Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17003 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 8.6e-165 583.6 292 100.0
vmacro10756 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 6.8e-85 318.2 225 68.0
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 9.8e-84 314.3 225 66.7
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 8.3e-83 311.2 225 65.3
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 1.8e-82 310.1 225 67.6
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 4.1e-82 308.9 225 66.2
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 1.6e-81 307.0 229 64.2
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 3.5e-81 305.8 225 64.9
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 4.5e-81 305.4 225 64.9
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 7.7e-81 304.7 225 64.0
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 1.0e-80 304.3 225 64.4
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 1.0e-80 304.3 225 66.2
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 1.3e-80 303.9 225 65.3
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.7e-80 303.5 225 64.4
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 2.9e-80 302.8 225 64.9
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 3.8e-80 302.4 225 65.3
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 5.0e-80 302.0 225 64.0
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 8.6e-80 301.2 225 64.9
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 1.1e-79 300.8 225 64.4
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 1.1e-79 300.8 225 64.4
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.9e-79 300.1 225 64.4
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 2.5e-79 299.7 225 64.0
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 3.3e-79 299.3 225 64.9
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 4.3e-79 298.9 225 63.6
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 5.6e-79 298.5 231 63.2
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 1.6e-78 297.0 225 63.6
Nitab4.5_0001529g0040 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.6e-78 297.0 225 62.7
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 2.1e-78 296.6 225 64.4
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 6.1e-78 295.0 225 63.6
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.0e-77 294.3 225 64.4
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.4e-77 293.9 225 62.2
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 2.3e-77 293.1 225 61.8
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 3.0e-77 292.7 225 61.8
Haze_10795 Corylus avellana HOM05D003290 ORTHO05D003866 4.0e-77 292.4 225 62.7
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 4.0e-77 292.4 225 63.1
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 4.0e-77 292.4 225 62.2
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 5.2e-77 292.0 225 61.8
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 6.8e-77 291.6 225 63.6
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 6.8e-77 291.6 225 63.6
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 8.9e-77 291.2 225 61.3
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 8.9e-77 291.2 225 63.6
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 8.9e-77 291.2 225 61.8
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 8.9e-77 291.2 225 63.1
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 1.2e-76 290.8 220 63.6
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 1.2e-76 290.8 225 62.7
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 2.0e-76 290.0 225 63.1
Cpa.g.sc2.68 Carica papaya HOM05D003290 ORTHO05D003866 2.6e-76 289.7 225 61.8
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 2.6e-76 289.7 225 61.8
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 2.6e-76 289.7 225 62.2
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 3.4e-76 289.3 225 60.9
TAR629G0420 Trochodendron aralioides HOM05D003290 ORTHO05D003866 4.4e-76 288.9 225 63.1
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 5.7e-76 288.5 225 61.8
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 5.7e-76 288.5 225 61.8
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 5.7e-76 288.5 225 61.8
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 5.7e-76 288.5 225 61.8
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 1.3e-75 287.3 225 61.3
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 1.3e-75 287.3 225 60.4
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 2.2e-75 286.6 225 61.3
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 2.2e-75 286.6 225 62.7
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 2.9e-75 286.2 225 62.2
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 3.7e-75 285.8 225 60.4
CiPaw.05G159900 Carya illinoinensis HOM05D003290 ORTHO05D003866 4.9e-75 285.4 225 61.8
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 6.4e-75 285.0 225 62.7
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 1.1e-74 284.3 220 60.9
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 4.1e-74 282.3 225 59.1
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 4.1e-74 282.3 225 59.1
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 7.0e-74 281.6 225 63.1
CiPaw.05G160100 Carya illinoinensis HOM05D003290 ORTHO05D003866 9.2e-74 281.2 225 61.3
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 1.2e-73 280.8 225 60.4
Sc03g0005960 Simmondsia chinensis HOM05D003290 ORTHO05D003866 1.2e-73 280.8 225 60.0
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 1.2e-73 280.8 225 59.1
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 2.0e-73 280.0 225 60.4
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 2.0e-73 280.0 225 60.9
DCAR_030317 Daucus carota HOM05D003290 ORTHO05D003866 4.6e-73 278.9 225 62.7
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 4.6e-73 278.9 225 60.4
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 5.9e-73 278.5 225 60.4
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 5.9e-73 278.5 225 60.4
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 2.3e-72 276.6 225 58.2
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 3.0e-72 276.2 225 58.2
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 3.0e-72 276.2 225 61.3
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 3.0e-72 276.2 225 60.9
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 8.6e-72 274.6 225 60.0
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 1.1e-71 274.2 230 57.0
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 1.9e-71 273.5 226 60.2
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 3.3e-71 272.7 225 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 4.3e-71 272.3 225 58.2
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 9.5e-71 271.2 225 57.8
Zm00001eb033240 Zea mays HOM05D003290 ORTHO05D003866 1.6e-70 270.4 225 58.7
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 6.2e-70 268.5 225 57.3
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 8.0e-70 268.1 225 57.8
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 8.0e-70 268.1 225 59.1
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 8.0e-70 268.1 225 56.0
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 1.4e-69 267.3 225 59.1
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 1.4e-69 267.3 225 59.1
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 1.8e-69 266.9 225 59.1
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 4.0e-69 265.8 225 57.3
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 4.0e-69 265.8 222 57.2
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 5.2e-69 265.4 225 56.0
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 6.8e-69 265.0 225 56.9
CARHR144580 Cardamine hirsuta HOM05D003290 ORTHO05D003866 1.2e-68 264.2 193 63.2
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 2.6e-68 263.1 225 57.8
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 3.4e-68 262.7 225 56.0
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 4.9e-67 258.8 225 57.3
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 4.9e-67 258.8 225 56.4
Hma1.2p1_0068F.1_g037320 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 6.4e-67 258.5 224 58.0
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 6.4e-67 258.5 220 56.8
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 1.4e-66 257.3 225 54.2
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 1.9e-66 256.9 225 56.0
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 9.2e-66 254.6 224 58.0
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 1.2e-65 254.2 225 55.6
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 7.8e-65 251.5 230 53.0
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 3.0e-64 249.6 225 55.6
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 8.6e-64 248.1 225 50.7
CAN.G282.93 Capsicum annuum HOM05D003290 ORTHO05D003866 1.1e-61 241.1 202 57.9
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 1.5e-60 237.3 226 52.7
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 7.8e-57 224.9 207 56.5
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 8.4e-51 204.9 157 62.4
Ciclev10015265m.g Citrus clementina HOM05D003290 ORTHO05D003866 3.5e-49 199.5 157 59.9
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 1.3e-48 197.6 176 54.5
Eucgr.B02635 Eucalyptus grandis HOM05D003290 ORTHO05D003866 1.3e-48 197.6 222 44.1
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 4.3e-47 192.6 150 63.3
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 3.5e-41 172.9 222 40.5
Peaxi162Scf00130g01216 Petunia axillaris HOM05D003290 ORTHO05D003866 3.5e-41 172.9 227 38.8
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.5e-39 166.8 218 40.8
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 5.6e-39 165.6 209 41.6
Solyc04g018100.4 Solanum lycopersicum HOM05D003290 ORTHO05D003866 9.0e-37 158.3 222 39.2
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 1.5e-36 157.5 220 38.6
CARHR015150 Cardamine hirsuta HOM05D003290 ORTHO05D003866 7.4e-31 138.7 117 59.8
MD16G1011300 Malus domestica HOM05D003290 ORTHO05D003866 2.8e-30 136.7 102 63.7
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 6.2e-30 135.6 120 57.5
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 5.3e-29 132.5 108 61.1
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.6e-28 130.2 105 60.0
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 7.6e-28 128.6 108 59.3
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 7.6e-28 128.6 108 59.3
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 1.3e-27 127.9 108 57.4
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 1.3e-27 127.9 117 55.6
Sp1g13040 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.2e-27 127.1 107 58.9
A06p10710 Brassica napus HOM05D003290 ORTHO05D003866 4.9e-27 125.9 108 56.5
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 4.9e-27 125.9 108 58.3
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 4.9e-27 125.9 108 56.5
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 1.4e-26 124.4 117 53.8
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 4.6e-25 119.4 104 57.7
MD16G1011400 Malus domestica HOM05D003290 ORTHO05D003866 1.1e-23 114.8 98 58.2
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 1.1e-21 108.2 110 51.8
arahy.Tifrunner.gnm1.ann1.DQT168 Arachis hypogaea HOM05D003290 ORTHO05D003866 3.4e-20 103.2 104 51.9
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 1.0e-19 101.7 108 49.1
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 5.3e-13 79.3 95 41.1


User provided reference genes

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