Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16883 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 2.7e-52 208.4 104 100.0
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 4.5e-15 84.7 86 44.2
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 4.5e-15 84.7 86 44.2
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 5.9e-15 84.3 87 40.2
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 5.9e-15 84.3 86 45.3
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 7.7e-15 84.0 86 45.3
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 1.3e-14 83.2 86 44.2
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 7.2e-13 77.4 86 45.3
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 7.2e-13 77.4 94 42.6
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 7.2e-13 77.4 86 43.0
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 9.4e-13 77.0 90 40.0
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 9.4e-13 77.0 86 44.2
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 1.2e-12 76.6 86 43.0
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.2e-12 76.6 86 43.0
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 1.2e-12 76.6 86 43.0
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 2.1e-12 75.9 86 46.5
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 2.7e-12 75.5 86 43.0
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 3.6e-12 75.1 86 41.9
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 3.6e-12 75.1 86 41.9
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 6.1e-12 74.3 86 41.9
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 6.1e-12 74.3 86 41.9
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 6.1e-12 74.3 86 40.7
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 7.9e-12 73.9 84 40.5
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 7.9e-12 73.9 84 41.7
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 7.9e-12 73.9 84 41.7
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 7.9e-12 73.9 84 41.7
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 7.9e-12 73.9 84 40.5
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 1.0e-11 73.6 86 43.0
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 1.0e-11 73.6 86 40.7
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 1.4e-11 73.2 86 43.0
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 1.4e-11 73.2 86 43.0
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.4e-11 73.2 85 41.2
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 1.4e-11 73.2 86 41.9
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.8e-11 72.8 86 41.9
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 1.8e-11 72.8 86 41.9
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 1.8e-11 72.8 86 40.7
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 1.8e-11 72.8 78 46.2
vmacro19973 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 1.8e-11 72.8 87 41.4
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 2.3e-11 72.4 85 43.5
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 2.3e-11 72.4 86 40.7
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 2.3e-11 72.4 86 40.7
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 2.3e-11 72.4 84 41.7
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 2.3e-11 72.4 84 41.7
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 3.0e-11 72.0 86 40.7
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 3.0e-11 72.0 84 41.7
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 3.0e-11 72.0 84 41.7
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 3.9e-11 71.6 61 50.8
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 3.9e-11 71.6 86 40.7
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 5.1e-11 71.2 86 40.7
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 5.1e-11 71.2 84 40.5
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 5.1e-11 71.2 86 39.5
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 5.1e-11 71.2 86 38.4
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 5.1e-11 71.2 84 40.5
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 6.7e-11 70.9 82 41.5
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 6.7e-11 70.9 78 43.6
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 6.7e-11 70.9 84 36.9
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 6.7e-11 70.9 84 36.9
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 6.7e-11 70.9 86 38.4
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 8.8e-11 70.5 86 38.4
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 8.8e-11 70.5 78 43.6
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 8.8e-11 70.5 86 39.5
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 8.8e-11 70.5 86 41.9
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 1.1e-10 70.1 86 39.5
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 1.1e-10 70.1 86 39.5
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 1.1e-10 70.1 86 38.4
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 1.1e-10 70.1 86 37.2
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 2.5e-10 68.9 84 39.3
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 2.5e-10 68.9 86 40.7
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 3.3e-10 68.6 86 39.5
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 4.3e-10 68.2 86 39.5
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 5.7e-10 67.8 86 40.7
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 5.7e-10 67.8 84 39.3
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 7.4e-10 67.4 86 39.5
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 7.4e-10 67.4 86 39.5
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 7.4e-10 67.4 86 39.5
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 7.4e-10 67.4 86 38.4
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 1.7e-09 66.2 89 38.2
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 2.2e-09 65.9 86 38.4
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 2.2e-09 65.9 86 38.4
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 2.2e-09 65.9 86 38.4
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 2.2e-09 65.9 86 39.5
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.2e-09 65.9 86 39.5
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.2e-09 65.9 86 39.5
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.2e-09 65.9 86 39.5
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.8e-09 65.5 86 39.5
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 3.7e-09 65.1 86 37.2
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 3.7e-09 65.1 86 38.4
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 3.7e-09 65.1 86 36.0
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 6.3e-09 64.3 86 36.0
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 1.4e-08 63.2 86 36.0
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 1.4e-08 63.2 86 38.4
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 2.4e-08 62.4 60 48.3
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 4.1e-08 61.6 86 36.0
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 4.1e-08 61.6 86 38.4
Lj2A47G48 Lonicera japonica HOM05D003193 ORTHO05D004924 9.1e-08 60.5 62 48.4
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 1.2e-07 60.1 86 37.2
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 1.5e-07 59.7 86 33.7
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 1.5e-07 59.7 78 39.7
CSS0034895 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D016156 5.9e-07 57.8 65 44.6
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 5.9e-07 57.8 64 45.3
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 1.7e-06 56.2 64 43.8
unitig_37.g12281 Utricularia gibba HOM05D003193 ORTHO05D004924 2.9e-06 55.5 85 34.1
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 6.5e-06 54.3 60 46.7


User provided reference genes

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