Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17099 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 6.7e-165 583.9 295 100.0
SEGI_11294 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 6.0e-65 251.9 142 87.3
SEGI_09406 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 7.9e-65 251.5 287 53.7
SEGI_01502 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 1.9e-58 230.3 254 53.1
ATR0737G089 Amborella trichopoda HOM05D002373 ORTHO05D005805 1.6e-49 200.7 295 41.7
Rhsim04G0021600 Rhododendron simsii HOM05D002373 ORTHO05D005805 8.7e-48 194.9 238 45.4
Glyma.06G240400 Glycine max HOM05D002373 ORTHO05D005805 1.6e-46 190.7 275 42.2
PSO832G3381 Papaver somniferum HOM05D002373 ORTHO05D005805 3.7e-46 189.5 291 40.2
Nn1g04126 Nelumbo nucifera HOM05D002373 ORTHO05D005805 4.8e-46 189.1 324 40.1
VMungo1127G0771 Vigna mungo HOM05D002373 ORTHO05D005805 4.8e-46 189.1 287 41.5
Lj8A155T98 Lonicera japonica HOM05D002373 ORTHO05D005805 6.3e-46 188.7 289 41.9
QL08p022123 Quercus lobata HOM05D002373 ORTHO05D005805 6.3e-46 188.7 288 40.3
COL.COLO4_27181 Corchorus olitorius HOM05D002373 ORTHO05D005805 1.4e-45 187.6 291 40.2
Glyma.12G152100 Glycine max HOM05D002373 ORTHO05D005805 1.4e-45 187.6 285 42.5
MD03G1228500 Malus domestica HOM05D002373 ORTHO05D005805 1.8e-45 187.2 271 43.5
CSS0025198 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 2.4e-45 186.8 292 40.4
PSO210G2728 Papaver somniferum HOM05D002373 ORTHO05D005805 2.4e-45 186.8 300 38.7
Actinidia18767 Actinidia chinensis HOM05D002373 ORTHO05D005805 4.1e-45 186.0 312 37.8
FvH4_3g19810 Fragaria vesca HOM05D002373 ORTHO05D005805 4.1e-45 186.0 284 40.5
FAN11G0806 Fragaria x ananassa HOM05D002373 ORTHO05D005805 4.1e-45 186.0 284 40.5
Potri.011G118500 Populus trichocarpa HOM05D002373 ORTHO05D005805 4.1e-45 186.0 290 41.0
TWI38G2145 Tripterygium wilfordii HOM05D002373 ORTHO05D005805 4.1e-45 186.0 327 38.2
Gorai.002G069500 Gossypium raimondii HOM05D002373 ORTHO05D005805 6.9e-45 185.3 291 40.2
vmacro09528 Vaccinium macrocarpon HOM05D002373 ORTHO05D005805 6.9e-45 185.3 291 39.5
CSS0013354 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 9.0e-45 184.9 292 40.4
Ciclev10007467m.g Citrus clementina HOM05D002373 ORTHO05D005805 9.0e-45 184.9 329 36.2
Gohir.D01G049600 Gossypium hirsutum HOM05D002373 ORTHO05D005805 9.0e-45 184.9 291 40.2
CDE10G0260 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 1.2e-44 184.5 291 41.6
Cc05_g11960 Coffea canephora HOM05D002373 ORTHO05D005805 1.2e-44 184.5 289 40.8
Gohir.A01G063200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 1.2e-44 184.5 291 40.5
Hma1.2p1_0458F.1_g157050 Hydrangea macrophylla HOM05D002373 ORTHO05D005805 1.2e-44 184.5 276 41.3
Ca_23054_v3 Cicer arietinum L. HOM05D002373 ORTHO05D005805 1.5e-44 184.1 295 39.0
FAN21G3426 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.5e-44 184.1 318 37.4
Medtr8g463270 Medicago truncatula HOM05D002373 ORTHO05D005805 1.5e-44 184.1 296 40.2
Aqoxy4G00738 Aquilegia oxysepala HOM05D002373 ORTHO05D005805 2.0e-44 183.7 288 43.1
RcHm_v2.0_Chr5g0033231 Rosa chinensis HOM05D002373 ORTHO05D005805 2.0e-44 183.7 316 40.5
Sabra11G0103400 Salix brachista HOM05D002373 ORTHO05D005805 2.6e-44 183.3 290 40.3
Hund22839 Selenicereus undatus HOM05D002373 ORTHO05D005805 2.6e-44 183.3 290 39.7
TAR627G0461 Trochodendron aralioides HOM05D002373 ORTHO05D005805 2.6e-44 183.3 293 39.6
Manes.15G087600 Manihot esculenta HOM05D002373 ORTHO05D005805 3.4e-44 183.0 293 39.2
Phvul.011G158800 Phaseolus vulgaris HOM05D002373 ORTHO05D005805 3.4e-44 183.0 287 40.1
Lsat_1_v5_gn_9_97921 Lactuca sativa HOM05D002373 ORTHO05D005805 4.5e-44 182.6 263 42.6
Atru.chr2.2485 Acer truncatum HOM05D002373 ORTHO05D005805 5.9e-44 182.2 289 39.8
FAN25G1482 Fragaria x ananassa HOM05D002373 ORTHO05D005805 5.9e-44 182.2 323 39.3
Lj3g0007605 Lotus japonicus HOM05D002373 ORTHO05D005805 5.9e-44 182.2 292 39.7
Lalb_Chr03g0030661 Lupinus albus HOM05D002373 ORTHO05D005805 5.9e-44 182.2 294 39.1
Nitab4.5_0001241g0050 Nicotiana tabacum HOM05D002373 ORTHO05D005805 5.9e-44 182.2 175 53.1
Cfa020575 Carpinus fangiana HOM05D002373 ORTHO05D005805 7.7e-44 181.8 291 38.5
Haze_09436 Corylus avellana HOM05D002373 ORTHO05D005805 7.7e-44 181.8 291 38.8
TPR.G22533 Trifolium pratense HOM05D002373 ORTHO05D005805 7.7e-44 181.8 296 39.5
CiPaw.11G170300 Carya illinoinensis HOM05D002373 ORTHO05D005805 1.0e-43 181.4 322 39.4
DCAR_013112 Daucus carota HOM05D002373 ORTHO05D005805 1.0e-43 181.4 144 60.4
Sopen07g031270 Solanum pennellii HOM05D002373 ORTHO05D005805 1.3e-43 181.0 175 52.0
Gohir.D05G352400 Gossypium hirsutum HOM05D002373 ORTHO05D005805 1.7e-43 180.6 143 61.5
Gorai.009G384500 Gossypium raimondii HOM05D002373 ORTHO05D005805 2.9e-43 179.9 143 61.5
Thecc.07G091400 Theobroma cacao HOM05D002373 ORTHO05D005805 3.8e-43 179.5 291 39.9
CAN.G162.52 Capsicum annuum HOM05D002373 ORTHO05D005805 5.0e-43 179.1 175 51.4
Dinv00353 Davidia involucrata HOM05D002373 ORTHO05D005805 5.0e-43 179.1 281 40.2
Dinv14923 Davidia involucrata HOM05D002373 ORTHO05D005805 5.0e-43 179.1 281 40.2
Sc01g0008920 Simmondsia chinensis HOM05D002373 ORTHO05D005805 5.0e-43 179.1 294 37.8
Peaxi162Scf00069g00161 Petunia axillaris HOM05D002373 ORTHO05D005805 6.5e-43 178.7 178 52.8
Solyc07g063080.4 Solanum lycopersicum HOM05D002373 ORTHO05D005805 6.5e-43 178.7 175 50.9
PGSC0003DMG400012444 Solanum tuberosum HOM05D002373 ORTHO05D005805 6.5e-43 178.7 279 39.4
Gohir.A04G032200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 8.5e-43 178.3 143 60.8
Psat4g163960 Pisum sativum HOM05D002373 ORTHO05D005805 8.5e-43 178.3 276 42.0
FAN16G1089 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.4e-42 177.6 276 42.0
Lsat_1_v5_gn_5_128020 Lactuca sativa HOM05D002373 ORTHO05D005805 1.4e-42 177.6 143 59.4
GSVIVG01014319001 Vitis vinifera HOM05D002373 ORTHO05D005805 1.4e-42 177.6 180 51.7
Ah.04g164800 Amaranthus hybridus HOM05D002373 ORTHO05D005805 1.9e-42 177.2 287 39.0
CiPaw.12G118900 Carya illinoinensis HOM05D002373 ORTHO05D005805 1.9e-42 177.2 291 38.8
Nitab4.5_0001336g0070 Nicotiana tabacum HOM05D002373 ORTHO05D005805 1.9e-42 177.2 175 51.4
PGR031G0335 Punica granatum HOM05D002373 ORTHO05D005805 1.9e-42 177.2 143 61.5
Sed0015726 Sechium edule HOM05D002373 ORTHO05D005805 2.5e-42 176.8 178 52.2
CANSAT56G0489 Cannabis sativa HOM05D002373 ORTHO05D005805 3.2e-42 176.4 320 37.5
CSS0014083 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 4.2e-42 176.0 143 59.4
CSS0015785 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 4.2e-42 176.0 143 59.4
Dinv20180 Davidia involucrata HOM05D002373 ORTHO05D005805 4.2e-42 176.0 136 61.8
ECA234G1789 Erigeron canadensis HOM05D002373 ORTHO05D005805 4.2e-42 176.0 134 61.2
Lalb_Chr01g0016821 Lupinus albus HOM05D002373 ORTHO05D005805 4.2e-42 176.0 144 59.0
SMO364G0144 Selaginella moellendorffii HOM05D002373 ORTHO05D005805 4.2e-42 176.0 270 41.9
Cpa.g.sc80.74 Carica papaya HOM05D002373 ORTHO05D005805 5.5e-42 175.6 315 38.4
ECA240G3893 Erigeron canadensis HOM05D002373 ORTHO05D005805 7.2e-42 175.3 277 39.0
Duzib213G0111 Durio zibethinus HOM05D002373 ORTHO05D005805 9.4e-42 174.9 292 38.4
Aa31LG10G1990 Aethionema arabicum HOM05D002373 ORTHO05D005805 1.6e-41 174.1 162 54.9
MSTRG.15235 Avicennia marina HOM05D002373 ORTHO05D005805 1.6e-41 174.1 170 50.6
Os01g0748000 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D005805 2.1e-41 173.7 336 37.2
SGA_v2.0_scaffold73G24259 Striga asiatica HOM05D002373 ORTHO05D005805 2.1e-41 173.7 299 37.8
Prupe.4G180200 Prunus persica HOM05D002373 ORTHO05D005805 2.7e-41 173.3 270 41.1
Thhalv10011245m.g Eutrema salsugineum HOM05D002373 ORTHO05D005805 3.6e-41 172.9 162 54.3
PSO782G4223 Papaver somniferum HOM05D002373 ORTHO05D005805 6.1e-41 172.2 166 53.0
THA.LOC104818083 Tarenaya hassleriana HOM05D002373 ORTHO05D005805 6.1e-41 172.2 180 50.6
Ah.06g184400 Amaranthus hybridus HOM05D002373 ORTHO05D005805 7.9e-41 171.8 172 51.2
AL1G61500 Arabidopsis lyrata HOM05D002373 ORTHO05D005805 7.9e-41 171.8 162 53.7
Migut.M00800 Erythranthe guttata HOM05D002373 ORTHO05D005805 7.9e-41 171.8 285 39.6
Eucgr.F03311 Eucalyptus grandis HOM05D002373 ORTHO05D005805 1.4e-40 171.0 278 38.8
Sed0011872 Sechium edule HOM05D002373 ORTHO05D005805 1.4e-40 171.0 178 51.1
BcaC08g44046 Brassica carinata HOM05D002373 ORTHO05D005805 1.8e-40 170.6 162 53.7
Zm00001eb153090 Zea mays HOM05D002373 ORTHO05D005805 1.8e-40 170.6 287 38.7
CDE10G0423 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 2.3e-40 170.2 216 47.2
HanXRQChr10g0305641 Helianthus annuus HOM05D002373 ORTHO05D005805 2.3e-40 170.2 134 57.5
AT1G53140 Arabidopsis thaliana HOM05D002373 ORTHO05D005805 3.9e-40 169.5 279 39.4
arahy.Tifrunner.gnm1.ann1.7QC79Z Arachis hypogaea HOM05D002373 ORTHO05D005805 3.9e-40 169.5 144 56.9
BolC6t36627H Brassica oleracea HOM05D002373 ORTHO05D005805 3.9e-40 169.5 158 54.4
AUR62039199 Chenopodium quinoa HOM05D002373 ORTHO05D005805 3.9e-40 169.5 285 37.9
HanXRQChr12g0361121 Helianthus annuus HOM05D002373 ORTHO05D005805 3.9e-40 169.5 180 49.4
Carub.0001s4230 Capsella rubella HOM05D002373 ORTHO05D005805 6.7e-40 168.7 162 53.1
A05p18610 Brassica napus HOM05D002373 ORTHO05D005805 8.8e-40 168.3 140 58.6
C06p14470 Brassica napus HOM05D002373 ORTHO05D005805 8.8e-40 168.3 140 58.6
BraA01t02609Z Brassica rapa HOM05D002373 ORTHO05D005805 8.8e-40 168.3 162 53.1
BraA05t20752Z Brassica rapa HOM05D002373 ORTHO05D005805 8.8e-40 168.3 140 58.6
CARHR043360 Cardamine hirsuta HOM05D002373 ORTHO05D005805 8.8e-40 168.3 291 38.8
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 1.1e-39 167.9 140 58.6
Oeu024908.1 Olea europaea HOM05D002373 ORTHO05D005805 1.1e-39 167.9 287 38.3
arahy.Tifrunner.gnm1.ann1.YQ4YNY Arachis hypogaea HOM05D002373 ORTHO05D005805 1.5e-39 167.5 140 57.9
AUR62019435 Chenopodium quinoa HOM05D002373 ORTHO05D005805 1.5e-39 167.5 285 37.9
A01p26800 Brassica napus HOM05D002373 ORTHO05D005805 2.0e-39 167.2 141 58.2
Zm00001eb371030 Zea mays HOM05D002373 ORTHO05D005805 2.0e-39 167.2 338 36.4
Sp1g39690 Schrenkiella parvula HOM05D002373 ORTHO05D005805 3.3e-39 166.4 301 38.5
SHI19230 Sapria himalayana HOM05D002373 ORTHO05D005805 5.7e-39 165.6 158 55.1
CsaV3_4G033660 Cucumis sativus L. HOM05D002373 ORTHO05D005805 3.7e-38 162.9 338 37.0
MSTRG.12902 Avicennia marina HOM05D002373 ORTHO05D005805 6.3e-38 162.2 132 59.1
CDE10G1360 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 1.8e-37 160.6 216 47.2
HanXRQChr10g0302701 Helianthus annuus HOM05D002373 ORTHO05D005805 1.8e-37 160.6 134 54.5
MELO3C016695.2 Cucumis melo HOM05D002373 ORTHO05D005805 6.9e-37 158.7 204 44.1
ClCG11G018040 Citrullus lanatus HOM05D002373 ORTHO05D005805 1.2e-36 157.9 314 37.3
SalBow6G1433 Salvia bowleyana HOM05D002373 ORTHO05D005805 1.5e-36 157.5 132 57.6
SalBow6G5097 Salvia bowleyana HOM05D002373 ORTHO05D005805 1.5e-36 157.5 132 57.6
AagrBONN_evm.TU.Sc2ySwM_368.419 Anthoceros agrestis HOM05D002373 ORTHO05D005805 1.9e-34 150.6 340 32.6
Mapoly0084s0004 Marchantia polymorpha HOM05D002373 ORTHO05D005805 9.4e-34 148.3 152 51.3
EL10Ac4g08196 Beta vulgaris HOM05D002373 ORTHO05D005805 1.6e-33 147.5 286 35.7
Aqoxy1G02769 Aquilegia oxysepala HOM05D002373 ORTHO05D005805 4.5e-28 129.4 126 54.0
SEGI_17035 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 2.2e-27 127.1 83 79.5
Pp3c13_12110 Physcomitrium patens HOM05D002373 ORTHO05D005805 1.9e-26 124.0 305 31.1
unitig_26.g9526 Utricularia gibba HOM05D002373 ORTHO05D005805 9.7e-23 111.7 310 31.9
arahy.Tifrunner.gnm1.ann1.B0SKQG Arachis hypogaea HOM05D000980 ORTHO05D000649 2.8e-22 110.2 122 49.2
BcaB02g10931 Brassica carinata HOM05D002373 ORTHO05D005805 2.8e-22 110.2 117 51.3
MD11G1249600 Malus domestica HOM05D002373 ORTHO05D005805 1.3e-19 101.3 99 55.6
SEGI_17365 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 1.1e-18 98.2 52 84.6
Cre12.g529450 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D005805 2.5e-18 97.1 134 40.3
Actinidia35247 Actinidia chinensis HOM05D002373 ORTHO05D005805 8.8e-16 88.6 127 43.3
SEGI_27326 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 2.6e-15 87.0 59 84.7
HPP92_006380 Vanilla planifolia HOM05D002373 ORTHO05D005805 5.7e-15 85.9 268 32.5
HanXRQChr12g0364191 Helianthus annuus HOM05D002373 ORTHO05D005805 4.8e-14 82.8 258 29.1
BcaB02g10932 Brassica carinata HOM05D002373 ORTHO05D005805 2.0e-12 77.4 243 32.1


User provided reference genes

Program Settings