Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 3.2e-56 221.5 108 100.0
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 8.5e-09 63.9 41 70.7
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 2.5e-08 62.4 37 75.7
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 7.2e-08 60.8 38 68.4
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 9.4e-08 60.5 38 71.1
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 9.4e-08 60.5 38 71.1
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 9.4e-08 60.5 42 66.7
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 9.4e-08 60.5 40 70.0
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 1.2e-07 60.1 40 70.0
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 1.6e-07 59.7 38 71.1
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.6e-07 59.7 41 65.9
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 1.6e-07 59.7 41 65.9
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 1.6e-07 59.7 42 66.7
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 2.1e-07 59.3 49 55.1
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.1e-07 59.3 38 65.8
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.1e-07 59.3 38 65.8
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 2.1e-07 59.3 38 65.8
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 2.1e-07 59.3 38 65.8
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 2.1e-07 59.3 38 68.4
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.7e-07 58.9 38 68.4
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 2.7e-07 58.9 38 71.1
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 2.7e-07 58.9 37 73.0
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 3.6e-07 58.5 40 67.5
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 3.6e-07 58.5 37 70.3
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 3.6e-07 58.5 40 67.5
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 4.7e-07 58.2 38 65.8
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 4.7e-07 58.2 38 68.4
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 8.0e-07 57.4 55 50.9
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 8.0e-07 57.4 37 67.6
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 8.0e-07 57.4 38 63.2
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 1.0e-06 57.0 37 67.6
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 1.0e-06 57.0 38 68.4
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.0e-06 57.0 38 68.4
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.0e-06 57.0 38 68.4
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.4e-06 56.6 41 63.4
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 1.4e-06 56.6 38 65.8
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.4e-06 56.6 38 68.4
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.4e-06 56.6 37 67.6
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 1.4e-06 56.6 40 62.5
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 1.8e-06 56.2 38 68.4
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 1.8e-06 56.2 65 49.2
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.8e-06 56.2 37 67.6
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 1.8e-06 56.2 41 61.0
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 1.8e-06 56.2 41 61.0
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 1.8e-06 56.2 38 68.4
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 2.3e-06 55.8 38 63.2
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 3.0e-06 55.5 37 64.9
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 3.0e-06 55.5 37 64.9
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.0e-06 55.5 38 65.8
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.0e-06 55.5 38 65.8
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 4.0e-06 55.1 42 59.5
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 4.0e-06 55.1 42 59.5
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 4.0e-06 55.1 40 57.5
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 4.0e-06 55.1 37 64.9
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 5.2e-06 54.7 37 64.9
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 5.2e-06 54.7 38 65.8
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 5.2e-06 54.7 37 62.2
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 6.7e-06 54.3 39 64.1
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 6.7e-06 54.3 37 64.9
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 6.7e-06 54.3 37 64.9
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 6.7e-06 54.3 63 47.6
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 6.7e-06 54.3 37 67.6
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 8.8e-06 53.9 37 64.9
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 8.8e-06 53.9 40 60.0
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 8.8e-06 53.9 40 60.0
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 8.8e-06 53.9 38 57.9


User provided reference genes

Program Settings