Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 9.8e-95 350.1 178 100.0
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.9e-66 256.1 170 73.5
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.3e-66 255.4 176 72.2
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 7.3e-66 254.2 176 71.6
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.1e-65 252.7 170 74.1
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 3.6e-65 251.9 170 73.5
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 1.1e-64 250.4 176 69.9
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.4e-64 250.0 176 69.9
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.8e-64 249.6 177 70.1
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.8e-64 249.6 176 70.5
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 1.8e-64 249.6 176 69.9
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.4e-64 249.2 176 69.3
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.4e-64 249.2 176 69.3
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 4.0e-64 248.4 170 71.8
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 5.2e-64 248.1 176 69.3
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.5e-63 246.5 176 69.3
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 2.0e-63 246.1 176 69.3
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.0e-63 246.1 177 68.4
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.0e-63 246.1 177 68.4
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 2.6e-63 245.7 176 67.6
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 2.6e-63 245.7 176 69.9
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 3.4e-63 245.4 177 68.9
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.4e-63 245.4 176 70.5
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 4.4e-63 245.0 178 68.0
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 5.8e-63 244.6 160 74.4
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 5.8e-63 244.6 175 69.1
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 7.6e-63 244.2 175 69.1
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 7.6e-63 244.2 180 69.4
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 9.9e-63 243.8 176 69.9
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 9.9e-63 243.8 178 69.7
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 9.9e-63 243.8 176 69.3
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 9.9e-63 243.8 170 71.2
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.3e-62 243.4 176 68.8
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.3e-62 243.4 176 67.6
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.3e-62 243.4 176 67.6
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.2e-62 242.7 169 71.6
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 2.2e-62 242.7 156 75.0
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.2e-62 242.7 176 69.3
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 2.9e-62 242.3 170 72.4
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.9e-62 242.3 178 68.5
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 2.9e-62 242.3 171 70.2
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 3.8e-62 241.9 157 73.2
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 4.9e-62 241.5 176 68.2
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.9e-62 241.5 176 68.8
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 4.9e-62 241.5 179 66.5
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 4.9e-62 241.5 176 68.8
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 4.9e-62 241.5 176 67.6
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 8.4e-62 240.7 176 67.6
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 8.4e-62 240.7 176 68.8
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 8.4e-62 240.7 176 68.8
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 8.4e-62 240.7 179 67.6
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.1e-61 240.4 176 69.9
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.1e-61 240.4 176 66.5
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.1e-61 240.4 157 72.6
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 1.4e-61 240.0 176 67.6
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.9e-61 239.6 177 66.1
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 2.4e-61 239.2 176 68.2
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 2.4e-61 239.2 177 67.2
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.4e-61 239.2 177 67.2
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 2.4e-61 239.2 173 69.9
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 3.2e-61 238.8 151 76.2
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 7.1e-61 237.7 157 72.0
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 7.1e-61 237.7 173 68.2
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 7.1e-61 237.7 176 66.5
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 7.1e-61 237.7 157 73.2
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.1e-61 237.7 176 67.0
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.2e-60 236.9 173 68.2
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.2e-60 236.9 167 70.1
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-60 236.5 173 69.9
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 2.1e-60 236.1 167 70.1
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.1e-60 236.1 157 72.6
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 2.7e-60 235.7 172 69.8
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 3.5e-60 235.3 176 67.6
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 3.5e-60 235.3 157 70.7
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 4.6e-60 235.0 199 62.3
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.6e-60 235.0 177 67.2
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.6e-60 235.0 170 68.8
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.6e-60 235.0 160 72.5
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.0e-59 233.8 156 71.8
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-59 233.4 161 70.8
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.7e-59 233.0 182 64.8
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.7e-59 233.0 181 64.6
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 2.3e-59 232.6 157 69.4
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 3.9e-59 231.9 157 72.0
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 3.9e-59 231.9 180 65.6
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 5.1e-59 231.5 156 71.2
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 6.6e-59 231.1 173 67.6
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 8.7e-59 230.7 157 71.3
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 8.7e-59 230.7 157 71.3
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 1.9e-58 229.6 157 71.3
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.9e-58 229.6 173 67.1
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 4.3e-58 228.4 186 62.9
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 5.6e-58 228.0 159 69.2
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.3e-57 226.9 143 75.5
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.6e-57 226.5 169 67.5
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 1.6e-57 226.5 157 70.7
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 2.8e-57 225.7 176 63.6
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 3.6e-57 225.3 157 68.8
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 4.8e-57 224.9 143 76.2
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 4.8e-57 224.9 176 62.5
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.4e-56 223.4 157 68.8
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 3.1e-56 222.2 138 76.8
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 3.1e-56 222.2 176 61.9
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 4.0e-56 221.9 156 70.5
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 6.9e-56 221.1 137 77.4
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.0e-55 219.5 173 64.2
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 7.6e-55 217.6 161 68.3
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.7e-54 216.5 137 77.4
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.7e-54 216.5 165 65.5
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.7e-54 216.5 137 75.2
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.2e-54 216.1 146 72.6
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 6.4e-54 214.5 143 72.0
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.4e-53 213.4 179 61.5
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 3.2e-53 212.2 144 70.8
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 7.9e-52 207.6 173 65.3
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 3.1e-48 195.7 167 54.5
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 5.8e-47 191.4 173 54.3
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.4e-45 186.8 130 71.5
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.1e-45 184.5 176 56.8
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.5e-44 182.2 158 60.1
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.1e-42 177.2 137 65.0
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.6e-41 173.3 109 77.1
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 1.1e-40 170.6 113 73.5
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 3.1e-40 169.1 115 72.2
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.2e-38 162.9 126 68.3
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 1.4e-37 160.2 141 58.9
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 7.1e-37 157.9 115 69.6
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.1e-36 156.4 152 50.0
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 2.5e-34 149.4 113 66.4
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.0e-30 137.5 100 68.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.9e-29 133.3 131 56.5
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.6e-28 128.6 75 76.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 6.1e-28 128.3 135 51.1
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.9e-27 125.6 116 58.6
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.5e-26 123.6 117 56.4
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 2.2e-25 119.8 91 64.8
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 2.2e-25 119.8 187 40.6
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.3e-25 118.2 75 69.3
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.9e-24 114.8 63 79.4
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.6e-23 112.8 75 69.3
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.5e-22 107.8 145 42.1
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 7.2e-21 104.8 83 66.3
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 5.7e-18 95.1 64 75.0
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-15 87.4 75 57.3
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 3.4e-15 85.9 115 45.2
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 7.7e-15 84.7 66 65.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 3.8e-14 82.4 50 78.0
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 7.2e-13 78.2 58 69.0
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 3.0e-11 72.8 58 56.9


User provided reference genes

Program Settings