Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 8.0e-64 246.9 122 100.0
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.4e-44 181.0 119 71.4
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 9.2e-44 180.3 121 70.2
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 9.2e-44 180.3 122 70.5
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 1.6e-43 179.5 117 73.5
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 2.1e-43 179.1 117 72.6
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 2.7e-43 178.7 120 70.0
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 6.0e-43 177.6 116 71.6
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 1.7e-42 176.0 117 73.5
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 1.7e-42 176.0 117 71.8
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 1.7e-42 176.0 120 67.5
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 2.3e-42 175.6 117 70.9
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 2.3e-42 175.6 119 70.6
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 3.0e-42 175.3 116 71.6
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 3.0e-42 175.3 116 71.6
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 3.0e-42 175.3 116 71.6
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 5.1e-42 174.5 119 71.4
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 5.1e-42 174.5 117 72.6
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 6.6e-42 174.1 119 68.1
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 6.6e-42 174.1 118 70.3
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 8.6e-42 173.7 116 70.7
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 1.5e-41 172.9 117 69.2
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 2.5e-41 172.2 117 70.1
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 2.5e-41 172.2 117 70.1
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 3.3e-41 171.8 117 70.1
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 4.3e-41 171.4 117 69.2
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 5.6e-41 171.0 118 69.5
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 5.6e-41 171.0 118 69.5
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 7.3e-41 170.6 117 70.1
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 7.3e-41 170.6 117 70.9
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 7.3e-41 170.6 117 68.4
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 9.5e-41 170.2 117 69.2
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 9.5e-41 170.2 117 69.2
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 9.5e-41 170.2 117 69.2
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 9.5e-41 170.2 118 69.5
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 9.5e-41 170.2 117 70.1
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 1.2e-40 169.9 119 67.2
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 1.2e-40 169.9 118 67.8
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 1.2e-40 169.9 119 68.9
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 1.6e-40 169.5 117 68.4
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 2.1e-40 169.1 118 66.1
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 2.1e-40 169.1 110 72.7
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 2.8e-40 168.7 118 68.6
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 2.8e-40 168.7 120 65.8
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 2.8e-40 168.7 117 70.1
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 2.8e-40 168.7 119 68.1
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 2.8e-40 168.7 117 68.4
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 3.6e-40 168.3 118 66.9
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 3.6e-40 168.3 118 66.9
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 3.6e-40 168.3 117 69.2
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 3.6e-40 168.3 119 66.4
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 3.6e-40 168.3 116 69.8
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 4.7e-40 167.9 118 66.9
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 4.7e-40 167.9 118 66.9
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 4.7e-40 167.9 117 67.5
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 4.7e-40 167.9 117 67.5
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 6.2e-40 167.5 118 66.9
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 6.2e-40 167.5 118 66.9
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 6.2e-40 167.5 118 66.9
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 6.2e-40 167.5 117 68.4
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 1.1e-39 166.8 117 68.4
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.1e-39 166.8 117 66.7
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 3.1e-39 165.2 118 66.1
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 3.1e-39 165.2 117 68.4
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 5.2e-39 164.5 110 69.1
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 6.8e-39 164.1 117 67.5
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 6.8e-39 164.1 117 69.2
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 8.9e-39 163.7 121 64.5
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 1.2e-38 163.3 118 65.3
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 1.2e-38 163.3 117 65.8
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 1.2e-38 163.3 120 65.0
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 1.5e-38 162.9 118 64.4
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 1.5e-38 162.9 118 64.4
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 1.5e-38 162.9 118 64.4
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 1.5e-38 162.9 118 64.4
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 1.5e-38 162.9 117 65.8
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 1.5e-38 162.9 117 64.1
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 1.5e-38 162.9 117 66.7
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 2.0e-38 162.5 118 66.9
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 3.4e-38 161.8 120 64.2
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 3.4e-38 161.8 119 64.7
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 3.4e-38 161.8 116 67.2
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 3.4e-38 161.8 122 62.3
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 4.4e-38 161.4 118 63.6
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 5.8e-38 161.0 110 70.0
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.8e-38 161.0 117 69.2
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.8e-38 161.0 117 69.2
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 7.6e-38 160.6 117 69.2
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 7.6e-38 160.6 117 65.0
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 9.9e-38 160.2 118 64.4
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 1.3e-37 159.8 118 63.6
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.3e-37 159.8 116 66.4
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 1.3e-37 159.8 114 66.7
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 2.2e-37 159.1 110 69.1
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 2.2e-37 159.1 117 67.5
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 2.9e-37 158.7 120 64.2
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 3.7e-37 158.3 119 63.9
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 4.9e-37 157.9 117 64.1
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 8.3e-37 157.1 117 62.4
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 8.3e-37 157.1 116 65.5
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 1.4e-36 156.4 117 66.7
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 1.4e-36 156.4 120 61.7
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 1.9e-36 156.0 120 60.8
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 7.1e-36 154.1 117 63.2
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 7.1e-36 154.1 116 62.9
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 1.2e-35 153.3 120 59.2
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 4.6e-35 151.4 120 60.8
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 7.8e-35 150.6 117 61.5
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 3.0e-34 148.7 112 61.6
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 4.3e-33 144.8 117 62.4
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 5.6e-33 144.4 102 66.7
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 2.8e-32 142.1 83 79.5
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 4.7e-32 141.4 104 65.4
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 6.4e-29 131.0 104 60.6
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.9e-20 102.8 119 50.4
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 4.2e-20 101.7 97 51.5
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 8.7e-18 94.0 53 77.4
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 3.3e-17 92.0 92 52.2
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 9.6e-17 90.5 67 62.7
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 5.3e-15 84.7 54 68.5
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.1e-12 77.0 39 87.2
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.4e-12 76.6 92 46.7
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 3.7e-08 62.0 56 55.4
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 1.0e-05 53.9 52 50.0


User provided reference genes

Program Settings