Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.0e-111 406.8 206 100.0
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.2e-82 309.3 228 73.7
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.2e-81 305.4 228 72.8
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.1e-81 304.3 228 72.8
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 1.5e-75 286.6 225 69.3
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 1.5e-75 286.6 227 67.4
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 2.6e-75 285.8 224 68.3
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.6e-75 285.8 224 69.6
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 2.6e-75 285.8 224 67.9
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.6e-75 285.8 224 67.9
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 4.5e-75 285.0 229 68.6
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.6e-75 284.3 224 69.2
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 7.6e-75 284.3 229 67.2
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 7.6e-75 284.3 225 68.9
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 1.0e-74 283.9 223 69.1
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.0e-74 283.9 228 68.0
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 1.0e-74 283.9 223 69.5
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 1.0e-74 283.9 224 67.4
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.8e-74 282.0 224 68.8
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 3.8e-74 282.0 225 68.9
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 5.0e-74 281.6 225 68.9
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 6.5e-74 281.2 228 68.0
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 6.5e-74 281.2 229 66.4
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 6.5e-74 281.2 225 68.4
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 1.1e-73 280.4 225 68.9
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.4e-73 280.0 233 67.0
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 1.4e-73 280.0 224 67.0
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-73 279.6 224 68.8
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.9e-73 279.6 229 66.8
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.9e-73 279.6 233 67.0
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.9e-73 279.6 233 67.0
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 3.2e-73 278.9 224 67.9
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 3.2e-73 278.9 227 67.0
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 3.2e-73 278.9 224 67.0
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 4.2e-73 278.5 229 65.5
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 5.5e-73 278.1 224 65.6
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 7.2e-73 277.7 224 67.0
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 7.2e-73 277.7 224 68.3
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 7.2e-73 277.7 224 67.9
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 9.3e-73 277.3 224 66.5
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 9.3e-73 277.3 233 67.0
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 9.3e-73 277.3 230 65.7
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 9.3e-73 277.3 229 65.9
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 1.2e-72 276.9 227 66.1
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 1.2e-72 276.9 225 68.0
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 1.6e-72 276.6 232 65.5
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 2.1e-72 276.2 223 66.4
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 2.1e-72 276.2 224 67.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 2.7e-72 275.8 230 67.0
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 2.7e-72 275.8 226 65.9
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 3.6e-72 275.4 232 66.4
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 3.6e-72 275.4 225 68.0
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 4.6e-72 275.0 226 66.4
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 6.1e-72 274.6 224 65.2
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 6.1e-72 274.6 227 65.6
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 1.0e-71 273.9 231 66.2
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.3e-71 273.5 227 65.2
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.3e-71 273.5 228 64.9
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.8e-71 273.1 226 64.2
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.8e-71 273.1 251 62.2
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.3e-71 272.7 224 65.2
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 3.0e-71 272.3 215 69.3
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 3.9e-71 271.9 225 65.8
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 5.1e-71 271.6 230 65.2
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 6.7e-71 271.2 224 67.0
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.5e-70 270.0 224 65.2
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.9e-70 269.6 224 64.7
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 3.3e-70 268.9 225 65.3
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 5.7e-70 268.1 224 63.8
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 5.7e-70 268.1 198 71.7
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 9.7e-70 267.3 230 64.3
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 1.3e-69 266.9 224 64.7
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 1.6e-69 266.5 226 64.6
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 2.2e-69 266.2 224 64.7
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 2.2e-69 266.2 224 65.6
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 2.2e-69 266.2 224 65.6
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 2.2e-69 266.2 224 64.3
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 2.8e-69 265.8 224 63.8
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 2.8e-69 265.8 225 62.7
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 8.2e-69 264.2 224 64.3
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 8.2e-69 264.2 224 64.3
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 8.2e-69 264.2 224 64.3
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 8.2e-69 264.2 224 64.3
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 1.1e-68 263.8 224 63.8
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.8e-68 263.1 223 63.7
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 1.8e-68 263.1 223 63.7
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.8e-68 263.1 223 63.7
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.8e-68 263.1 223 63.7
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 1.8e-68 263.1 223 63.7
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 5.3e-68 261.5 224 62.1
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 6.9e-68 261.2 196 69.9
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 9.1e-68 260.8 224 64.3
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.0e-67 259.6 229 62.9
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.0e-67 259.6 229 62.9
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.0e-67 259.6 229 62.9
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 4.5e-67 258.5 210 68.6
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 4.5e-67 258.5 210 68.6
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 5.9e-67 258.1 221 64.7
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 5.9e-67 258.1 231 61.9
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.2e-66 256.1 218 66.1
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.8e-66 255.4 218 65.1
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 6.5e-66 254.6 226 61.5
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.1e-65 253.8 228 59.6
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.4e-65 250.8 251 59.0
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 7.9e-64 247.7 218 62.4
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.8e-63 246.5 251 58.2
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 3.9e-63 245.4 212 65.1
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 1.3e-58 230.3 199 65.3
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 3.8e-58 228.8 196 65.8
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 5.0e-58 228.4 203 63.5
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 3.6e-56 222.2 217 59.0
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 3.9e-55 218.8 224 58.5
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 4.4e-54 215.3 228 57.0
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.4e-52 210.3 220 57.3
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.6e-51 206.1 171 66.7
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.2e-50 203.0 247 51.4
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.9e-50 202.6 201 57.7
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.0e-47 194.1 123 77.2
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 1.0e-47 194.1 213 50.2
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 4.1e-44 182.2 175 58.3
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.0e-43 179.9 211 52.1
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 4.4e-38 162.2 199 45.2
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 4.8e-37 158.7 206 43.7
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.3e-37 158.3 203 44.3
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.1e-36 156.0 195 50.8
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 9.1e-36 154.5 201 40.3
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.9e-34 149.4 203 41.4
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.9e-33 146.7 206 40.3
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.5e-33 145.2 204 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.3e-29 134.0 191 40.3
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 9.8e-22 107.8 145 44.8
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.1e-20 104.4 60 93.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 6.0e-19 98.6 63 71.4
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.3e-18 97.4 92 53.3
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.1e-17 94.4 60 81.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.5e-17 93.2 59 72.9
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 9.5e-17 91.3 51 90.2
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.0e-12 75.1 62 72.6
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 7.8e-11 71.6 55 63.6
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.0e-06 57.0 33 81.8


User provided reference genes

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