Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 1.1e-182 643.3 346 100.0
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 3.0e-79 299.7 303 52.8
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.9e-78 297.0 295 53.9
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 5.6e-78 295.4 301 52.2
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 7.3e-78 295.0 305 51.8
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 8.0e-77 291.6 295 53.9
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.3e-76 290.0 283 54.1
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.9e-76 288.1 292 55.8
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.6e-75 286.6 295 51.5
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.6e-75 286.6 289 53.6
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.4e-75 286.2 307 51.8
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 3.4e-75 286.2 305 52.1
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 5.8e-75 285.4 302 52.6
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 5.8e-75 285.4 297 53.5
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 7.5e-75 285.0 282 55.7
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 9.8e-75 284.6 300 51.7
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.3e-74 284.3 292 53.4
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.2e-74 283.5 281 53.4
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.2e-74 283.5 269 55.0
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.9e-74 283.1 300 51.0
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 3.7e-74 282.7 298 51.7
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.7e-74 282.7 290 52.8
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.7e-74 282.7 294 51.0
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 3.7e-74 282.7 295 50.8
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 6.4e-74 282.0 294 52.0
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-73 281.2 296 51.7
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 1.1e-73 281.2 333 47.7
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.4e-73 280.8 285 53.0
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.4e-73 280.8 292 53.8
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.4e-73 280.0 299 51.5
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 2.4e-73 280.0 289 53.6
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.2e-73 279.6 292 51.4
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 4.1e-73 279.3 294 49.0
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 4.1e-73 279.3 299 49.5
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.4e-73 278.9 298 52.7
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 5.4e-73 278.9 299 51.2
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.4e-73 278.9 265 55.5
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 7.0e-73 278.5 278 56.5
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 9.2e-73 278.1 272 51.5
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-72 277.7 263 55.1
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.2e-72 277.7 294 51.4
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.6e-72 277.3 252 56.0
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.6e-72 277.3 302 55.6
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-72 277.3 263 55.1
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.6e-72 277.3 289 52.9
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 2.1e-72 276.9 294 51.4
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.1e-72 276.9 293 50.2
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.7e-72 276.6 295 49.8
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 2.7e-72 276.6 290 52.4
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 3.5e-72 276.2 298 48.7
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 3.5e-72 276.2 300 48.7
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 3.5e-72 276.2 242 59.1
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 6.0e-72 275.4 294 50.7
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.0e-71 274.6 294 52.4
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.3e-71 274.2 297 51.5
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.3e-71 274.2 290 52.4
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.3e-71 274.2 302 48.0
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.3e-71 274.2 243 55.1
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.7e-71 273.9 295 50.2
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 3.0e-71 273.1 295 49.8
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 3.9e-71 272.7 290 52.8
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 5.1e-71 272.3 294 50.3
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 6.6e-71 271.9 255 54.9
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 8.6e-71 271.6 296 49.3
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 8.6e-71 271.6 294 49.7
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.1e-70 271.2 281 53.0
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-70 271.2 285 50.9
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.1e-70 271.2 254 55.9
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.5e-70 270.8 268 54.5
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.9e-70 270.4 288 50.7
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.5e-70 270.0 292 51.0
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 2.5e-70 270.0 300 50.0
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.3e-70 269.2 288 49.7
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 4.3e-70 269.2 280 51.4
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 7.3e-70 268.5 256 54.7
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 7.3e-70 268.5 278 49.3
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 9.5e-70 268.1 261 53.3
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 9.5e-70 268.1 258 53.5
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.2e-69 267.7 259 54.8
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 1.2e-69 267.7 254 55.1
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-69 267.3 299 46.8
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.6e-69 267.3 249 56.6
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 2.1e-69 266.9 252 56.3
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 2.8e-69 266.5 270 51.5
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.8e-69 266.5 261 52.9
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 2.8e-69 266.5 295 50.8
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.6e-69 266.2 261 52.9
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 3.6e-69 266.2 299 48.2
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.6e-69 266.2 312 48.7
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 6.2e-69 265.4 298 46.6
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 8.1e-69 265.0 283 49.5
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-68 264.6 290 51.7
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-68 264.6 290 51.7
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 2.3e-68 263.5 252 56.0
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.3e-68 263.5 298 46.3
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.1e-68 263.1 261 52.5
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 5.2e-68 262.3 300 48.0
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 1.5e-67 260.8 253 52.2
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.5e-67 260.8 295 47.1
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 2.0e-67 260.4 300 47.3
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.0e-67 260.4 286 48.3
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.0e-67 260.4 254 56.7
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 2.6e-67 260.0 300 47.0
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 3.4e-67 259.6 299 47.2
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 5.8e-67 258.8 269 50.6
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 9.9e-67 258.1 297 47.5
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 9.9e-67 258.1 300 48.0
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.3e-66 257.7 300 47.3
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.3e-66 257.7 297 47.1
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.3e-66 257.7 297 47.8
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.3e-66 257.7 297 47.1
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.3e-66 257.7 284 48.6
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.3e-66 257.7 286 48.3
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.7e-66 257.3 302 46.7
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.7e-66 257.3 289 48.8
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.2e-66 256.9 280 48.6
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 3.7e-66 256.1 255 55.3
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 4.9e-66 255.8 250 52.0
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.1e-65 254.6 298 46.0
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.4e-65 254.2 292 49.0
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 2.4e-65 253.4 289 47.4
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.2e-65 253.1 282 48.9
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.2e-65 253.1 295 48.5
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.2e-65 253.1 252 54.8
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 5.4e-65 252.3 289 47.8
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 7.1e-65 251.9 299 47.8
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 9.2e-65 251.5 272 50.0
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 9.2e-65 251.5 292 46.6
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.6e-64 250.8 255 52.9
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.7e-64 250.0 288 48.6
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.5e-64 249.6 252 52.4
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 4.6e-64 249.2 267 47.6
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.3e-63 247.7 263 50.6
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.7e-63 247.3 306 45.1
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 6.6e-63 245.4 255 51.8
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 8.6e-63 245.0 292 46.6
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 2.5e-62 243.4 239 51.9
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 7.3e-62 241.9 283 46.6
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 9.5e-62 241.5 261 49.0
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 9.5e-62 241.5 287 45.6
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 2.1e-61 240.4 253 51.0
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 2.1e-61 240.4 254 49.2
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 8.1e-61 238.4 245 48.2
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.8e-60 237.3 262 46.6
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 6.8e-60 235.3 288 46.5
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 4.4e-59 232.6 250 50.8
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 2.9e-58 229.9 283 46.6
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 1.2e-56 224.6 160 65.0
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 1.7e-55 220.7 178 57.9
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.5e-54 217.6 245 47.3
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.5e-54 217.6 157 63.1
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 1.2e-53 214.5 234 50.9
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 4.0e-52 209.5 239 47.7
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 8.4e-50 201.8 322 41.9
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.1e-47 192.6 150 60.7
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.3e-42 177.9 151 57.6
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 2.4e-41 173.7 248 37.9
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.5e-38 164.5 170 50.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.4e-36 157.9 171 49.1
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 9.0e-36 155.2 203 44.3
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.7e-32 143.7 209 39.2
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.7e-32 143.7 202 43.6
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 1.9e-30 137.5 234 40.6
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 1.3e-29 134.8 190 42.1
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.2e-27 128.3 237 39.7
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 2.0e-27 127.5 107 62.6
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.4e-25 121.3 91 63.7
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 9.3e-25 118.6 164 45.7
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 8.2e-21 105.5 97 56.7
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.4e-20 104.0 80 62.5
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 2.9e-18 97.1 77 55.8
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 5.0e-18 96.3 82 50.0
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.0e-15 88.6 77 58.4
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.9e-09 67.8 123 36.6
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.7e-08 63.9 55 47.3


User provided reference genes

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