Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17861 Sequoiadendron giganteum HOM05D006825 ORTHO05D008510 3.3e-92 341.7 168 100.0
MBI02_g07022_MAGBIO Magnolia biondii HOM05D006825 ORTHO05D008510 1.1e-60 236.9 160 71.9
ATR1098G103 Amborella trichopoda HOM05D006825 ORTHO05D008510 2.8e-59 232.3 161 69.6
Cfa006985 Carpinus fangiana HOM05D000348 ORTHO05D000244 3.7e-59 231.9 167 65.9
QL06p050789 Quercus lobata HOM05D006825 ORTHO05D008510 6.3e-59 231.1 167 67.1
Aqoxy2G04041 Aquilegia oxysepala HOM05D006825 ORTHO05D008510 1.1e-58 230.3 170 67.6
PSO541G4668 Papaver somniferum HOM05D006825 ORTHO05D008510 1.8e-58 229.6 168 66.1
Glyma.02G047100 Glycine max HOM05D006825 ORTHO05D008510 2.4e-58 229.2 167 64.7
Zm00001eb417020 Zea mays HOM05D006825 ORTHO05D008510 2.4e-58 229.2 160 68.8
arahy.Tifrunner.gnm1.ann1.JPTZ14 Arachis hypogaea HOM05D006825 ORTHO05D008510 3.1e-58 228.8 167 65.9
Lsat_1_v5_gn_4_145960 Lactuca sativa HOM05D006825 ORTHO05D008510 3.1e-58 228.8 159 67.3
Hund14052 Selenicereus undatus HOM05D006825 ORTHO05D008510 3.1e-58 228.8 159 66.7
PSO675G9026 Papaver somniferum HOM05D006825 ORTHO05D008510 5.3e-58 228.0 168 65.5
MD15G1244000 Malus domestica HOM05D006825 ORTHO05D008510 6.9e-58 227.6 168 64.3
Haze_03748 Corylus avellana HOM05D006825 ORTHO05D008510 9.0e-58 227.3 167 64.7
CsaV3_6G047250 Cucumis sativus L. HOM05D006825 ORTHO05D008510 9.0e-58 227.3 167 67.1
DCAR_021509 Daucus carota HOM05D006825 ORTHO05D008510 1.5e-57 226.5 157 66.2
RcHm_v2.0_Chr2g0099251 Rosa chinensis HOM05D006825 ORTHO05D008510 1.5e-57 226.5 167 64.1
Thecc.01G016500 Theobroma cacao HOM05D006825 ORTHO05D008510 2.0e-57 226.1 159 66.7
VMungo0251G0870 Vigna mungo HOM05D006825 ORTHO05D008510 2.6e-57 225.7 167 66.5
Os02g0320100 Oryza sativa ssp. japonica HOM05D006825 ORTHO05D008510 3.4e-57 225.3 158 69.0
Sed0006507 Sechium edule HOM05D000348 ORTHO05D000244 3.4e-57 225.3 167 67.1
CANSAT25G1468 Cannabis sativa HOM05D006825 ORTHO05D008510 4.5e-57 224.9 157 67.5
Lsat_1_v5_gn_4_145901 Lactuca sativa HOM05D006825 ORTHO05D008510 4.5e-57 224.9 159 66.0
Phvul.003G264100 Phaseolus vulgaris HOM05D006825 ORTHO05D008510 4.5e-57 224.9 167 65.3
unitig_744.g24494 Utricularia gibba HOM05D000120 ORTHO05D008510 4.5e-57 224.9 169 63.9
MD02G1129700 Malus domestica HOM05D006825 ORTHO05D008510 5.9e-57 224.6 166 64.5
Manes.01G148100 Manihot esculenta HOM05D006825 ORTHO05D008510 5.9e-57 224.6 159 67.9
arahy.Tifrunner.gnm1.ann1.89Z5DT Arachis hypogaea HOM05D006825 ORTHO05D008510 7.7e-57 224.2 167 64.7
Lj4A220T100 Lonicera japonica HOM05D006825 ORTHO05D008510 7.7e-57 224.2 167 64.1
CSS0030622 Camellia sinensis var. sinensis HOM05D006825 ORTHO05D008510 1.0e-56 223.8 159 66.7
CSS0032071 Camellia sinensis var. sinensis HOM05D006825 ORTHO05D008510 1.0e-56 223.8 159 66.7
HanXRQChr09g0256941 Helianthus annuus HOM05D006825 ORTHO05D008510 1.0e-56 223.8 159 66.0
Nitab4.5_0004340g0050 Nicotiana tabacum HOM05D006825 ORTHO05D008510 1.0e-56 223.8 168 64.3
TAR626G0952 Trochodendron aralioides HOM05D006825 ORTHO05D008510 1.3e-56 223.4 159 67.3
Nn3g20374 Nelumbo nucifera HOM05D006825 ORTHO05D008510 1.7e-56 223.0 159 67.9
GSVIVG01018762001 Vitis vinifera HOM05D006825 ORTHO05D008510 1.7e-56 223.0 169 65.1
Duzib147G0784 Durio zibethinus HOM05D006825 ORTHO05D008510 2.2e-56 222.6 159 66.0
Gohir.A02G171400 Gossypium hirsutum HOM05D006825 ORTHO05D008510 2.2e-56 222.6 162 66.0
Lj4g0003754 Lotus japonicus HOM05D006825 ORTHO05D008510 2.2e-56 222.6 157 65.0
THA.LOC104821331 Tarenaya hassleriana HOM05D006825 ORTHO05D008510 2.9e-56 222.2 159 66.7
FvH4_1g11660 Fragaria vesca HOM05D006825 ORTHO05D008510 3.8e-56 221.9 158 66.5
FAN19G1602 Fragaria x ananassa HOM05D006825 ORTHO05D008510 3.8e-56 221.9 158 66.5
Prupe.7G169900 Prunus persica HOM05D006825 ORTHO05D008510 3.8e-56 221.9 167 64.1
CiPaw.08G130700 Carya illinoinensis HOM05D006825 ORTHO05D008510 8.5e-56 220.7 167 65.3
Medtr8g075430 Medicago truncatula HOM05D006825 ORTHO05D008510 8.5e-56 220.7 158 65.8
Nitab4.5_0000438g0130 Nicotiana tabacum HOM05D006825 ORTHO05D008510 8.5e-56 220.7 157 65.6
TPR.G8413 Trifolium pratense HOM05D006825 ORTHO05D008510 8.5e-56 220.7 158 67.1
MELO3C007916.2 Cucumis melo HOM05D006825 ORTHO05D008510 1.4e-55 219.9 178 62.9
Sabra07G0048700 Salix brachista HOM05D006825 ORTHO05D008510 1.4e-55 219.9 159 66.0
Gohir.D03G008700 Gossypium hirsutum HOM05D006825 ORTHO05D008510 1.9e-55 219.5 167 65.3
Gorai.003G008900 Gossypium raimondii HOM05D006825 ORTHO05D008510 1.9e-55 219.5 167 65.3
Potri.007G056800 Populus trichocarpa HOM05D006825 ORTHO05D008510 1.9e-55 219.5 159 64.8
CAN.G1817.4 Capsicum annuum HOM05D006825 ORTHO05D008510 2.5e-55 219.2 168 63.1
AUR62029480 Chenopodium quinoa HOM05D006825 ORTHO05D008510 3.2e-55 218.8 157 64.3
FAN28G2055 Fragaria x ananassa HOM05D006825 ORTHO05D008510 4.2e-55 218.4 158 65.8
FAN26G0347 Fragaria x ananassa HOM05D006825 ORTHO05D008510 5.5e-55 218.0 158 65.2
HPP92_013273 Vanilla planifolia HOM05D006825 ORTHO05D008510 5.5e-55 218.0 166 63.9
Ciclev10025798m.g Citrus clementina HOM05D006825 ORTHO05D008510 7.2e-55 217.6 159 64.2
Sp2g30510 Schrenkiella parvula HOM05D006825 ORTHO05D008510 7.2e-55 217.6 167 64.7
MSTRG.14307 Avicennia marina HOM05D006825 ORTHO05D008510 1.2e-54 216.9 160 65.0
vmacro22141 Vaccinium macrocarpon HOM05D006825 ORTHO05D008510 1.2e-54 216.9 167 61.7
Rhsim10G0211100 Rhododendron simsii HOM05D006825 ORTHO05D008510 2.1e-54 216.1 167 62.3
PGSC0003DMG400022529 Solanum tuberosum HOM05D006825 ORTHO05D008510 2.1e-54 216.1 160 63.8
EL10Ac6g15487 Beta vulgaris HOM05D006825 ORTHO05D008510 2.7e-54 215.7 161 61.5
Dinv33645 Davidia involucrata HOM05D006825 ORTHO05D008510 2.7e-54 215.7 167 62.9
Migut.H02145 Erythranthe guttata HOM05D006825 ORTHO05D008510 2.7e-54 215.7 161 64.0
AUR62003356 Chenopodium quinoa HOM05D006825 ORTHO05D008510 3.6e-54 215.3 157 63.1
Ca_22387_v3 Cicer arietinum L. HOM05D006825 ORTHO05D008510 3.6e-54 215.3 157 65.0
CDE01G0266 Ceratophyllum demersum HOM05D006825 ORTHO05D008510 6.1e-54 214.5 167 63.5
Sc03g0003620 Simmondsia chinensis HOM05D006825 ORTHO05D008510 6.1e-54 214.5 159 62.9
Cpa.g.sc6.269 Carica papaya HOM05D006825 ORTHO05D008510 7.9e-54 214.2 159 66.0
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 1.0e-53 213.8 190 58.9
Peaxi162Scf00635g00623 Petunia axillaris HOM05D006825 ORTHO05D008510 1.0e-53 213.8 160 63.8
Lalb_Chr05g0229811 Lupinus albus HOM05D006825 ORTHO05D008510 1.4e-53 213.4 161 62.1
Cc07_g10910 Coffea canephora HOM05D006825 ORTHO05D008510 1.8e-53 213.0 159 64.2
Solyc03g033450.4 Solanum lycopersicum HOM05D006825 ORTHO05D008510 2.3e-53 212.6 168 60.7
BcaC03g18427 Brassica carinata HOM05D006825 ORTHO05D008510 3.0e-53 212.2 159 63.5
BolC2t12557H Brassica oleracea HOM05D006825 ORTHO05D008510 3.0e-53 212.2 159 63.5
Oeu053236.1 Olea europaea HOM05D006825 ORTHO05D008510 3.9e-53 211.8 159 62.9
Thhalv10004380m.g Eutrema salsugineum HOM05D006825 ORTHO05D008510 5.1e-53 211.5 159 64.8
Aa31LG1G14680 Aethionema arabicum HOM05D006825 ORTHO05D008510 8.8e-53 210.7 167 62.9
Eucgr.I02337 Eucalyptus grandis HOM05D006825 ORTHO05D008510 1.5e-52 209.9 160 62.5
A02p44590 Brassica napus HOM05D006825 ORTHO05D008510 2.0e-52 209.5 159 62.9
BraA02t09375Z Brassica rapa HOM05D006825 ORTHO05D008510 2.0e-52 209.5 159 62.9
Carub.0008s2832 Capsella rubella HOM05D006825 ORTHO05D008510 2.0e-52 209.5 159 62.3
CARHR281560 Cardamine hirsuta HOM05D006825 ORTHO05D008510 2.5e-52 209.1 167 62.3
AT5G66180 Arabidopsis thaliana HOM05D006825 ORTHO05D008510 9.7e-52 207.2 159 62.9
AL8G45350 Arabidopsis lyrata HOM05D006825 ORTHO05D008510 2.8e-51 205.7 159 62.3
SGA_v2.0_scaffold80G25916 Striga asiatica HOM05D006825 ORTHO05D008510 2.4e-50 202.6 163 62.6
PGR119G0791 Punica granatum HOM05D006825 ORTHO05D008510 5.3e-50 201.4 159 58.5
Pp3c17_24030 Physcomitrium patens HOM05D006825 ORTHO05D008510 9.1e-50 200.7 157 62.4
TWI09G1238 Tripterygium wilfordii HOM05D006825 ORTHO05D008510 1.0e-48 197.2 173 56.6
SMO347G0256 Selaginella moellendorffii HOM05D006825 ORTHO05D008510 2.9e-48 195.7 160 60.0
Ah.03g148930 Amaranthus hybridus HOM05D006825 ORTHO05D008510 5.0e-48 194.9 157 59.2
SEGI_39386 Sequoiadendron giganteum HOM05D006825 ORTHO05D008510 2.7e-46 189.1 92 98.9
CBR_g38194 Chara braunii HOM05D006825 ORTHO05D008510 3.3e-44 182.2 167 55.1
SHI46760 Sapria himalayana HOM05D006825 ORTHO05D008510 4.4e-44 181.8 191 48.7
Actinidia17432 Actinidia chinensis HOM05D006825 ORTHO05D008510 2.8e-43 179.1 119 70.6
Mapoly0052s0057 Marchantia polymorpha HOM05D006825 ORTHO05D008510 1.0e-40 170.6 128 64.8
AagrBONN_evm.TU.Sc2ySwM_344.4862 Anthoceros agrestis HOM05D006825 ORTHO05D008510 5.0e-40 168.3 129 59.7
SalBow7G2494 Salvia bowleyana HOM05D006825 ORTHO05D008510 8.5e-40 167.5 120 65.0
FAN23G1707 Fragaria x ananassa HOM05D000348 ORTHO05D000244 8.0e-38 161.0 173 50.9
Psat4g100720 Pisum sativum HOM05D006825 ORTHO05D008510 4.8e-35 151.8 113 61.9
ECA232G1215 Erigeron canadensis HOM05D006825 ORTHO05D008510 2.0e-28 129.8 77 74.0
Sopen03g006200 Solanum pennellii HOM05D006825 ORTHO05D008510 2.0e-28 129.8 77 77.9
ECA232G4867 Erigeron canadensis HOM05D006825 ORTHO05D008510 9.8e-20 100.9 83 55.4
SEGI_38048 Sequoiadendron giganteum HOM05D006825 ORTHO05D008510 2.2e-19 99.8 52 92.3
Glyma.04G054300 Glycine max HOM05D004621 ORTHO05D005817 4.6e-09 65.5 115 33.9
SalBow4G1696 Salvia bowleyana HOM05D004621 ORTHO05D005817 4.6e-09 65.5 145 30.3
arahy.Tifrunner.gnm1.ann1.I8I12Q Arachis hypogaea HOM05D004621 ORTHO05D005817 5.9e-09 65.1 113 32.7
SGA_v2.0_scaffold20G09183 Striga asiatica HOM05D004621 ORTHO05D005817 7.8e-09 64.7 113 32.7
Gohir.D05G041600 Gossypium hirsutum HOM05D004621 ORTHO05D005817 1.0e-08 64.3 113 32.7
Gorai.009G042200 Gossypium raimondii HOM05D004621 ORTHO05D005817 1.0e-08 64.3 113 32.7
Glyma.06G054600 Glycine max HOM05D004621 ORTHO05D005817 1.3e-08 63.9 115 33.0
Hund19431 Selenicereus undatus HOM05D004621 ORTHO05D005817 1.3e-08 63.9 115 33.0
Gohir.A05G040100 Gossypium hirsutum HOM05D004621 ORTHO05D005817 1.7e-08 63.5 115 33.0
Lalb_Chr11g0063251 Lupinus albus HOM05D004621 ORTHO05D005817 1.7e-08 63.5 115 33.0
Thecc.09G059300 Theobroma cacao HOM05D004621 ORTHO05D005817 2.3e-08 63.2 115 33.0
Phvul.009G080100 Phaseolus vulgaris HOM05D004621 ORTHO05D005817 3.0e-08 62.8 115 33.0
unitig_88.g27672 Utricularia gibba HOM05D004621 ORTHO05D005817 3.0e-08 62.8 112 31.2
COL.COLO4_21108 Corchorus olitorius HOM05D004621 ORTHO05D005817 6.6e-08 61.6 113 31.9
Duzib168G0020 Durio zibethinus HOM05D004621 ORTHO05D005817 6.6e-08 61.6 115 33.0
Lj1g0023758 Lotus japonicus HOM05D004621 ORTHO05D005817 8.6e-08 61.2 115 31.3
Psat5g035360 Pisum sativum HOM05D004621 ORTHO05D005817 8.6e-08 61.2 115 32.2
TPR.G3533 Trifolium pratense HOM05D004621 ORTHO05D005817 1.5e-07 60.5 115 32.2
Cre50.g761447 Chlamydomonas reinhardtii HOM05D001724 ORTHO05D007284 2.5e-07 59.7 88 36.4
Cfa017997 Carpinus fangiana HOM05D004621 ORTHO05D005817 5.6e-07 58.5 113 31.0
CiPaw.16G067600 Carya illinoinensis HOM05D004621 ORTHO05D005817 5.6e-07 58.5 115 33.0
VMungo1309G3014 Vigna mungo HOM05D004621 ORTHO05D005817 5.6e-07 58.5 115 31.3
BcaB04g19746 Brassica carinata HOM05D004621 ORTHO05D005817 7.3e-07 58.2 113 31.0
Peaxi162Scf01253g00025 Petunia axillaris HOM05D004621 ORTHO05D005817 1.6e-06 57.0 113 30.1
Medtr3g104760 Medicago truncatula HOM05D004621 ORTHO05D005817 2.1e-06 56.6 115 31.3
Medtr8g075450 Medicago truncatula HOM05D006825 ORTHO05D048890 2.1e-06 56.6 40 62.5
Pp3c27_2290 Physcomitrium patens HOM05D001724 ORTHO05D007284 2.1e-06 56.6 106 29.2
Rhsim05G0135500 Rhododendron simsii HOM05D004621 ORTHO05D005817 2.1e-06 56.6 113 31.9
HanXRQChr10g0309801 Helianthus annuus HOM05D004621 ORTHO05D005817 3.6e-06 55.8 111 28.8
Solyc08g062560.4 Solanum lycopersicum HOM05D004621 ORTHO05D005817 3.6e-06 55.8 121 26.4
Sopen08g017990 Solanum pennellii HOM05D004621 ORTHO05D005817 3.6e-06 55.8 121 26.4
arahy.Tifrunner.gnm1.ann1.T7L0BR Arachis hypogaea HOM05D004621 ORTHO05D005817 4.7e-06 55.5 112 30.4
Lsat_1_v5_gn_5_78680 Lactuca sativa HOM05D004621 ORTHO05D005817 4.7e-06 55.5 113 29.2
Peaxi162Scf00006g00319 Petunia axillaris HOM05D001724 ORTHO05D007284 4.7e-06 55.5 100 30.0
Aqoxy4G02217 Aquilegia oxysepala HOM05D001724 ORTHO05D007284 6.2e-06 55.1 142 28.2
Os02g0217800 Oryza sativa ssp. japonica HOM05D004621 ORTHO05D005817 6.2e-06 55.1 122 27.9
CAN.G42.5 Capsicum annuum HOM05D004621 ORTHO05D005817 8.0e-06 54.7 121 25.6
Mapoly0080s0050 Marchantia polymorpha HOM05D001724 ORTHO05D007284 8.0e-06 54.7 99 32.3
PGSC0003DMG400008208 Solanum tuberosum HOM05D004621 ORTHO05D005817 8.0e-06 54.7 113 28.3


User provided reference genes

Program Settings