Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.8e-93 344.0 173 100.0
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 3.1e-53 212.2 172 61.0
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 3.1e-53 212.2 170 60.6
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 5.3e-53 211.5 170 60.6
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 5.3e-53 211.5 170 60.6
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 9.0e-53 210.7 171 59.6
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 3.4e-52 208.8 170 62.4
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 7.6e-52 207.6 170 60.0
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.7e-51 206.5 170 60.0
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 2.2e-51 206.1 178 58.4
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 3.8e-51 205.3 170 58.2
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 3.8e-51 205.3 173 58.4
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 6.5e-51 204.5 171 61.4
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.1e-50 203.8 171 59.1
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.4e-50 203.4 170 60.6
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.4e-50 203.4 171 59.1
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.4e-50 203.4 172 59.3
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.4e-50 203.4 170 59.4
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.9e-50 203.0 178 57.9
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 2.5e-50 202.6 170 60.6
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 3.2e-50 202.2 170 58.2
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 4.2e-50 201.8 169 59.2
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 4.2e-50 201.8 171 57.9
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 5.5e-50 201.4 171 57.9
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 7.1e-50 201.1 170 59.4
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 7.1e-50 201.1 179 55.9
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.2e-49 200.3 170 57.6
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.2e-49 200.3 170 58.8
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.2e-49 200.3 171 59.1
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.6e-49 199.9 170 58.8
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 2.1e-49 199.5 172 59.9
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 2.7e-49 199.1 172 58.7
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.7e-49 199.1 170 55.9
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 2.7e-49 199.1 171 59.1
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 3.5e-49 198.7 170 58.2
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.6e-49 198.4 170 57.6
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.6e-49 198.4 170 57.6
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 4.6e-49 198.4 173 58.4
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 6.1e-49 198.0 170 56.5
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 7.9e-49 197.6 171 57.9
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.0e-48 197.2 171 56.7
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.0e-48 197.2 171 56.7
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.3e-48 196.8 170 56.5
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.3e-48 196.8 171 57.9
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.3e-48 196.8 170 57.1
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.8e-48 196.4 170 58.2
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.8e-48 196.4 170 58.2
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.8e-48 196.4 172 57.6
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.3e-48 196.1 171 56.7
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 2.3e-48 196.1 171 57.3
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.0e-48 195.7 170 58.2
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 5.1e-48 194.9 170 57.1
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 5.1e-48 194.9 170 57.1
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 8.7e-48 194.1 180 54.4
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 8.7e-48 194.1 171 57.9
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.1e-47 193.7 170 55.3
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.1e-47 193.7 171 57.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.1e-47 193.7 170 57.6
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 1.1e-47 193.7 170 57.1
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 1.9e-47 193.0 170 56.5
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.9e-47 193.0 170 54.7
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 1.9e-47 193.0 174 59.2
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 3.3e-47 192.2 187 52.9
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 3.3e-47 192.2 169 54.4
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 3.3e-47 192.2 170 57.1
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 3.3e-47 192.2 171 56.7
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 7.4e-47 191.0 175 55.4
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 7.4e-47 191.0 173 57.2
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 9.7e-47 190.7 171 56.1
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.3e-46 190.3 172 55.8
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.6e-46 189.9 172 57.6
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 2.8e-46 189.1 175 54.9
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.8e-46 189.1 189 50.8
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 3.7e-46 188.7 177 54.2
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 4.8e-46 188.3 169 55.6
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 4.8e-46 188.3 170 56.5
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 4.8e-46 188.3 171 56.1
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.8e-46 188.3 169 52.7
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.8e-46 188.3 174 53.4
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 6.3e-46 188.0 172 54.7
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 6.3e-46 188.0 169 53.3
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 6.3e-46 188.0 169 53.3
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 8.2e-46 187.6 175 54.9
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 8.2e-46 187.6 173 55.5
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-45 187.2 170 57.6
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.1e-45 187.2 170 57.6
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 1.1e-45 187.2 171 54.4
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.1e-45 187.2 174 53.4
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.1e-45 187.2 174 54.0
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.1e-45 187.2 174 54.0
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 1.1e-45 187.2 174 58.6
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.1e-45 187.2 170 54.7
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.1e-45 187.2 169 53.3
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.4e-45 186.8 171 56.1
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.8e-45 186.4 174 56.3
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.8e-45 186.4 171 56.7
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.8e-45 186.4 169 52.7
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 3.1e-45 185.7 170 57.1
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 3.1e-45 185.7 170 57.1
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 3.1e-45 185.7 170 57.1
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 5.3e-45 184.9 175 53.7
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 5.3e-45 184.9 173 54.9
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 5.3e-45 184.9 171 55.6
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 5.3e-45 184.9 170 54.1
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 6.9e-45 184.5 173 54.9
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 6.9e-45 184.5 175 53.1
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 6.9e-45 184.5 175 53.1
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.2e-44 183.7 171 55.6
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.2e-44 183.7 173 54.3
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.2e-44 183.7 169 52.1
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.0e-44 183.0 170 55.3
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 2.0e-44 183.0 174 53.4
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.0e-44 183.0 170 52.4
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 3.4e-44 182.2 169 52.1
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 4.5e-44 181.8 169 52.1
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 5.9e-44 181.4 177 53.7
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 5.9e-44 181.4 169 52.1
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.3e-43 180.3 166 55.4
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 3.8e-43 178.7 169 52.1
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 5.0e-43 178.3 181 51.9
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 5.0e-43 178.3 183 51.4
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-42 177.2 177 52.5
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.1e-42 177.2 169 50.9
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.4e-42 176.8 179 50.3
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.2e-42 175.6 169 52.1
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 5.5e-42 174.9 189 50.3
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.2e-41 173.7 171 52.0
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.2e-41 173.7 170 50.6
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 2.1e-41 172.9 171 54.4
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 7.9e-41 171.0 173 51.4
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.0e-40 170.6 190 49.5
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.0e-40 170.6 170 51.2
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.3e-40 169.5 142 56.3
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 5.7e-39 164.9 170 48.2
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.8e-37 159.8 129 60.5
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 2.4e-37 159.5 242 39.3
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 9.1e-37 157.5 170 47.6
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.0e-36 156.4 121 60.3
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 2.6e-36 156.0 172 45.3
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 5.9e-36 154.8 155 49.7
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 5.9e-36 154.8 193 45.1
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 7.2e-34 147.9 132 54.5
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.8e-32 143.3 136 52.9
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 5.7e-31 138.3 147 49.0
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 9.7e-31 137.5 180 43.9
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 9.1e-29 131.0 112 56.2
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 5.5e-26 121.7 154 47.4
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 1.4e-21 107.1 207 36.2
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 3.1e-21 105.9 78 59.0
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.5e-18 97.1 177 34.5
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 7.2e-18 94.7 76 57.9
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 2.0e-15 86.7 150 36.0
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 4.8e-14 82.0 151 31.8
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 3.5e-12 75.9 105 43.8
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 8.5e-11 71.2 63 50.8
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 6.8e-08 61.6 43 65.1
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 5.7e-07 58.5 49 53.1
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 7.5e-07 58.2 46 54.3
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 4.9e-06 55.5 48 54.2


User provided reference genes

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