Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16832 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 2.2e-51 205.3 101 100.0
SEGI_03447 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 2.1e-17 92.4 50 94.0
SEGI_07779 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 2.1e-17 92.4 52 92.3
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 2.1e-17 92.4 53 88.7
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.1e-17 92.4 63 79.4
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.7e-17 92.0 63 79.4
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.6e-17 91.7 63 79.4
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.6e-17 91.7 63 79.4
SEGI_07166 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 2.0e-15 85.9 50 90.0
SEGI_13281 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 2.0e-15 85.9 50 78.0
SEGI_18923 Sequoiadendron giganteum HOM05D000428 ORTHO05D015400 4.8e-14 81.3 49 75.5
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 8.2e-14 80.5 51 74.5
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 1.1e-13 80.1 53 71.7
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 1.1e-13 80.1 53 75.5
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 1.4e-13 79.7 53 73.6
Cpa.g.sc1.236 Carica papaya HOM05D000832 ORTHO05D000982 1.8e-13 79.3 53 73.6
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 1.8e-13 79.3 53 73.6
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 1.8e-13 79.3 52 75.0
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 1.8e-13 79.3 45 80.0
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 3.1e-13 78.6 53 71.7
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 3.1e-13 78.6 53 71.7
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 4.1e-13 78.2 53 71.7
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 4.1e-13 78.2 53 71.7
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 4.1e-13 78.2 53 73.6
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 5.3e-13 77.8 53 71.7
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 5.3e-13 77.8 53 71.7
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 5.3e-13 77.8 53 71.7
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 5.3e-13 77.8 53 71.7
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 5.3e-13 77.8 53 71.7
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 5.3e-13 77.8 55 69.1
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 5.3e-13 77.8 53 73.6
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 5.3e-13 77.8 55 69.1
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 7.0e-13 77.4 53 71.7
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 7.0e-13 77.4 55 69.1
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 7.0e-13 77.4 53 71.7
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 7.0e-13 77.4 53 71.7
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 7.0e-13 77.4 53 71.7
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 71.7
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 69.8
BcaC05g26647 Brassica carinata HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 69.8
BcaNung06368 Brassica carinata HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 69.8
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 69.8
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 69.8
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 69.8
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 69.8
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 71.7
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 71.7
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 67.9
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 71.7
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 9.1e-13 77.0 53 69.8
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 1.2e-12 76.6 53 69.8
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 1.2e-12 76.6 53 69.8
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 1.2e-12 76.6 53 71.7
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 1.6e-12 76.3 53 69.8
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 1.6e-12 76.3 53 71.7
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 1.6e-12 76.3 53 71.7
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 1.6e-12 76.3 53 71.7
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 2.0e-12 75.9 53 69.8
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 2.0e-12 75.9 53 69.8
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 2.0e-12 75.9 53 69.8
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 2.0e-12 75.9 53 69.8
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 2.0e-12 75.9 53 69.8
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 2.6e-12 75.5 53 69.8
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 2.6e-12 75.5 55 67.3
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 2.6e-12 75.5 55 67.3
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 2.6e-12 75.5 53 69.8
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 2.6e-12 75.5 53 69.8
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 2.6e-12 75.5 53 69.8
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 2.6e-12 75.5 53 69.8
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 3.5e-12 75.1 53 69.8
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 4.5e-12 74.7 53 69.8
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 4.5e-12 74.7 53 69.8
arahy.Tifrunner.gnm1.ann1.7GR9X4 Arachis hypogaea HOM05D000832 ORTHO05D013013 4.5e-12 74.7 53 69.8
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 4.5e-12 74.7 53 71.7
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 5.9e-12 74.3 53 69.8
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 5.9e-12 74.3 53 69.8
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 5.9e-12 74.3 53 69.8
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 5.9e-12 74.3 53 67.9
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 5.9e-12 74.3 53 71.7
SMO146G0010 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 5.9e-12 74.3 53 69.8
SEGI_26630 Sequoiadendron giganteum HOM05D001017 ORTHO05D001025 5.9e-12 74.3 41 82.9
SEGI_38688 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 5.9e-12 74.3 40 82.5
SEGI_39357 Sequoiadendron giganteum HOM05D003144 ORTHO05D003539 5.9e-12 74.3 64 60.9
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 7.7e-12 73.9 53 66.0
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 7.7e-12 73.9 55 65.5
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 1.3e-11 73.2 53 67.9
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 1.3e-11 73.2 53 67.9
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 1.3e-11 73.2 49 69.4
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 1.7e-11 72.8 53 66.0
Glyma.02G118228 Glycine max HOM05D000832 ORTHO05D013013 1.7e-11 72.8 62 61.3
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 1.7e-11 72.8 53 67.9
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 1.7e-11 72.8 53 67.9
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 1.7e-11 72.8 53 64.2
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 2.2e-11 72.4 52 71.2
Glyma.02G118180 Glycine max HOM05D000832 ORTHO05D013013 2.2e-11 72.4 53 66.0
Glyma.02G130896 Glycine max HOM05D000832 ORTHO05D013013 2.2e-11 72.4 53 66.0
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 2.2e-11 72.4 53 64.2
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 2.2e-11 72.4 53 67.9
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 2.2e-11 72.4 52 71.2
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 2.2e-11 72.4 52 71.2
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 2.2e-11 72.4 53 66.0
AagrBONN_evm.TU.Sc2ySwM_344.1213 Anthoceros agrestis HOM05D000832 ORTHO05D000982 2.9e-11 72.0 53 66.0
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 2.9e-11 72.0 53 64.2
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 2.9e-11 72.0 53 64.2
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 2.9e-11 72.0 53 67.9
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 2.9e-11 72.0 53 66.0
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 3.8e-11 71.6 53 64.2
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 3.8e-11 71.6 53 66.0
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 3.8e-11 71.6 53 67.9
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 3.8e-11 71.6 53 66.0
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 5.0e-11 71.2 53 67.9
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 5.0e-11 71.2 53 66.0
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 5.0e-11 71.2 52 67.3
SEGI_10799 Sequoiadendron giganteum HOM05D000423 ORTHO05D000284 5.0e-11 71.2 41 78.0
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 5.0e-11 71.2 53 67.9
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 5.0e-11 71.2 52 69.2
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 5.0e-11 71.2 52 69.2
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 6.5e-11 70.9 53 67.9
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 6.5e-11 70.9 52 67.3
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 8.5e-11 70.5 53 66.0
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 1.1e-10 70.1 53 66.0
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.5e-10 69.7 53 66.0
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 1.9e-10 69.3 53 62.3
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 1.9e-10 69.3 53 66.0
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 2.5e-10 68.9 53 64.2
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 2.5e-10 68.9 53 66.0
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 2.5e-10 68.9 53 64.2
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 2.5e-10 68.9 53 66.0
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 3.2e-10 68.6 53 64.2
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 3.2e-10 68.6 48 70.8
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 9.4e-10 67.0 53 60.4
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 9.4e-10 67.0 53 60.4
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 1.2e-09 66.6 48 68.8
SEGI_08791 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 1.2e-09 66.6 38 89.5
SEGI_32990 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 1.6e-09 66.2 40 75.0
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 2.1e-09 65.9 53 64.2
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 2.1e-09 65.9 53 60.4
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 2.1e-09 65.9 53 66.0
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 2.1e-09 65.9 53 60.4
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 2.7e-09 65.5 50 66.0
CBR_g51455 Chara braunii HOM05D011303 ORTHO05D012435 3.6e-09 65.1 48 64.6
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 6.1e-09 64.3 53 62.3
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 8.0e-09 63.9 53 60.4
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 1.4e-08 63.2 48 62.5
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 1.4e-08 63.2 48 62.5
unitig_27.g25235 Utricularia gibba HOM05D000832 ORTHO05D000982 1.4e-08 63.2 48 60.4
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 1.8e-08 62.8 53 60.4
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 4.0e-08 61.6 53 54.7
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 4.0e-08 61.6 53 54.7
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 4.0e-08 61.6 53 54.7
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 4.0e-08 61.6 53 54.7
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 4.0e-08 61.6 53 54.7
SEGI_00748 Sequoiadendron giganteum HOM05D000622 ORTHO05D000475 5.2e-08 61.2 57 57.9
SEGI_27904 Sequoiadendron giganteum HOM05D000071 ORTHO05D000029 5.2e-08 61.2 42 69.0
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 1.1e-07 60.1 40 72.5
SEGI_22870 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 1.1e-07 60.1 40 72.5
SEGI_08747 Sequoiadendron giganteum HOM05D000573 ORTHO05D000425 1.5e-07 59.7 40 72.5
SEGI_13157 Sequoiadendron giganteum HOM05D000038 ORTHO05D000689 1.5e-07 59.7 45 64.4
SEGI_07037 Sequoiadendron giganteum HOM05D000059 ORTHO05D001838 2.0e-07 59.3 42 71.4
SEGI_39599 Sequoiadendron giganteum HOM05D000070 ORTHO05D000722 2.0e-07 59.3 40 72.5
SEGI_00749 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.3e-07 58.5 42 69.0
SEGI_39847 Sequoiadendron giganteum HOM05D000094 ORTHO05D383741 7.5e-07 57.4 42 66.7
SEGI_09160 Sequoiadendron giganteum HOM05D001582 ORTHO05D011374 1.3e-06 56.6 42 64.3
SEGI_28531 Sequoiadendron giganteum HOM05D000038 ORTHO05D015287 1.3e-06 56.6 40 70.0
SEGI_19895 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 1.7e-06 56.2 40 70.0
SEGI_36222 Sequoiadendron giganteum HOM05D000077 ORTHO05D015307 2.2e-06 55.8 47 59.6


User provided reference genes

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