Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17410 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 2.8e-188 661.8 324 100.0
SEGI_25741 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 8.7e-166 587.0 292 99.3
SEGI_18723 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 4.0e-155 551.6 292 92.8
SEGI_19755 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 1.6e-143 513.1 292 85.3
SEGI_41161 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 4.3e-141 505.0 292 83.9
SEGI_15139 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 2.3e-118 429.5 252 83.3
SEGI_17858 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 4.4e-101 372.1 292 62.0
SEGI_17565 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 2.4e-99 366.3 292 60.6
SEGI_24454 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 5.4e-99 365.2 292 61.0
Mapoly0001s0419 Marchantia polymorpha HOM05D010140 ORTHO05D011490 1.4e-54 217.6 288 42.0
SEGI_05285 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 6.4e-52 208.8 114 87.7
SMO147G0052 Selaginella moellendorffii HOM05D010140 ORTHO05D011490 7.1e-51 205.3 300 41.7
SEGI_33304 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 2.3e-49 200.3 276 43.5
SEGI_08459 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 1.8e-46 190.7 110 78.2
SMO364G0124 Selaginella moellendorffii HOM05D010140 ORTHO05D011490 8.7e-41 171.8 280 37.9
Pp3c3_13640 Physcomitrium patens HOM05D010140 ORTHO05D011490 8.7e-33 145.2 258 35.3
SEGI_21178 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 3.3e-32 143.3 198 43.9
Cre02.g095750 Chlamydomonas reinhardtii HOM05D010140 ORTHO05D011490 5.5e-27 125.9 323 31.9
SMO364G0147 Selaginella moellendorffii HOM05D010140 ORTHO05D011490 9.3e-27 125.2 276 30.8
SMO197G0039 Selaginella moellendorffii HOM05D010140 ORTHO05D011490 8.2e-23 112.1 233 34.8
Pp3c3_7450 Physcomitrium patens HOM05D002878 ORTHO05D011490 2.3e-17 94.0 233 32.6
SEGI_30203 Sequoiadendron giganteum HOM05D002878 ORTHO05D011490 1.3e-15 88.2 248 31.5
AagrBONN_evm.TU.Sc2ySwM_117.3274 Anthoceros agrestis HOM05D002878 ORTHO05D011490 1.3e-12 78.2 226 28.3
SMO337G0071 Selaginella moellendorffii HOM05D002878 ORTHO05D011490 8.5e-12 75.5 215 30.2
HPP92_010971 Vanilla planifolia HOM05D002878 ORTHO05D003649 4.2e-11 73.2 207 30.4
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 7.2e-11 72.4 207 29.0
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 1.6e-10 71.2 207 29.5
Lj3g0027459 Lotus japonicus HOM05D002878 ORTHO05D003649 1.6e-10 71.2 212 29.2
GSVIVG01022128001 Vitis vinifera HOM05D002878 ORTHO05D003649 1.6e-10 71.2 207 30.0
Phvul.003G243800 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 2.7e-10 70.5 207 30.0
VMungo1215G2613 Vigna mungo HOM05D002878 ORTHO05D003649 2.7e-10 70.5 207 29.5
Zm00001eb423570 Zea mays HOM05D002878 ORTHO05D003649 2.7e-10 70.5 207 29.0
Haze_15395 Corylus avellana HOM05D002878 ORTHO05D003649 3.6e-10 70.1 207 28.5
Glyma.11G055700 Glycine max HOM05D002878 ORTHO05D003649 3.6e-10 70.1 209 30.6
MELO3C020872.2 Cucumis melo HOM05D002878 ORTHO05D003649 4.7e-10 69.7 207 28.0
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 7.9e-10 68.9 207 28.0
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 7.9e-10 68.9 207 29.0
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 1.0e-09 68.6 207 29.5
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 1.4e-09 68.2 207 30.0
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 1.4e-09 68.2 207 30.0
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 1.4e-09 68.2 207 29.0
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 1.4e-09 68.2 207 29.5
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 1.4e-09 68.2 213 27.7
VMungo0251G0371 Vigna mungo HOM05D002878 ORTHO05D003649 1.4e-09 68.2 207 29.5
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 1.8e-09 67.8 229 27.5
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 1.8e-09 67.8 207 28.0
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 1.8e-09 67.8 207 30.4
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 1.8e-09 67.8 207 27.5
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 1.8e-09 67.8 207 29.5
MBI03_g13473_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 1.8e-09 67.8 206 28.6
Medtr4g022850 Medicago truncatula HOM05D002878 ORTHO05D003649 1.8e-09 67.8 212 28.3
Os04g0448900 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 1.8e-09 67.8 210 28.6
Sp2g29640 Schrenkiella parvula HOM05D002878 ORTHO05D003649 1.8e-09 67.8 207 29.0
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 2.3e-09 67.4 207 28.5
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 2.3e-09 67.4 207 29.0
Lj4g0006017 Lotus japonicus HOM05D002878 ORTHO05D003649 2.3e-09 67.4 207 30.0
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 3.0e-09 67.0 207 28.5
Lalb_Chr01g0008141 Lupinus albus HOM05D002878 ORTHO05D003649 3.0e-09 67.0 213 27.2
Phvul.002G018700 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 3.9e-09 66.6 207 29.0
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 3.9e-09 66.6 229 27.9
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 5.1e-09 66.2 207 29.0
Zm00001eb081460 Zea mays HOM05D002878 ORTHO05D003649 5.1e-09 66.2 207 28.0
Ah.03g145010 Amaranthus hybridus HOM05D002878 ORTHO05D003649 6.7e-09 65.9 209 29.7
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 6.7e-09 65.9 207 28.5
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 6.7e-09 65.9 207 28.5
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 6.7e-09 65.9 206 29.1
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 6.7e-09 65.9 207 29.0
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 6.7e-09 65.9 206 28.2
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 6.7e-09 65.9 206 28.2
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 8.8e-09 65.5 207 27.5
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 8.8e-09 65.5 207 29.0
Carub.0008s2747 Capsella rubella HOM05D002878 ORTHO05D003649 8.8e-09 65.5 207 27.5
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 8.8e-09 65.5 207 28.0
Glyma.09G000600 Glycine max HOM05D002878 ORTHO05D003649 8.8e-09 65.5 218 27.1
Psat0s1281g0080 Pisum sativum HOM05D002878 ORTHO05D003649 8.8e-09 65.5 207 28.0
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 8.8e-09 65.5 197 28.9
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 1.1e-08 65.1 207 28.5
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 1.1e-08 65.1 207 28.5
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 1.1e-08 65.1 207 28.5
Glyma.17G174500 Glycine max HOM05D002878 ORTHO05D003649 1.1e-08 65.1 207 29.5
Phvul.011G214600 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 1.1e-08 65.1 216 26.4
Psat2g167360 Pisum sativum HOM05D002878 ORTHO05D003649 1.1e-08 65.1 207 29.5
QL06p041333 Quercus lobata HOM05D002878 ORTHO05D003649 1.1e-08 65.1 207 27.1
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 1.5e-08 64.7 207 28.0
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 1.5e-08 64.7 207 28.0
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 1.5e-08 64.7 207 28.0
BcaC04g23188 Brassica carinata HOM05D002878 ORTHO05D003649 1.5e-08 64.7 207 28.0
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 1.5e-08 64.7 207 28.5
Sabra05G0112100 Salix brachista HOM05D002878 ORTHO05D003649 1.5e-08 64.7 198 29.3
Sabra07G0039100 Salix brachista HOM05D002878 ORTHO05D003649 1.5e-08 64.7 207 27.5
TPR.G30697 Trifolium pratense HOM05D002878 ORTHO05D003649 1.5e-08 64.7 202 29.7
arahy.Tifrunner.gnm1.ann1.MHSG3V Arachis hypogaea HOM05D002878 ORTHO05D003649 2.0e-08 64.3 217 30.0
MSTRG.2882 Avicennia marina HOM05D002878 ORTHO05D003649 2.0e-08 64.3 208 28.4
ECA246G0578 Erigeron canadensis HOM05D002878 ORTHO05D003649 2.0e-08 64.3 207 28.0
HanXRQChr04g0117341 Helianthus annuus HOM05D002878 ORTHO05D003649 2.0e-08 64.3 216 29.2
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 2.0e-08 64.3 207 27.5
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 2.6e-08 63.9 207 28.5
ATR1126G066 Amborella trichopoda HOM05D002878 ORTHO05D003649 2.6e-08 63.9 206 29.1
ClCG02G012500 Citrullus lanatus HOM05D002878 ORTHO05D003649 2.6e-08 63.9 207 28.0
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 2.6e-08 63.9 208 27.4
Lalb_Chr16g0378561 Lupinus albus HOM05D002878 ORTHO05D003649 2.6e-08 63.9 208 27.4
MBI01_g33890_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 2.6e-08 63.9 225 30.7
Medtr5g017350 Medicago truncatula HOM05D002878 ORTHO05D003649 2.6e-08 63.9 207 29.5
RcHm_v2.0_Chr2g0105701 Rosa chinensis HOM05D002878 ORTHO05D003649 2.6e-08 63.9 207 28.0
Sc07g0000780 Simmondsia chinensis HOM05D002878 ORTHO05D003649 2.6e-08 63.9 207 27.5
TPR.G19064 Trifolium pratense HOM05D002878 ORTHO05D003649 2.6e-08 63.9 207 28.5
C09p11330 Brassica napus HOM05D002878 ORTHO05D003649 3.3e-08 63.5 207 28.5
MD02G1172400 Malus domestica HOM05D002878 ORTHO05D003649 3.3e-08 63.5 209 26.8
arahy.Tifrunner.gnm1.ann1.A5JFP2 Arachis hypogaea HOM05D002878 ORTHO05D003649 4.4e-08 63.2 217 28.6
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 4.4e-08 63.2 208 27.9
AUR62003884 Chenopodium quinoa HOM05D002878 ORTHO05D003649 4.4e-08 63.2 207 28.0
Mapoly0028s0084 Marchantia polymorpha HOM05D002878 ORTHO05D003649 4.4e-08 63.2 203 28.1
EL10Ac6g15742 Beta vulgaris HOM05D002878 ORTHO05D003649 5.7e-08 62.8 207 27.1
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 5.7e-08 62.8 207 28.5
VMungo1127G0209 Vigna mungo HOM05D002878 ORTHO05D003649 5.7e-08 62.8 214 25.2
Oeu031955.2 Olea europaea HOM05D002878 ORTHO05D003649 7.4e-08 62.4 207 27.5
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 9.7e-08 62.0 207 26.6
FAN19G0778 Fragaria x ananassa HOM05D002878 ORTHO05D003649 9.7e-08 62.0 207 28.0
Manes.10G150700 Manihot esculenta HOM05D002878 ORTHO05D003649 9.7e-08 62.0 213 30.0
Prupe.7G133100 Prunus persica HOM05D002878 ORTHO05D003649 9.7e-08 62.0 209 27.3
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 1.3e-07 61.6 207 28.0
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 1.3e-07 61.6 207 28.5
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 1.3e-07 61.6 208 28.8
SMO134G0128 Selaginella moellendorffii HOM05D002878 ORTHO05D003649 1.3e-07 61.6 190 30.5
Hund16322 Selenicereus undatus HOM05D002878 ORTHO05D003649 1.3e-07 61.6 239 27.6
AUR62001926 Chenopodium quinoa HOM05D002878 ORTHO05D003649 1.7e-07 61.2 225 28.9
Ca_24768_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 1.7e-07 61.2 207 28.5
ECA236G1248 Erigeron canadensis HOM05D002878 ORTHO05D003649 1.7e-07 61.2 220 29.5
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 1.7e-07 61.2 207 28.5
PSO384G3105 Papaver somniferum HOM05D002878 ORTHO05D003649 1.7e-07 61.2 210 30.5
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 1.7e-07 61.2 207 27.5
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 1.7e-07 61.2 207 27.1
FvH4_1g16080 Fragaria vesca HOM05D002878 ORTHO05D003649 2.2e-07 60.8 207 27.5
Lalb_Chr00c02g0404101 Lupinus albus HOM05D002878 ORTHO05D003649 2.2e-07 60.8 207 27.1
MD15G1284500 Malus domestica HOM05D002878 ORTHO05D003649 2.2e-07 60.8 208 26.9
TAR633G2681 Trochodendron aralioides HOM05D002878 ORTHO05D003649 2.8e-07 60.5 213 29.1
Actinidia31701 Actinidia chinensis HOM05D002878 ORTHO05D003649 3.7e-07 60.1 217 26.7
Eucgr.I00923 Eucalyptus grandis HOM05D002878 ORTHO05D003649 3.7e-07 60.1 207 29.0
FAN23G1030 Fragaria x ananassa HOM05D002878 ORTHO05D003649 3.7e-07 60.1 207 27.5
Pp3c12_10330 Physcomitrium patens HOM05D002878 ORTHO05D003649 3.7e-07 60.1 203 28.1
PRCOL_00004396 Prasinoderma coloniale HOM05D002878 ORTHO05D003649 6.3e-07 59.3 232 26.3
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 6.3e-07 59.3 207 27.5
Cre02.g082550 Chlamydomonas reinhardtii HOM05D002878 ORTHO05D003649 8.2e-07 58.9 219 26.0
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 8.2e-07 58.9 209 29.2
FAN28G1157 Fragaria x ananassa HOM05D002878 ORTHO05D003649 1.1e-06 58.5 207 27.1
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 1.1e-06 58.5 207 26.6
vmacro13619 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 1.1e-06 58.5 242 28.1
Migut.K00767 Erythranthe guttata HOM05D002878 ORTHO05D003649 1.4e-06 58.2 208 28.4
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 1.8e-06 57.8 207 27.5
Potri.007G044300 Populus trichocarpa HOM05D002878 ORTHO05D003649 1.8e-06 57.8 207 26.6
CAN.G660.9 Capsicum annuum HOM05D002878 ORTHO05D003649 2.4e-06 57.4 197 28.4
CDE10G0029 Ceratophyllum demersum HOM05D002878 ORTHO05D003649 2.4e-06 57.4 208 26.9
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 3.1e-06 57.0 207 28.0
MCO08G194 Micromonas commoda HOM05D002878 ORTHO05D003649 4.1e-06 56.6 220 28.2
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 4.1e-06 56.6 207 28.0
Dinv43928 Davidia involucrata HOM05D002878 ORTHO05D003649 5.3e-06 56.2 211 28.4
QL04p003128 Quercus lobata HOM05D002878 ORTHO05D003649 5.3e-06 56.2 214 26.6
unitig_27.g25327 Utricularia gibba HOM05D002878 ORTHO05D003649 7.0e-06 55.8 209 28.7


User provided reference genes

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