Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17131 Sequoiadendron giganteum HOM05D000029 ORTHO05D383880 3.5e-66 256.9 555 100.0
SEGI_14371 Sequoiadendron giganteum HOM05D000029 ORTHO05D006111 8.0e-10 69.7 94 39.4
CARHR279690 Cardamine hirsuta HOM05D000029 ORTHO05D000854 4.0e-09 67.4 101 45.5
Lsat_1_v5_gn_8_10241 Lactuca sativa HOM05D000029 ORTHO05D006111 4.0e-09 67.4 80 43.8
SEGI_13264 Sequoiadendron giganteum HOM05D000029 ORTHO05D006111 4.0e-09 67.4 81 46.9
THA.LOC104819280 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 8.8e-09 66.2 97 42.3
Aa31LG1G16360 Aethionema arabicum HOM05D000029 ORTHO05D000854 1.2e-08 65.9 101 42.6
THA.LOC104798420 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 3.4e-08 64.3 92 45.7
AL8G43410 Arabidopsis lyrata HOM05D000029 ORTHO05D000854 5.7e-08 63.5 101 43.6
Nitab4.5_0008164g0010 Nicotiana tabacum HOM05D000033 ORTHO05D007591 9.7e-08 62.8 77 42.9
SEGI_31478 Sequoiadendron giganteum HOM05D000029 ORTHO05D006111 9.7e-08 62.8 74 48.6
Thhalv10003584m.g Eutrema salsugineum HOM05D000029 ORTHO05D000854 1.3e-07 62.4 96 42.7
Solyc03g093330.4 Solanum lycopersicum HOM05D000029 ORTHO05D006111 1.3e-07 62.4 102 39.2
Atru.chr5.1861 Acer truncatum HOM05D000029 ORTHO05D003419 1.7e-07 62.0 92 39.1
AT5G65700 Arabidopsis thaliana HOM05D000029 ORTHO05D000854 1.7e-07 62.0 101 42.6
Nitab4.5_0000016g0030 Nicotiana tabacum HOM05D000033 ORTHO05D007591 1.7e-07 62.0 77 41.6
Pp3c13_13360 Physcomitrium patens HOM05D000029 ORTHO05D000854 2.2e-07 61.6 104 37.5
Sp2g28800 Schrenkiella parvula HOM05D000029 ORTHO05D000854 2.2e-07 61.6 101 41.6
Carub.0008s2660 Capsella rubella HOM05D000029 ORTHO05D000854 2.8e-07 61.2 101 42.6
FvH4_7g27270 Fragaria vesca HOM05D000029 ORTHO05D006111 2.8e-07 61.2 101 37.6
FAN06G2406 Fragaria x ananassa HOM05D000029 ORTHO05D006111 2.8e-07 61.2 101 37.6
Aa31LG4G18150 Aethionema arabicum HOM05D000029 ORTHO05D000854 3.7e-07 60.8 96 42.7
EL10Ac4g07568 Beta vulgaris HOM05D000021 ORTHO05D008832 3.7e-07 60.8 84 38.1
BcaC01g02841 Brassica carinata HOM05D000029 ORTHO05D000854 3.7e-07 60.8 95 43.2
ECA233G5029 Erigeron canadensis HOM05D000029 ORTHO05D006111 3.7e-07 60.8 104 38.5
Nn6g33906 Nelumbo nucifera HOM05D000029 ORTHO05D006111 3.7e-07 60.8 96 37.5
Oeu033756.1 Olea europaea HOM05D000033 ORTHO05D007591 4.8e-07 60.5 96 37.5
FAN06G4115 Fragaria x ananassa HOM05D000029 ORTHO05D006111 6.3e-07 60.1 97 38.1
Lj8C43T13 Lonicera japonica HOM05D000029 ORTHO05D006111 6.3e-07 60.1 93 38.7
Sopen03g024120 Solanum pennellii HOM05D000029 ORTHO05D006111 6.3e-07 60.1 102 38.2
ATR0057G078 Amborella trichopoda HOM05D000029 ORTHO05D006111 8.3e-07 59.7 70 45.7
Potri.002G256500 Populus trichocarpa HOM05D000029 ORTHO05D003419 8.3e-07 59.7 98 41.8
Thhalv10010092m.g Eutrema salsugineum HOM05D000029 ORTHO05D000854 1.1e-06 59.3 81 45.7
FAN01G0450 Fragaria x ananassa HOM05D000029 ORTHO05D006111 1.1e-06 59.3 101 35.6
Sabra02G0195000 Salix brachista HOM05D000029 ORTHO05D003419 1.1e-06 59.3 98 42.9
Sopen03g017660 Solanum pennellii HOM05D000033 ORTHO05D007591 1.1e-06 59.3 77 44.2
TWI18G1401 Tripterygium wilfordii HOM05D000029 ORTHO05D003419 1.1e-06 59.3 82 42.7
TAR628G0093 Trochodendron aralioides HOM05D000029 ORTHO05D008832 1.1e-06 59.3 90 44.4
EL10Ac4g07591 Beta vulgaris HOM05D000053 ORTHO05D008832 1.4e-06 58.9 91 37.4
Nn5g29128 Nelumbo nucifera HOM05D000029 ORTHO05D000854 1.4e-06 58.9 103 36.9
TAR375G1068 Trochodendron aralioides HOM05D000029 ORTHO05D006111 1.4e-06 58.9 62 50.0
MSTRG.12517 Avicennia marina HOM05D000029 ORTHO05D003419 1.8e-06 58.5 101 35.6
BcaC01g02816 Brassica carinata HOM05D000029 ORTHO05D000854 1.8e-06 58.5 104 39.4
C03p59960 Brassica napus HOM05D000029 ORTHO05D000854 1.8e-06 58.5 104 39.4
BolC3t18260H Brassica oleracea HOM05D000029 ORTHO05D000854 1.8e-06 58.5 104 39.4
BraA03t13863Z Brassica rapa HOM05D000029 ORTHO05D000854 1.8e-06 58.5 99 39.4
CARHR205970 Cardamine hirsuta HOM05D000029 ORTHO05D002544 1.8e-06 58.5 94 37.2
FAN10G2044 Fragaria x ananassa HOM05D000029 ORTHO05D006111 1.8e-06 58.5 97 36.1
Nn1g00950 Nelumbo nucifera HOM05D000029 ORTHO05D006111 1.8e-06 58.5 63 46.0
Potri.002G019900 Populus trichocarpa HOM05D000029 ORTHO05D000854 1.8e-06 58.5 95 42.1
Potri.005G241500 Populus trichocarpa HOM05D000029 ORTHO05D000854 1.8e-06 58.5 99 40.4
Sed0020545 Sechium edule HOM05D000029 ORTHO05D006111 1.8e-06 58.5 77 45.5
Solyc03g064010.4 Solanum lycopersicum HOM05D000033 ORTHO05D007591 1.8e-06 58.5 77 44.2
MSTRG.26099 Avicennia marina HOM05D000033 ORTHO05D007591 2.4e-06 58.2 69 42.0
AUR62002221 Chenopodium quinoa HOM05D000029 ORTHO05D006111 2.4e-06 58.2 73 45.2
RcHm_v2.0_Chr1g0374101 Rosa chinensis HOM05D000029 ORTHO05D006111 2.4e-06 58.2 95 37.9
PGSC0003DMG400018849 Solanum tuberosum HOM05D000029 ORTHO05D006111 2.4e-06 58.2 102 37.3
A06p32580 Brassica napus HOM05D000029 ORTHO05D000854 3.1e-06 57.8 95 40.0
BraA06t26186Z Brassica rapa HOM05D000029 ORTHO05D000854 3.1e-06 57.8 95 40.0
DCAR_018116 Daucus carota HOM05D000029 ORTHO05D006111 3.1e-06 57.8 102 36.3
Dinv16847 Davidia involucrata HOM05D000029 ORTHO05D006111 3.1e-06 57.8 101 36.6
Oeu064330.1 Olea europaea HOM05D000016 ORTHO05D000433 3.1e-06 57.8 79 39.2
PGSC0003DMG400004146 Solanum tuberosum HOM05D000029 ORTHO05D003419 3.1e-06 57.8 91 40.7
MSTRG.7641 Avicennia marina HOM05D000033 ORTHO05D001688 4.1e-06 57.4 103 35.0
CAN.G48.44 Capsicum annuum HOM05D000029 ORTHO05D006111 4.1e-06 57.4 72 45.8
Solyc04g050170.4 Solanum lycopersicum HOM05D000029 ORTHO05D003419 4.1e-06 57.4 101 36.6
PGSC0003DMG400012929 Solanum tuberosum HOM05D000033 ORTHO05D007591 4.1e-06 57.4 77 42.9
AT1G25320 Arabidopsis thaliana HOM05D000033 ORTHO05D001688 5.3e-06 57.0 76 39.5
MSTRG.2455 Avicennia marina HOM05D000033 ORTHO05D001688 5.3e-06 57.0 93 31.2
EL10Ac4g07570 Beta vulgaris HOM05D000053 ORTHO05D000035 5.3e-06 57.0 81 39.5
BcaNung04293 Brassica carinata HOM05D000029 ORTHO05D003419 5.3e-06 57.0 83 37.3
Dinv26983 Davidia involucrata HOM05D000029 ORTHO05D001395 5.3e-06 57.0 100 34.0
Manes.06G133300 Manihot esculenta HOM05D000029 ORTHO05D006111 5.3e-06 57.0 104 38.5
Nitab4.5_0012904g0010 Nicotiana tabacum HOM05D000029 ORTHO05D006111 5.3e-06 57.0 103 37.9
Peaxi162Scf01876g00003 Petunia axillaris HOM05D000029 ORTHO05D006111 5.3e-06 57.0 102 38.2
Hund07177 Selenicereus undatus HOM05D000029 ORTHO05D003419 5.3e-06 57.0 73 47.9
Ah.03g136280 Amaranthus hybridus HOM05D000113 ORTHO05D004634 7.0e-06 56.6 99 34.3
CARHR104130 Cardamine hirsuta HOM05D000029 ORTHO05D008675 7.0e-06 56.6 66 45.5
QL06p038048 Quercus lobata HOM05D000029 ORTHO05D001395 7.0e-06 56.6 84 39.3
Solyc05g051640.4 Solanum lycopersicum HOM05D000029 ORTHO05D006111 7.0e-06 56.6 109 37.6
MSTRG.19889 Avicennia marina HOM05D000033 ORTHO05D007591 9.1e-06 56.2 77 39.0
AUR62015433 Chenopodium quinoa HOM05D000029 ORTHO05D006111 9.1e-06 56.2 73 43.8
HanXRQChr13g0396581 Helianthus annuus HOM05D000029 ORTHO05D003419 9.1e-06 56.2 72 47.2
Lj1C978T3 Lonicera japonica HOM05D000029 ORTHO05D006111 9.1e-06 56.2 80 42.5
Manes.13G105900 Manihot esculenta HOM05D000029 ORTHO05D000854 9.1e-06 56.2 96 40.6
Nn1g05942 Nelumbo nucifera HOM05D000029 ORTHO05D000854 9.1e-06 56.2 102 39.2
Rhsim04G0098900 Rhododendron simsii HOM05D000033 ORTHO05D007591 9.1e-06 56.2 96 33.3
TAR381G1402 Trochodendron aralioides HOM05D000029 ORTHO05D000854 9.1e-06 56.2 100 38.0


User provided reference genes

Program Settings