Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.3e-198 694.9 363 100.0
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 8.9e-119 431.0 328 72.9
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.4e-118 429.1 278 81.7
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.3e-117 427.2 286 79.0
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 1.7e-117 426.8 313 73.8
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 2.2e-117 426.4 286 78.3
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 4.9e-117 425.2 287 78.0
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 6.4e-117 424.9 279 78.9
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 8.3e-117 424.5 278 80.9
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 1.4e-116 423.7 286 78.3
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.4e-116 423.7 286 76.6
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 2.4e-116 422.9 274 81.4
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 5.4e-116 421.8 274 79.6
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 5.4e-116 421.8 274 78.8
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 5.4e-116 421.8 277 79.8
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.2e-115 420.6 275 80.7
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.6e-115 420.2 278 78.4
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.6e-115 420.2 275 78.5
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 2.1e-115 419.9 274 79.2
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 2.7e-115 419.5 274 79.6
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 3.5e-115 419.1 274 79.2
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 3.5e-115 419.1 303 74.6
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 4.6e-115 418.7 315 72.1
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 6.0e-115 418.3 274 79.2
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 6.0e-115 418.3 300 73.3
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 6.0e-115 418.3 276 79.0
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 6.0e-115 418.3 285 77.5
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 6.0e-115 418.3 335 69.0
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 1.0e-114 417.5 292 75.7
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.3e-114 417.2 285 77.5
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.3e-114 417.2 275 77.8
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 1.3e-114 417.2 296 75.7
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 1.7e-114 416.8 280 79.3
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 1.7e-114 416.8 322 72.4
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 2.3e-114 416.4 289 75.4
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 2.3e-114 416.4 278 77.7
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 3.0e-114 416.0 333 68.5
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 3.0e-114 416.0 273 79.1
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 3.0e-114 416.0 288 75.7
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.9e-114 415.6 276 77.9
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 3.9e-114 415.6 282 77.7
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 3.9e-114 415.6 282 77.7
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 6.6e-114 414.8 277 78.0
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 6.6e-114 414.8 280 78.2
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 8.6e-114 414.5 274 78.8
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 8.6e-114 414.5 274 78.5
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 8.6e-114 414.5 347 68.3
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.6e-114 414.5 347 68.3
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.6e-114 414.5 347 68.3
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.1e-113 414.1 293 75.1
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 1.1e-113 414.1 288 75.7
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.1e-113 414.1 278 78.1
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 1.5e-113 413.7 273 78.0
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.5e-113 413.7 282 78.0
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.5e-113 413.7 271 80.1
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.5e-113 413.7 273 78.4
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.5e-113 413.7 275 77.1
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.9e-113 413.3 271 79.3
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 2.5e-113 412.9 274 78.1
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.5e-113 412.9 273 78.4
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 2.5e-113 412.9 333 67.0
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 2.5e-113 412.9 281 77.6
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 3.3e-113 412.5 312 71.2
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.3e-113 412.5 347 68.3
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 3.3e-113 412.5 271 79.3
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 4.3e-113 412.1 287 76.0
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 4.3e-113 412.1 262 80.5
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 5.6e-113 411.8 312 73.4
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 5.6e-113 411.8 281 77.6
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 5.6e-113 411.8 293 74.7
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.2e-112 410.6 257 81.3
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 1.2e-112 410.6 271 78.2
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 1.6e-112 410.2 273 78.4
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 1.6e-112 410.2 306 70.9
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 2.1e-112 409.8 279 74.6
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.1e-112 409.8 312 73.1
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.1e-112 409.8 262 80.5
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 3.6e-112 409.1 273 77.7
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 4.7e-112 408.7 275 77.5
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 4.7e-112 408.7 288 73.6
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 4.7e-112 408.7 249 84.3
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 4.7e-112 408.7 275 77.5
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 8.1e-112 407.9 277 76.9
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.1e-111 407.5 293 74.4
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.4e-111 407.1 278 76.3
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 1.8e-111 406.8 279 77.8
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.8e-111 406.8 279 75.6
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.8e-111 406.8 293 74.1
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.4e-111 406.4 275 76.4
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 2.4e-111 406.4 275 77.1
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 3.1e-111 406.0 271 77.9
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 3.1e-111 406.0 271 77.9
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.0e-111 405.6 279 75.3
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.0e-111 405.6 279 75.3
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 4.0e-111 405.6 275 76.0
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 4.0e-111 405.6 307 71.3
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 5.2e-111 405.2 242 85.5
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 8.9e-111 404.4 301 71.8
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 8.9e-111 404.4 275 76.7
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 8.9e-111 404.4 275 76.7
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.2e-110 404.1 247 82.2
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.2e-110 404.1 252 82.9
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 2.0e-110 403.3 279 77.1
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 2.0e-110 403.3 274 76.6
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.6e-110 402.9 289 73.0
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 2.6e-110 402.9 275 77.1
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 3.4e-110 402.5 249 81.9
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 3.4e-110 402.5 249 81.9
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 5.8e-110 401.7 304 70.7
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 7.6e-110 401.4 290 72.8
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.3e-109 400.6 277 75.8
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 2.2e-109 399.8 278 74.5
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 8.4e-109 397.9 275 74.9
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.1e-108 397.5 282 74.1
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.9e-108 396.7 255 78.0
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 2.4e-108 396.4 281 75.4
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.4e-108 396.4 352 62.2
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 2.1e-107 393.3 253 80.6
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 3.5e-107 392.5 260 78.1
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 1.3e-106 390.6 301 70.4
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.3e-106 389.8 276 73.9
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 3.9e-106 389.0 276 75.0
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.3e-105 386.0 278 73.7
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.2e-104 384.0 282 74.1
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 8.1e-104 381.3 253 77.1
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.2e-102 377.5 378 57.7
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.2e-102 377.5 277 70.8
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.2e-102 377.5 329 64.1
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.2e-102 377.5 273 72.9
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 4.9e-101 372.1 225 82.2
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.9e-100 370.2 279 72.8
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.4e-100 369.8 290 66.9
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 7.1e-100 368.2 281 70.5
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 3.0e-98 362.8 285 67.0
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 1.5e-97 360.5 277 68.2
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.3e-96 357.5 183 98.9
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.4e-92 343.2 232 75.4
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 3.5e-91 339.3 272 65.1
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 5.1e-90 335.5 249 68.7
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 4.0e-87 325.9 302 61.9
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.6e-80 303.9 229 70.3
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 3.7e-72 276.2 286 58.4
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 2.6e-57 226.9 183 66.1
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 6.3e-56 222.2 158 74.1
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 3.1e-55 219.9 158 73.4
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 2.0e-49 200.7 149 69.8
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 2.0e-49 200.7 149 69.8
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.1e-44 184.9 104 90.4
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 5.7e-41 172.6 102 90.2
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 9.7e-41 171.8 99 91.9
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 5.0e-29 132.9 126 57.1
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 4.1e-23 113.2 102 61.8
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 4.3e-20 103.2 61 83.6
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 8.0e-19 99.0 64 79.7


User provided reference genes

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