Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16824 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 1.6e-140 502.7 242 100.0
SEGI_19056 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 4.5e-74 282.0 138 100.0
MBI02_g21206_MAGBIO Magnolia biondii HOM05D003475 ORTHO05D004155 4.6e-71 271.9 210 62.4
Solyc04g049630.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 1.1e-69 267.3 208 61.1
Sopen04g019770 Solanum pennellii HOM05D003475 ORTHO05D004155 1.5e-69 266.9 208 61.1
Sc02g0006850 Simmondsia chinensis HOM05D003475 ORTHO05D004155 3.3e-69 265.8 207 62.8
MD08G1107200 Malus domestica HOM05D003475 ORTHO05D004155 4.3e-69 265.4 208 62.5
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 4.3e-69 265.4 208 62.0
Nitab4.5_0004930g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 1.6e-68 263.5 208 59.1
MD15G1087800 Malus domestica HOM05D003475 ORTHO05D004155 2.1e-68 263.1 208 62.0
Thecc.08G013900 Theobroma cacao HOM05D003475 ORTHO05D004155 2.1e-68 263.1 208 62.0
Gohir.D06G014300 Gossypium hirsutum HOM05D003475 ORTHO05D004155 8.1e-68 261.2 208 62.0
Gorai.010G016900 Gossypium raimondii HOM05D003475 ORTHO05D004155 8.1e-68 261.2 208 62.0
Prupe.1G441500 Prunus persica HOM05D003475 ORTHO05D004155 8.1e-68 261.2 208 62.5
Dinv42129 Davidia involucrata HOM05D003475 ORTHO05D004155 1.4e-67 260.4 208 59.1
Sabra02G0100800 Salix brachista HOM05D003475 ORTHO05D004155 1.4e-67 260.4 208 61.5
COL.COLO4_26452 Corchorus olitorius HOM05D003475 ORTHO05D004155 1.8e-67 260.0 208 61.1
QL02p006064 Quercus lobata HOM05D003475 ORTHO05D004155 1.8e-67 260.0 208 61.1
Duzib116G0360 Durio zibethinus HOM05D003475 ORTHO05D004155 3.1e-67 259.2 208 60.1
TPR.G16593 Trifolium pratense HOM05D003475 ORTHO05D004155 3.1e-67 259.2 209 59.8
EL10Ac1g01808 Beta vulgaris HOM05D003475 ORTHO05D004155 5.3e-67 258.5 208 59.6
Lj9A359T75 Lonicera japonica HOM05D003475 ORTHO05D004155 6.9e-67 258.1 207 59.4
TWI56G0590 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 9.0e-67 257.7 207 61.4
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 1.2e-66 257.3 208 58.2
Ca_05516_v3 Cicer arietinum L. HOM05D003475 ORTHO05D004155 1.2e-66 257.3 209 58.9
Gohir.A06G016100 Gossypium hirsutum HOM05D003475 ORTHO05D004155 1.2e-66 257.3 208 61.5
Potri.002G128700 Populus trichocarpa HOM05D003475 ORTHO05D004155 1.2e-66 257.3 208 60.6
FAN20G0705 Fragaria x ananassa HOM05D003475 ORTHO05D004155 2.6e-66 256.1 208 60.1
RcHm_v2.0_Chr6g0307051 Rosa chinensis HOM05D003475 ORTHO05D004155 4.5e-66 255.4 208 59.6
Phvul.006G042600 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 5.8e-66 255.0 209 58.9
GSVIVG01009564001 Vitis vinifera HOM05D003475 ORTHO05D004155 7.6e-66 254.6 208 59.6
FvH4_2g34950 Fragaria vesca HOM05D003475 ORTHO05D004155 1.0e-65 254.2 208 59.6
FAN27G1383 Fragaria x ananassa HOM05D003475 ORTHO05D004155 1.3e-65 253.8 209 59.3
THA.LOC104821889 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 1.7e-65 253.4 209 59.3
Lj4C50T5 Lonicera japonica HOM05D003475 ORTHO05D004155 2.2e-65 253.1 208 58.2
Manes.18G034500 Manihot esculenta HOM05D003475 ORTHO05D004155 2.2e-65 253.1 208 61.1
Ciclev10003676m.g Citrus clementina HOM05D003475 ORTHO05D004155 2.9e-65 252.7 208 59.1
Glyma.08G315400 Glycine max HOM05D003475 ORTHO05D004155 2.9e-65 252.7 209 57.4
Ah.11g043410 Amaranthus hybridus HOM05D003475 ORTHO05D004155 3.8e-65 252.3 208 58.7
CiPaw.15G063700 Carya illinoinensis HOM05D003475 ORTHO05D004155 3.8e-65 252.3 208 59.6
Psat5g180320 Pisum sativum HOM05D003475 ORTHO05D004155 3.8e-65 252.3 209 58.9
TAR381G1600 Trochodendron aralioides HOM05D003475 ORTHO05D004155 3.8e-65 252.3 207 60.4
Eucgr.L02208 Eucalyptus grandis HOM05D003475 ORTHO05D004155 8.4e-65 251.1 208 59.1
CsaV3_4G034080 Cucumis sativus L. HOM05D003475 ORTHO05D004155 1.1e-64 250.8 207 58.9
SGA_v2.0_scaffold217G42435 Striga asiatica HOM05D003475 ORTHO05D004155 1.1e-64 250.8 208 58.7
CSS0021204 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 1.4e-64 250.4 208 57.2
PGR083G1228 Punica granatum HOM05D003475 ORTHO05D004155 1.4e-64 250.4 208 56.2
Solyc10g050840.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 1.4e-64 250.4 208 57.7
Cpa.g.c26337.1 Carica papaya HOM05D003475 ORTHO05D004155 1.9e-64 250.0 208 58.2
Medtr3g051310 Medicago truncatula HOM05D003475 ORTHO05D004155 1.9e-64 250.0 209 59.3
CSS0002070 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 2.5e-64 249.6 208 57.2
Actinidia27942 Actinidia chinensis HOM05D003475 ORTHO05D004155 4.2e-64 248.8 208 56.2
MSTRG.25109 Avicennia marina HOM05D003475 ORTHO05D004155 4.2e-64 248.8 208 60.6
A08p00170 Brassica napus HOM05D003475 ORTHO05D004155 4.2e-64 248.8 208 59.1
BraA08t32073Z Brassica rapa HOM05D003475 ORTHO05D004155 4.2e-64 248.8 208 59.1
Eucgr.F00026 Eucalyptus grandis HOM05D003475 ORTHO05D004155 4.2e-64 248.8 208 59.6
CAN.G57.16 Capsicum annuum HOM05D003475 ORTHO05D004155 5.5e-64 248.4 243 52.3
ECA248G1217 Erigeron canadensis HOM05D003475 ORTHO05D004155 5.5e-64 248.4 208 59.1
HanXRQChr11g0349621 Helianthus annuus HOM05D003475 ORTHO05D004155 5.5e-64 248.4 208 59.6
PGSC0003DMG400008244 Solanum tuberosum HOM05D003475 ORTHO05D004155 5.5e-64 248.4 208 57.2
C03p93340 Brassica napus HOM05D003475 ORTHO05D004155 7.1e-64 248.1 208 58.7
BolC3t21632H Brassica oleracea HOM05D003475 ORTHO05D004155 7.1e-64 248.1 208 58.7
PSO541G5638 Papaver somniferum HOM05D003475 ORTHO05D004155 7.1e-64 248.1 208 58.7
PSO675G3178 Papaver somniferum HOM05D003475 ORTHO05D004155 7.1e-64 248.1 208 58.7
GSVIVG01009565001 Vitis vinifera HOM05D003475 ORTHO05D004155 7.1e-64 248.1 208 58.2
AUR62040061 Chenopodium quinoa HOM05D003475 ORTHO05D004155 9.3e-64 247.7 208 58.7
Lj6g0027326 Lotus japonicus HOM05D003475 ORTHO05D004155 9.3e-64 247.7 209 59.3
Nitab4.5_0000876g0160 Nicotiana tabacum HOM05D003475 ORTHO05D004155 9.3e-64 247.7 208 57.2
PSO675G3306 Papaver somniferum HOM05D003475 ORTHO05D004155 9.3e-64 247.7 208 58.7
Sopen10g022400 Solanum pennellii HOM05D003475 ORTHO05D004155 9.3e-64 247.7 208 57.2
FAN15G0079 Fragaria x ananassa HOM05D003475 ORTHO05D004155 1.2e-63 247.3 208 59.1
Atru.chr13.624 Acer truncatum HOM05D003475 ORTHO05D004155 1.6e-63 246.9 203 60.1
Nn5g30184 Nelumbo nucifera HOM05D003475 ORTHO05D004155 1.6e-63 246.9 208 57.2
Hund26615 Selenicereus undatus HOM05D003475 ORTHO05D004155 1.6e-63 246.9 209 57.4
Nitab4.5_0002673g0070 Nicotiana tabacum HOM05D003475 ORTHO05D004155 2.1e-63 246.5 208 56.7
Aa31LG9G17910 Aethionema arabicum HOM05D003475 ORTHO05D004155 2.7e-63 246.1 207 57.5
AT5G36210 Arabidopsis thaliana HOM05D003475 ORTHO05D004155 2.7e-63 246.1 233 52.4
DCAR_008786 Daucus carota HOM05D003475 ORTHO05D004155 2.7e-63 246.1 208 58.2
Hma1.2p1_1543F.1_g289760 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 2.7e-63 246.1 208 56.2
Sed0005929 Sechium edule HOM05D003475 ORTHO05D004155 2.7e-63 246.1 207 57.5
CARHR216560 Cardamine hirsuta HOM05D003475 ORTHO05D004155 3.5e-63 245.7 208 57.2
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 3.5e-63 245.7 207 58.9
Eucgr.F00027 Eucalyptus grandis HOM05D003475 ORTHO05D004155 4.6e-63 245.4 208 59.1
Thhalv10003712m.g Eutrema salsugineum HOM05D003475 ORTHO05D004155 4.6e-63 245.4 208 57.7
Lalb_Chr18g0049301 Lupinus albus HOM05D003475 ORTHO05D004155 6.0e-63 245.0 209 56.5
AL7G45140 Arabidopsis lyrata HOM05D003475 ORTHO05D004155 7.9e-63 244.6 208 57.2
arahy.Tifrunner.gnm1.ann1.HN34MD Arachis hypogaea HOM05D003475 ORTHO05D004155 7.9e-63 244.6 212 56.1
Migut.C00608 Erythranthe guttata HOM05D003475 ORTHO05D004155 7.9e-63 244.6 208 59.1
Carub.0007s3188 Capsella rubella HOM05D003475 ORTHO05D004155 1.0e-62 244.2 208 56.7
FvH4_2g34941 Fragaria vesca HOM05D003475 ORTHO05D004155 1.0e-62 244.2 207 58.9
Os06g0215300 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 1.0e-62 244.2 208 57.7
PSO675G9051 Papaver somniferum HOM05D003475 ORTHO05D004155 1.0e-62 244.2 208 57.2
VMungo0540G2323 Vigna mungo HOM05D003475 ORTHO05D004155 1.0e-62 244.2 209 57.9
MELO3C016731.2 Cucumis melo HOM05D003475 ORTHO05D004155 1.3e-62 243.8 207 57.0
TWI56G1470 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 1.3e-62 243.8 208 58.2
ECA233G1971 Erigeron canadensis HOM05D003475 ORTHO05D004155 1.8e-62 243.4 233 52.4
Lsat_1_v5_gn_1_54780 Lactuca sativa HOM05D003475 ORTHO05D004155 2.3e-62 243.0 208 57.2
Aqoxy6G01418 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 3.0e-62 242.7 211 56.9
Hma1.2p1_0260F.1_g104710 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 3.0e-62 242.7 208 57.2
SalBow7G2172 Salvia bowleyana HOM05D003475 ORTHO05D004155 3.9e-62 242.3 208 56.7
ClCG05G019590 Citrullus lanatus HOM05D003475 ORTHO05D004155 5.1e-62 241.9 226 53.5
FAN27G2115 Fragaria x ananassa HOM05D003475 ORTHO05D004155 5.1e-62 241.9 207 58.5
Glyma.18G098400 Glycine max HOM05D003475 ORTHO05D004155 6.7e-62 241.5 208 54.8
Sp7g05960 Schrenkiella parvula HOM05D003475 ORTHO05D004155 8.7e-62 241.1 208 56.7
CANSAT25G2609 Cannabis sativa HOM05D003475 ORTHO05D004155 1.9e-61 240.0 208 58.2
DCAR_003620 Daucus carota HOM05D003475 ORTHO05D004155 1.9e-61 240.0 203 57.6
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 2.5e-61 239.6 233 51.5
VMungo0540G0248 Vigna mungo HOM05D003475 ORTHO05D004155 2.5e-61 239.6 208 56.2
arahy.Tifrunner.gnm1.ann1.VT20D2 Arachis hypogaea HOM05D003475 ORTHO05D004155 3.3e-61 239.2 209 56.9
arahy.Tifrunner.gnm1.ann1.W6GX7N Arachis hypogaea HOM05D003475 ORTHO05D004155 3.3e-61 239.2 209 56.9
Aqoxy6G01420 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 5.7e-61 238.4 208 56.7
FAN15G1851 Fragaria x ananassa HOM05D003475 ORTHO05D004155 9.6e-61 237.7 209 56.9
Eucgr.F00028 Eucalyptus grandis HOM05D003475 ORTHO05D004155 1.3e-60 237.3 208 57.2
Lsat_1_v5_gn_6_33061 Lactuca sativa HOM05D003475 ORTHO05D004155 1.3e-60 237.3 208 56.2
Peaxi162Scf00003g01723 Petunia axillaris HOM05D003475 ORTHO05D004155 1.3e-60 237.3 207 56.0
Peaxi162Scf00929g00519 Petunia axillaris HOM05D003475 ORTHO05D004155 1.3e-60 237.3 236 50.4
Phvul.006G042700 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 1.3e-60 237.3 208 56.2
CDE06G0513 Ceratophyllum demersum HOM05D003475 ORTHO05D004155 2.1e-60 236.5 208 56.2
vmacro21559 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 2.1e-60 236.5 210 55.7
Zm00001eb373080 Zea mays HOM05D003475 ORTHO05D004155 2.1e-60 236.5 208 55.8
CSS0007643 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 4.8e-60 235.3 208 57.2
Actinidia15262 Actinidia chinensis HOM05D003475 ORTHO05D004155 6.2e-60 235.0 208 55.8
arahy.Tifrunner.gnm1.ann1.DEGU9R Arachis hypogaea HOM05D003475 ORTHO05D004155 8.2e-60 234.6 216 52.8
MELO3C016729.2 Cucumis melo HOM05D003475 ORTHO05D004155 2.4e-59 233.0 207 55.1
Os06g0215400 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 4.1e-59 232.3 233 50.2
SHI08311 Sapria himalayana HOM05D003475 ORTHO05D004155 6.9e-59 231.5 208 54.3
Cc10_g03890 Coffea canephora HOM05D003475 ORTHO05D004155 9.0e-59 231.1 208 54.3
Haze_17571 Corylus avellana HOM05D003475 ORTHO05D004155 9.0e-59 231.1 212 54.7
CsaV3_4G034070 Cucumis sativus L. HOM05D003475 ORTHO05D004155 1.2e-58 230.7 207 54.6
Sed0014453 Sechium edule HOM05D003475 ORTHO05D004155 1.5e-58 230.3 207 55.6
THA.LOC104823807 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 3.4e-58 229.2 208 54.8
Cfa018505 Carpinus fangiana HOM05D003475 ORTHO05D004155 4.5e-58 228.8 208 54.8
FAN20G3001 Fragaria x ananassa HOM05D003475 ORTHO05D004155 7.6e-58 228.0 238 51.3
Cc10_g03900 Coffea canephora HOM05D003475 ORTHO05D004155 1.7e-57 226.9 207 55.1
Rhsim06G0046300 Rhododendron simsii HOM05D003475 ORTHO05D004155 2.9e-57 226.1 237 51.9
CAN.G1288.14 Capsicum annuum HOM05D003475 ORTHO05D004155 7.4e-53 211.5 208 52.4
Eucgr.L03025 Eucalyptus grandis HOM05D003475 ORTHO05D004155 3.7e-52 209.1 208 52.4
Zm00001eb260330 Zea mays HOM05D003475 ORTHO05D004155 3.4e-50 202.6 181 55.2
Zm00001eb373040 Zea mays HOM05D003475 ORTHO05D004155 1.7e-49 200.3 208 47.6
Mapoly0002s0297 Marchantia polymorpha HOM05D003475 ORTHO05D004155 3.2e-48 196.1 205 46.3
Pp3c1_10400 Physcomitrium patens HOM05D003475 ORTHO05D004155 3.2e-48 196.1 203 47.8
AUR62022463 Chenopodium quinoa HOM05D003475 ORTHO05D004155 4.6e-47 192.2 161 60.2
vmacro19485 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 6.1e-47 191.8 162 59.3
Prupe.1G441400 Prunus persica HOM05D003475 ORTHO05D004155 1.1e-45 187.6 249 44.2
SMO361G0429 Selaginella moellendorffii HOM05D003475 ORTHO05D004155 9.7e-45 184.5 210 46.7
HPP92_004258 Vanilla planifolia HOM05D003475 ORTHO05D004155 1.3e-44 184.1 162 56.2
Eucgr.F00025 Eucalyptus grandis HOM05D003475 ORTHO05D004155 3.3e-37 159.5 168 50.6
Nitab4.5_0003649g0040 Nicotiana tabacum HOM05D003475 ORTHO05D004155 1.3e-36 157.5 126 59.5
Nitab4.5_0028870g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 9.1e-35 151.4 153 48.4
ATR0097G016 Amborella trichopoda HOM05D003475 ORTHO05D004155 1.3e-28 131.0 117 54.7
CBR_g23970 Chara braunii HOM05D003475 ORTHO05D004155 1.3e-28 131.0 237 35.9
Sc08g0000070 Simmondsia chinensis HOM05D003475 ORTHO05D004155 1.3e-28 131.0 117 53.8
PRCOL_00005577 Prasinoderma coloniale HOM05D003475 ORTHO05D004155 1.1e-27 127.9 243 36.2
Cre10.g423300 Chlamydomonas reinhardtii HOM05D003475 ORTHO05D004155 1.8e-19 100.5 224 33.0
SMO361G0168 Selaginella moellendorffii HOM05D003475 ORTHO05D004155 1.5e-13 80.9 204 30.9
MD08G1107100 Malus domestica HOM05D003475 ORTHO05D004155 2.8e-12 76.6 105 41.9
PSO675G3373 Papaver somniferum HOM05D003475 ORTHO05D004155 1.3e-09 67.8 52 51.9
HPP92_004236 Vanilla planifolia HOM05D003475 ORTHO05D004155 1.7e-09 67.4 36 77.8
PSO170G1173 Papaver somniferum HOM05D003475 ORTHO05D004155 1.9e-08 63.9 76 43.4
SMO226G0004 Selaginella moellendorffii HOM05D003475 ORTHO05D004155 1.0e-06 58.2 108 34.3


User provided reference genes

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