0739 Durio zibethinus HOM05D003187 ORTHO05D003630 8.9e-16 87.4 61 67.2
Manes.07G124700 Manihot esculenta HOM05D003187 ORTHO05D003630 8.9e-16 87.4 61 67.2
Psat6g127920 Pisum sativum HOM05D003187 ORTHO05D003630 8.9e-16 87.4 61 67.2
vmacro10066 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 8.9e-16 87.4 61 65.6
arahy.Tifrunner.gnm1.ann1.GJ5BI6 Arachis hypogaea HOM05D003187 ORTHO05D003630 1.2e-15 87.0 61 67.2
Cpa.g.sc19.222 Carica papaya HOM05D003187 ORTHO05D003630 1.2e-15 87.0 61 63.9
Gohir.A05G346100 Gossypium hirsutum HOM05D003187 ORTHO05D003630 1.2e-15 87.0 61 65.6
Nitab4.5_0012646g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 1.2e-15 87.0 61 63.9
Potri.010G193400 Populus trichocarpa HOM05D003187 ORTHO05D003630 1.2e-15 87.0 61 65.6
unitig_27.g25097 Utricularia gibba HOM05D003187 ORTHO05D003630 1.2e-15 87.0 77 54.5
CiPaw.06G148700 Carya illinoinensis HOM05D003187 ORTHO05D003630 1.5e-15 86.7 61 62.3
Haze_17177 Corylus avellana HOM05D003187 ORTHO05D003630 1.5e-15 86.7 61 63.9
FAN13G0040 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.5e-15 86.7 61 65.6
FAN18G0443 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.5e-15 86.7 61 65.6
FAN18G2229 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.5e-15 86.7 61 65.6
Glyma.02G254000 Glycine max HOM05D003187 ORTHO05D003630 1.5e-15 86.7 76 52.6
LjContig00357g0016423 Lotus japonicus HOM05D003187 ORTHO05D003630 1.5e-15 86.7 61 65.6
MD04G1043000 Malus domestica HOM05D003187 ORTHO05D003630 1.5e-15 86.7 61 65.6
Nn2g12076 Nelumbo nucifera HOM05D003187 ORTHO05D003630 1.5e-15 86.7 61 67.2
Prupe.7G059800 Prunus persica HOM05D003187 ORTHO05D003630 1.5e-15 86.7 61 67.2
CBR_g16842 Chara braunii HOM05D003187 ORTHO05D003630 2.0e-15 86.3 61 63.9
Cre13.g565321 Chlamydomonas reinhardtii HOM05D003187 ORTHO05D003630 2.0e-15 86.3 61 60.7
Cre13.g565450 Chlamydomonas reinhardtii HOM05D003187 ORTHO05D003630 2.0e-15 86.3 61 60.7
FvH4_5g04980 Fragaria vesca HOM05D003187 ORTHO05D003630 2.0e-15 86.3 61 63.9
HanXRQChr14g0459901 Helianthus annuus HOM05D003187 ORTHO05D003630 2.0e-15 86.3 61 63.9
Lsat_1_v5_gn_2_122660 Lactuca sativa HOM05D003187 ORTHO05D003630 2.0e-15 86.3 76 52.6
Lsat_1_v5_gn_7_58981 Lactuca sativa HOM05D003187 ORTHO05D003630 2.0e-15 86.3 76 52.6
Hund18445 Selenicereus undatus HOM05D003187 ORTHO05D003630 2.0e-15 86.3 61 65.6
AUR62016534 Chenopodium quinoa HOM05D003187 ORTHO05D003630 2.6e-15 85.9 61 65.6
FAN03G0133 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.6e-15 85.9 61 65.6
Nn2g11365 Nelumbo nucifera HOM05D003187 ORTHO05D003630 2.6e-15 85.9 61 65.6
SalBow1G1358 Salvia bowleyana HOM05D003187 ORTHO05D003630 2.6e-15 85.9 61 62.3
TWI53G1626 Tripterygium wilfordii HOM05D003187 ORTHO05D003630 2.6e-15 85.9 61 65.6
vmacro14468 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 2.6e-15 85.9 61 63.9
ECA232G0632 Erigeron canadensis HOM05D003187 ORTHO05D003630 3.4e-15 85.5 76 52.6
ECA238G3690 Erigeron canadensis HOM05D003187 ORTHO05D003630 3.4e-15 85.5 76 52.6
FAN06G4812 Fragaria x ananassa HOM05D003187 ORTHO05D003630 3.4e-15 85.5 70 57.1
Glyma.14G062500 Glycine max HOM05D003187 ORTHO05D003630 3.4e-15 85.5 76 52.6
Lalb_Chr10g0104991 Lupinus albus HOM05D003187 ORTHO05D003630 3.4e-15 85.5 61 63.9
Pp3c9_17690 Physcomitrium patens HOM05D003187 ORTHO05D003630 3.4e-15 85.5 69 56.5
PGR042G2760 Punica granatum HOM05D003187 ORTHO05D003630 3.4e-15 85.5 61 63.9
QL08p062568 Quercus lobata HOM05D003187 ORTHO05D003630 3.4e-15 85.5 61 62.3
Sc17g0002050 Simmondsia chinensis HOM05D003187 ORTHO05D003630 3.4e-15 85.5 61 65.6
THA.LOC104806141 Tarenaya hassleriana HOM05D003187 ORTHO05D003630 3.4e-15 85.5 61 65.6
Atru.chr12.251 Acer truncatum HOM05D003187 ORTHO05D003630 4.4e-15 85.1 61 62.3
Ah.08g214730 Amaranthus hybridus HOM05D003187 ORTHO05D003630 4.4e-15 85.1 61 63.9
EL10Ac7g17924 Beta vulgaris HOM05D003187 ORTHO05D003630 4.4e-15 85.1 61 65.6
CiPaw.05G043000 Carya illinoinensis HOM05D003187 ORTHO05D003630 4.4e-15 85.1 61 62.3
Aqoxy6G01396 Aquilegia oxysepala HOM05D003187 ORTHO05D003630 5.8e-15 84.7 61 70.5
CSS0009728 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 5.8e-15 84.7 61 63.9
CSS0010540 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 5.8e-15 84.7 61 63.9
ClCG07G003910 Citrullus lanatus HOM05D003187 ORTHO05D003630 5.8e-15 84.7 76 52.6
Eucgr.G03026 Eucalyptus grandis HOM05D003187 ORTHO05D003630 5.8e-15 84.7 61 65.6
FvH4_7g08523 Fragaria vesca HOM05D003187 ORTHO05D003630 5.8e-15 84.7 61 65.6
FAN10G0795 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.8e-15 84.7 61 65.6
Aa31LG6G1160 Aethionema arabicum HOM05D003187 ORTHO05D003630 7.6e-15 84.3 61 63.9
CANSAT80G0456 Cannabis sativa HOM05D003187 ORTHO05D003630 7.6e-15 84.3 61 63.9
CANSAT80G1383 Cannabis sativa HOM05D003187 ORTHO05D003630 7.6e-15 84.3 61 63.9
FAN10G2756 Fragaria x ananassa HOM05D003187 ORTHO05D003630 7.6e-15 84.3 61 63.9
Lj8A73G45 Lonicera japonica HOM05D003187 ORTHO05D003630 7.6e-15 84.3 61 63.9
Phvul.008G226900 Phaseolus vulgaris HOM05D003187 ORTHO05D003630 7.6e-15 84.3 76 50.0
A01p10400 Brassica napus HOM05D003187 ORTHO05D003630 9.9e-15 84.0 61 63.9
BraA01t00987Z Brassica rapa HOM05D003187 ORTHO05D003630 9.9e-15 84.0 61 63.9
AUR62001143 Chenopodium quinoa HOM05D003187 ORTHO05D003630 9.9e-15 84.0 61 63.9
Gohir.D04G066500 Gossypium hirsutum HOM05D003187 ORTHO05D003630 9.9e-15 84.0 61 63.9
Gorai.012G075300 Gossypium raimondii HOM05D003187 ORTHO05D003630 9.9e-15 84.0 61 63.9
Sp7g15590 Schrenkiella parvula HOM05D003187 ORTHO05D003630 9.9e-15 84.0 61 63.9
VMungo0647G1330 Vigna mungo HOM05D003187 ORTHO05D003630 9.9e-15 84.0 61 60.7
AL3G37850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 1.3e-14 83.6 61 63.9
CARHR225270 Cardamine hirsuta HOM05D003187 ORTHO05D003630 1.3e-14 83.6 61 63.9
MELO3C025148.2 Cucumis melo HOM05D003187 ORTHO05D003630 1.3e-14 83.6 76 51.3
Thhalv10025077m.g Eutrema salsugineum HOM05D003187 ORTHO05D003630 1.3e-14 83.6 61 63.9
HanXRQChr07g0202751 Helianthus annuus HOM05D003187 ORTHO05D003630 1.3e-14 83.6 76 51.3
Mapoly0031s0040 Marchantia polymorpha HOM05D003187 ORTHO05D003630 1.3e-14 83.6 76 52.6
Rhsim09G0171800 Rhododendron simsii HOM05D003187 ORTHO05D003630 1.3e-14 83.6 61 62.3
BcaNung02707 Brassica carinata HOM05D003187 ORTHO05D003630 1.7e-14 83.2 61 63.9
C07p49720 Brassica napus HOM05D003187 ORTHO05D003630 1.7e-14 83.2 61 63.9
BolC7t45473H Brassica oleracea HOM05D003187 ORTHO05D003630 1.7e-14 83.2 61 63.9
Nitab4.5_0004610g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 2.2e-14 82.8 61 60.7
AagrBONN_evm.TU.Sc2ySwM_228.636 Anthoceros agrestis HOM05D003187 ORTHO05D003630 2.9e-14 82.4 54 66.7
AL7G35850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 2.9e-14 82.4 61 62.3
BcaC06g30583 Brassica carinata HOM05D003187 ORTHO05D003630 2.9e-14 82.4 61 62.3
Sed0019761 Sechium edule HOM05D003187 ORTHO05D003630 2.9e-14 82.4 76 51.3
PRCOL_00002332 Prasinoderma coloniale HOM05D003187 ORTHO05D003630 3.7e-14 82.0 70 54.3
BcaC01g00541 Brassica carinata HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
BcaC09g51513 Brassica carinata HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
A03p51310 Brassica napus HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
A08p13810 Brassica napus HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
C01p12350 Brassica napus HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
C03p81220 Brassica napus HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
BolC1t01210H Brassica oleracea HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
BolC3t20388H Brassica oleracea HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
BraA08t33360Z Brassica rapa HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
Carub.0007s2280 Capsella rubella HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
DCAR_011784 Daucus carota HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 62.3
PSO384G1733 Papaver somniferum HOM05D003187 ORTHO05D003630 4.9e-14 81.6 61 63.9
AT1G36280 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 8.4e-14 80.9 61 62.3
BraA03t14212Z Brassica rapa HOM05D003187 ORTHO05D003630 8.4e-14 80.9 61 62.3
CsaV3_5G008870 Cucumis sativus L. HOM05D003187 ORTHO05D003630 8.4e-14 80.9 71 52.1
CSS0022977 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 1.1e-13 80.5 61 60.7
CSS0044344 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 1.1e-13 80.5 61 60.7
AT4G18440 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 1.9e-13 79.7 61 60.7
PSO339G2876 Papaver somniferum HOM05D003187 ORTHO05D003630 1.9e-13 79.7 61 63.9
HPP92_018291 Vanilla planifolia HOM05D003187 ORTHO05D003630 3.2e-13 79.0 61 65.6
MCO12G170 Micromonas commoda HOM05D003187 ORTHO05D003630 5.4e-13 78.2 61 59.0
SMO356G0706 Selaginella moellendorffii HOM05D003187 ORTHO05D003630 2.7e-12 75.9 78 47.4
Nitab4.5_0007356g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 4.6e-12 75.1 61 55.7
Os03g0313600 Oryza sativa ssp. japonica HOM05D003187 ORTHO05D003630 2.3e-11 72.8 61 59.0
SGA_v2.0_scaffold62G21340 Striga asiatica HOM05D003187 ORTHO05D003630 5.1e-11 71.6 52 61.5
Zm00001eb015040 Zea mays HOM05D003187 ORTHO05D003630 5.1e-11 71.6 61 55.7
Hma1.2p1_0710F.1_g207370 Hydrangea macrophylla HOM05D003187 ORTHO05D003630 1.9e-10 69.7 61 54.1
SHI03522 Sapria himalayana HOM05D003187 ORTHO05D003630 5.6e-10 68.2 54 59.3
SEGI_00377 Sequoiadendron giganteum HOM05D009727 ORTHO05D386665 1.2e-09 67.0 52 73.1
SEGI_16105 Sequoiadendron giganteum HOM05D030194 ORTHO05D014823 8.1e-09 64.3 51 70.6
Medtr5g081750 Medicago truncatula HOM05D003187 ORTHO05D003630 1.1e-08 63.9 69 49.3
FvH4_5g11350 Fragaria vesca HOM05D003187 ORTHO05D003630 3.1e-08 62.4 62 50.0
FAN08G1218 Fragaria x ananassa HOM05D003187 ORTHO05D003630 3.1e-08 62.4 62 50.0
FAN18G2583 Fragaria x ananassa HOM05D003187 ORTHO05D003630 3.1e-08 62.4 62 50.0
RcHm_v2.0_Chr7g0186531 Rosa chinensis HOM05D003187 ORTHO05D003630 3.1e-08 62.4 61 50.8
FAN18G3798 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.0e-07 59.7 55 50.9
SEGI_24902 Sequoiadendron giganteum HOM05D000001 ORTHO05D000501 5.8e-07 58.2 35 82.9
Cc00_g04440 Coffea canephora HOM05D003187 ORTHO05D003630 4.9e-06 55.1 31 80.6


User provided reference genes

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