Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 2124.0 1109 100.0
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1378.6 1111 62.9
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1371.3 1089 63.5
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1367.8 1069 63.5
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1366.3 1105 62.3
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1364.0 1069 63.2
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1363.6 1069 63.3
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1362.8 1075 63.2
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1357.8 1109 62.6
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1357.4 1118 61.1
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1357.0 1108 61.7
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1352.8 1079 62.8
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1352.0 1108 61.6
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1350.5 1076 62.5
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1349.3 1128 60.4
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1348.6 1124 60.2
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1348.2 1121 60.6
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1345.9 1115 61.5
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1344.3 1095 61.5
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1343.9 1093 62.1
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1341.3 1089 62.7
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1339.7 1079 60.6
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1339.3 1087 60.7
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1338.2 1089 62.7
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1336.2 1086 62.2
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1336.2 1087 60.5
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1334.7 1087 60.3
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1333.9 1122 60.2
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1332.4 1080 61.5
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1331.2 1087 60.3
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1330.1 1092 60.8
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1329.3 1120 59.6
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1324.7 1092 61.7
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1324.3 1120 59.9
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1322.4 1067 61.4
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1318.5 1072 61.4
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1318.5 1120 59.6
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1316.6 1076 61.8
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1315.1 1121 59.7
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1314.7 1117 59.8
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1314.3 1074 61.8
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1314.3 1169 57.7
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1311.2 1109 58.8
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1310.4 1122 60.2
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1310.0 1122 60.2
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1308.5 1092 60.1
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1308.1 1081 60.6
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1305.8 1076 61.0
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1305.0 1073 61.9
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1304.7 1127 59.4
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1303.9 1119 59.8
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1303.5 1121 60.0
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1300.0 1105 59.8
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1295.8 1086 61.5
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1294.6 1076 60.1
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1294.6 1120 59.4
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1293.1 1106 59.5
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1290.4 1028 64.4
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1290.4 1066 61.5
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1290.0 1114 58.9
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1288.5 1083 60.1
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1286.2 1098 60.0
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1285.8 1098 60.0
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1282.7 1105 59.3
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1280.8 1098 59.7
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1279.2 1075 59.5
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1279.2 1065 60.2
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1279.2 1108 58.4
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1278.5 1128 59.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1276.5 1108 58.9
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1276.2 1098 59.5
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1275.8 1109 58.2
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1272.7 1100 58.1
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1272.7 1116 57.6
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1271.5 1104 58.4
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1271.5 1106 58.3
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1268.8 1123 57.8
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1268.8 1110 58.1
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1268.8 1080 59.8
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1267.3 1121 58.2
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1266.5 1109 57.8
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1266.1 1098 58.6
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1266.1 1071 60.0
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1265.4 1071 59.9
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1263.1 1065 59.5
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1262.3 1070 59.6
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1261.5 1062 58.9
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 0.0e+00 1260.0 1102 57.5
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1256.9 1053 60.2
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1256.9 1072 59.5
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1256.9 1072 59.5
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1250.7 1065 58.9
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1249.6 1065 58.8
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1246.5 1115 58.0
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1246.1 1024 60.8
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1244.6 1008 62.3
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1223.8 1065 57.4
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1221.8 1065 58.2
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1208.7 1032 58.5
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1200.7 1000 61.8
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 0.0e+00 1165.6 1064 54.1
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1161.7 1122 54.9
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1149.8 1067 55.4
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1146.3 921 62.4
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1146.0 1073 55.4
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1140.6 922 62.4
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 0.0e+00 1104.7 1057 54.6
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1102.8 905 60.9
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 2.4e-308 1062.4 887 59.6
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.2e-291 1006.9 896 58.1
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 2.1e-275 953.0 806 59.7
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 4.6e-251 872.1 775 57.2
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.6e-243 847.0 1090 43.8
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 2.1e-243 846.7 760 56.2
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 2.7e-243 846.3 669 63.8
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 7.2e-212 741.9 894 47.7
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 7.2e-196 688.7 625 54.2
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 1.2e-193 681.4 595 58.8
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 2.9e-144 517.3 355 80.3
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.8e-133 481.5 368 60.6
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.9e-119 434.9 344 64.5
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 3.4e-113 414.1 407 54.3
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 3.3e-108 397.5 1218 29.3
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 1.8e-106 391.7 419 52.3
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 3.6e-102 377.5 1124 29.0
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.2e-69 267.3 322 49.4
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 6.8e-69 266.9 301 50.2
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.8e-68 263.8 298 50.0
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 7.5e-60 236.9 317 42.9
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 4.7e-46 191.0 334 38.9
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.1e-39 169.9 653 25.7
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 5.1e-24 117.9 102 54.9
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 2.8e-22 112.1 72 68.1
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.1e-21 110.2 68 69.1
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 5.3e-21 107.8 110 60.0
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 5.8e-20 104.4 85 61.2
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.2e-17 96.7 85 56.5
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 9.6e-15 87.0 108 45.4


User provided reference genes

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