Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 5.2e-41 170.6 87 100.0
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 3.4e-16 88.2 50 82.0
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 7.6e-16 87.0 50 84.0
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 1.3e-15 86.3 50 82.0
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 2.2e-15 85.5 50 80.0
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 2.2e-15 85.5 64 67.2
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 4.9e-15 84.3 50 78.0
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 4.9e-15 84.3 51 78.4
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 4.9e-15 84.3 50 78.0
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 6.4e-15 84.0 50 78.0
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 8.4e-15 83.6 51 74.5
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 1.1e-14 83.2 64 65.6
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 1.4e-14 82.8 50 74.0
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 1.9e-14 82.4 50 78.0
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 3.2e-14 81.6 50 72.0
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 3.2e-14 81.6 50 74.0
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 3.2e-14 81.6 50 76.0
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 3.2e-14 81.6 50 76.0
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 4.2e-14 81.3 51 76.5
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 4.2e-14 81.3 51 76.5
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 4.2e-14 81.3 50 72.0
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 4.2e-14 81.3 50 74.0
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 4.2e-14 81.3 51 78.4
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 4.2e-14 81.3 51 76.5
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 5.4e-14 80.9 64 67.2
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 5.4e-14 80.9 50 76.0
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 5.4e-14 80.9 50 74.0
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 5.4e-14 80.9 50 70.0
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 7.1e-14 80.5 50 72.0
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 7.1e-14 80.5 47 78.7
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 7.1e-14 80.5 50 72.0
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 9.2e-14 80.1 52 69.2
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 9.2e-14 80.1 51 74.5
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 9.2e-14 80.1 51 74.5
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 9.2e-14 80.1 50 74.0
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 1.2e-13 79.7 56 69.6
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 1.2e-13 79.7 50 72.0
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 1.6e-13 79.3 50 74.0
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 1.6e-13 79.3 50 74.0
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 1.6e-13 79.3 50 76.0
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.6e-13 79.3 49 73.5
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 2.1e-13 79.0 51 70.6
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 2.1e-13 79.0 47 78.7
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 2.1e-13 79.0 49 77.6
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 2.1e-13 79.0 50 76.0
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 2.7e-13 78.6 50 72.0
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 2.7e-13 78.6 49 75.5
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.7e-13 78.6 61 65.6
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 2.7e-13 78.6 49 73.5
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 2.7e-13 78.6 49 73.5
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 2.7e-13 78.6 49 75.5
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 3.5e-13 78.2 50 72.0
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 3.5e-13 78.2 50 72.0
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 3.5e-13 78.2 47 78.7
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 3.5e-13 78.2 47 78.7
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 3.5e-13 78.2 47 78.7
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 3.5e-13 78.2 61 65.6
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 3.5e-13 78.2 47 76.6
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 4.6e-13 77.8 50 70.0
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 6.0e-13 77.4 51 72.5
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 7.8e-13 77.0 49 71.4
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 7.8e-13 77.0 49 71.4
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 7.8e-13 77.0 47 74.5
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 7.8e-13 77.0 50 76.0
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 7.8e-13 77.0 47 74.5
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 7.8e-13 77.0 50 72.0
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 7.8e-13 77.0 47 78.7
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 7.8e-13 77.0 47 78.7
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 1.0e-12 76.6 49 71.4
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 1.0e-12 76.6 50 70.0
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 1.3e-12 76.3 50 74.0
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 1.3e-12 76.3 50 70.0
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 1.7e-12 75.9 50 68.0
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 1.7e-12 75.9 51 74.5
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 2.3e-12 75.5 50 68.0
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 2.3e-12 75.5 50 68.0
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 2.3e-12 75.5 50 68.0
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 2.3e-12 75.5 50 68.0
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 2.3e-12 75.5 50 68.0
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 2.3e-12 75.5 50 68.0
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 2.3e-12 75.5 50 68.0
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 3.0e-12 75.1 50 68.0
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 3.0e-12 75.1 49 65.3
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 3.9e-12 74.7 50 68.0
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 3.9e-12 74.7 49 71.4
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 3.9e-12 74.7 50 66.0
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 3.9e-12 74.7 50 68.0
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 6.6e-12 73.9 50 66.0
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 6.6e-12 73.9 50 66.0
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 8.7e-12 73.6 50 66.0
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 1.1e-11 73.2 64 54.7
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 5.6e-11 70.9 50 66.0
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 5.6e-11 70.9 49 65.3
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 7.3e-11 70.5 50 68.0
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 1.3e-10 69.7 50 64.0
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 2.1e-10 68.9 51 66.7
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 3.6e-10 68.2 49 65.3
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 4.0e-09 64.7 52 67.3
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 2.2e-07 58.9 35 77.1
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 1.1e-06 56.6 46 65.2


User provided reference genes

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