Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 3.8e-85 318.2 164 100.0
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.8e-58 229.6 118 97.5
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.3e-56 223.4 163 66.9
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 6.5e-53 211.1 163 62.6
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 1.5e-52 209.9 163 63.8
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.9e-52 209.5 163 63.8
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.9e-52 209.5 163 64.4
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 2.5e-52 209.1 159 62.9
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 7.2e-52 207.6 163 63.8
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 9.5e-52 207.2 164 62.8
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 1.2e-51 206.8 163 62.6
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.2e-51 206.8 159 62.9
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.6e-51 206.5 163 63.2
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.6e-51 206.5 163 64.4
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 2.1e-51 206.1 163 63.2
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 2.8e-51 205.7 163 62.6
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 4.7e-51 204.9 161 64.6
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 6.1e-51 204.5 163 62.0
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 8.0e-51 204.1 161 62.7
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 1.4e-50 203.4 161 63.4
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 1.4e-50 203.4 163 63.2
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 3.0e-50 202.2 163 61.3
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 4.0e-50 201.8 163 60.7
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 4.0e-50 201.8 163 62.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 5.2e-50 201.4 163 62.0
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 5.2e-50 201.4 163 60.7
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 5.2e-50 201.4 163 59.5
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 6.8e-50 201.1 163 61.3
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 6.8e-50 201.1 163 61.3
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 6.8e-50 201.1 152 65.8
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 8.9e-50 200.7 161 61.5
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 8.9e-50 200.7 163 62.0
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 8.9e-50 200.7 161 64.0
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.2e-49 200.3 165 60.0
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.5e-49 199.9 161 62.7
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 1.5e-49 199.9 163 61.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 2.0e-49 199.5 165 60.0
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 2.6e-49 199.1 157 63.1
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 4.4e-49 198.4 161 61.5
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 4.4e-49 198.4 163 59.5
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 4.4e-49 198.4 161 60.2
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 4.4e-49 198.4 161 62.7
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 9.8e-49 197.2 161 60.2
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 9.8e-49 197.2 166 60.2
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 2.2e-48 196.1 161 59.6
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 2.2e-48 196.1 163 60.1
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.2e-48 196.1 163 58.9
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 2.8e-48 195.7 165 58.8
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.8e-48 195.7 165 58.2
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 3.7e-48 195.3 163 60.1
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.7e-48 195.3 189 54.5
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 3.7e-48 195.3 164 57.9
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.9e-48 194.9 165 57.6
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 6.3e-48 194.5 161 60.9
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.1e-47 193.7 161 60.9
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 1.1e-47 193.7 165 58.2
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.1e-47 193.7 163 59.5
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.1e-47 193.7 163 59.5
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.1e-47 193.7 163 59.5
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.1e-47 193.7 163 59.5
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 1.1e-47 193.7 161 59.6
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.4e-47 193.4 161 61.5
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.4e-47 192.6 163 59.5
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 3.1e-47 192.2 165 58.8
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 3.1e-47 192.2 165 58.8
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 3.1e-47 192.2 163 57.7
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 3.1e-47 192.2 163 57.7
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 7.0e-47 191.0 163 58.9
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.2e-46 190.3 163 58.3
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 5.9e-46 188.0 163 57.7
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.0e-45 187.2 185 53.5
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-45 186.0 163 57.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-45 186.0 163 57.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-45 186.0 163 57.7
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 2.9e-45 185.7 165 56.4
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 2.9e-45 185.7 163 57.7
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 2.9e-45 185.7 164 56.1
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 6.6e-45 184.5 165 55.8
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 8.6e-45 184.1 148 62.2
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 8.6e-45 184.1 200 49.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 5.6e-44 181.4 154 59.7
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 7.3e-44 181.0 152 58.6
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 9.5e-44 180.6 161 56.5
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.6e-43 179.9 192 49.0
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 4.7e-43 178.3 163 53.4
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 6.1e-43 177.9 163 52.8
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 6.1e-43 177.9 163 52.8
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.4e-42 176.8 163 52.8
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 1.4e-42 176.8 163 52.8
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.8e-42 176.4 164 53.7
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.8e-42 176.4 163 54.0
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.0e-42 175.6 171 55.6
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 4.0e-42 175.3 136 64.0
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.2e-42 174.9 164 54.3
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 6.8e-42 174.5 164 55.5
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.2e-41 173.7 157 54.8
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.2e-41 173.7 161 52.8
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.5e-41 173.3 165 54.5
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.5e-41 173.3 187 49.7
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 3.4e-41 172.2 139 58.3
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.4e-41 171.8 164 52.4
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 5.8e-41 171.4 163 54.0
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.7e-40 169.9 137 56.9
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 3.7e-40 168.7 148 54.7
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.3e-40 167.5 164 53.0
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.8e-39 166.4 135 59.3
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 3.2e-39 165.6 138 60.1
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 9.2e-39 164.1 134 59.0
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 2.7e-38 162.5 135 57.0
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 3.5e-38 162.2 136 57.4
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.7e-37 159.8 123 61.0
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 3.9e-37 158.7 118 65.3
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.1e-36 157.1 163 47.9
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 5.6e-36 154.8 122 61.5
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 9.5e-36 154.1 162 52.5
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 2.1e-35 152.9 125 61.6
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 4.7e-35 151.8 116 62.9
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 6.2e-35 151.4 117 63.2
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 2.9e-32 142.5 163 46.0
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 1.1e-31 140.6 116 58.6
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 5.4e-31 138.3 115 59.1
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.2e-30 137.1 136 54.4
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 2.1e-30 136.3 143 51.7
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 6.0e-30 134.8 112 59.8
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.3e-29 132.9 161 47.8
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 7.3e-28 127.9 122 53.3
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 6.2e-27 124.8 119 53.8
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.4e-25 119.0 118 50.8
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 2.2e-24 116.3 87 58.6
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 5.4e-23 111.7 132 46.2
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 3.5e-22 109.0 126 50.8
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.3e-21 107.1 88 59.1
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.9e-20 103.2 99 53.5
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 5.6e-20 101.7 84 65.5
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 4.4e-17 92.0 71 59.2
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 4.4e-17 92.0 73 57.5
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 4.4e-17 92.0 73 57.5
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 4.4e-17 92.0 73 57.5
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.8e-17 91.7 161 37.9
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.9e-15 86.7 71 59.2
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.1e-15 84.7 97 49.5
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.6e-14 83.6 69 56.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.7e-14 82.8 163 34.4
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 5.2e-10 68.6 58 56.9
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 9.0e-10 67.8 75 50.7
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 2.0e-09 66.6 54 64.8
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 2.6e-09 66.2 69 50.7
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 4.4e-09 65.5 40 60.0
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 6.4e-08 61.6 161 31.1
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.6e-06 57.0 63 46.0


User provided reference genes

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