Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.1e-77 293.1 140 100.0
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.3e-35 151.4 132 62.9
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.3e-33 146.7 107 70.1
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 1.7e-33 146.4 130 66.2
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 2.9e-33 145.6 106 70.8
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 2.9e-33 145.6 106 70.8
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 2.9e-33 145.6 138 60.1
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 2.9e-33 145.6 107 70.1
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 3.8e-33 145.2 138 60.1
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 3.8e-33 145.2 106 72.6
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.4e-32 142.5 106 70.8
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 3.2e-32 142.1 106 70.8
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 5.4e-32 141.4 106 70.8
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 5.4e-32 141.4 112 67.0
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 7.1e-32 141.0 105 71.4
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 9.3e-32 140.6 106 69.8
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 9.3e-32 140.6 117 65.8
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 9.3e-32 140.6 117 65.8
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 9.3e-32 140.6 117 65.8
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 1.2e-31 140.2 106 67.9
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 1.2e-31 140.2 106 67.9
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 2.1e-31 139.4 106 67.0
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 3.5e-31 138.7 106 66.0
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 6.0e-31 137.9 107 68.2
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 7.9e-31 137.5 107 69.2
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.8e-30 136.3 107 68.2
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 5.1e-30 134.8 106 64.2
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 5.1e-30 134.8 106 67.0
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.5e-29 133.3 117 63.2
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 3.3e-29 132.1 133 58.6
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 5.6e-29 131.3 108 66.7
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 5.6e-29 131.3 107 66.4
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 5.6e-29 131.3 107 66.4
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 5.6e-29 131.3 107 66.4
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 7.4e-29 131.0 108 65.7
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 7.4e-29 131.0 105 67.6
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 1.3e-28 130.2 106 63.2
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 1.6e-28 129.8 105 62.9
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.6e-28 129.8 138 58.0
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.1e-27 127.1 105 63.8
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 1.4e-27 126.7 105 60.0
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.8e-27 126.3 107 66.4
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 2.4e-27 125.9 106 64.2
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 2.4e-27 125.9 130 55.4
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 3.1e-27 125.6 128 56.2
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 5.3e-27 124.8 107 65.4
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 1.5e-26 123.2 127 58.3
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 2.0e-26 122.9 106 63.2
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 2.0e-26 122.9 106 64.2
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 4.5e-26 121.7 105 62.9
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 4.5e-26 121.7 101 67.3
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 5.8e-26 121.3 106 65.1
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 5.8e-26 121.3 119 60.5
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 5.8e-26 121.3 106 62.3
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 7.6e-26 120.9 106 62.3
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 7.6e-26 120.9 108 62.0
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 9.9e-26 120.6 119 59.7
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.3e-25 120.2 108 63.9
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 2.9e-25 119.0 107 60.7
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.9e-25 119.0 106 61.3
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 2.9e-25 119.0 103 62.1
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 4.9e-25 118.2 110 60.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 8.4e-25 117.5 105 63.8
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 1.1e-24 117.1 106 59.4
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.1e-24 117.1 105 59.0
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 2.4e-24 115.9 110 60.0
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 2.4e-24 115.9 116 60.3
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 3.2e-24 115.5 108 63.9
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 4.2e-24 115.2 108 58.3
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 5.5e-24 114.8 127 53.5
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 7.1e-24 114.4 127 53.5
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 7.1e-24 114.4 105 61.9
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 9.3e-24 114.0 89 69.7
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.2e-23 113.6 108 62.0
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.6e-23 113.2 109 64.2
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.7e-23 112.5 108 62.0
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.0e-22 110.5 105 56.2
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 1.8e-22 109.8 108 57.4
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 3.9e-22 108.6 108 55.6
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 5.1e-22 108.2 114 57.0
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 5.1e-22 108.2 107 58.9
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 6.7e-22 107.8 107 55.1
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.1e-21 107.1 107 57.9
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.9e-21 106.3 141 51.1
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 4.3e-21 105.1 109 58.7
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 5.6e-21 104.8 109 58.7
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 7.4e-21 104.4 105 55.2
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 1.3e-20 103.6 104 60.6
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 2.1e-20 102.8 111 56.8
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 8.1e-20 100.9 113 54.9
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 3.1e-19 99.0 109 52.3
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.1e-19 99.0 103 55.3
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.0e-18 96.3 106 55.7
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.6e-18 95.9 102 56.9
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.0e-17 94.0 156 47.4
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 3.8e-17 92.0 93 58.1
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 4.2e-16 88.6 111 52.3
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 9.3e-16 87.4 108 55.6
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 9.3e-16 87.4 90 57.8
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.2e-15 87.0 107 50.5
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 1.6e-15 86.7 107 49.5
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 2.7e-15 85.9 108 54.6
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 3.5e-15 85.5 108 54.6
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 3.5e-15 85.5 108 54.6
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 3.5e-15 85.5 108 54.6
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 3.5e-15 85.5 108 54.6
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.3e-14 83.6 105 53.3
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.1e-13 80.5 104 51.0
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.3e-12 77.0 114 50.9
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.4e-11 72.8 111 46.8
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 2.4e-11 72.8 118 44.9
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 1.2e-10 70.5 74 55.4
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 4.5e-10 68.6 80 47.5
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 5.0e-09 65.1 60 60.0
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.9e-08 63.2 146 37.0
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.6e-07 60.1 60 58.3
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.1e-07 59.7 124 40.3
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 2.1e-07 59.7 80 46.2
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 4.6e-07 58.5 131 38.9
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.6e-07 58.5 151 35.1
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.8e-06 56.6 124 37.9


User provided reference genes

Program Settings