Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16626 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 3.6e-65 251.9 176 100.0
Aqoxy2G04020 Aquilegia oxysepala HOM05D004145 ORTHO05D004879 4.0e-32 142.1 157 76.4
ATR0564G152 Amborella trichopoda HOM05D004145 ORTHO05D004879 1.5e-31 140.2 157 61.1
PSO017G5505 Papaver somniferum HOM05D004145 ORTHO05D004879 2.6e-31 139.4 157 75.2
PSO675G1731 Papaver somniferum HOM05D004145 ORTHO05D004879 2.4e-29 132.9 105 61.9
Rhsim03G0245100 Rhododendron simsii HOM05D004145 ORTHO05D004879 3.2e-29 132.5 98 61.2
Sp4g17260 Schrenkiella parvula HOM05D004145 ORTHO05D004879 3.2e-29 132.5 157 71.3
MD17G1228000 Malus domestica HOM05D004145 ORTHO05D004879 5.4e-29 131.7 157 72.6
Carub.0004s1666 Capsella rubella HOM05D004145 ORTHO05D004879 7.1e-29 131.3 101 63.4
CDE05G0178 Ceratophyllum demersum HOM05D004145 ORTHO05D004879 7.1e-29 131.3 101 59.4
vmacro06192 Vaccinium macrocarpon HOM05D004145 ORTHO05D004879 1.2e-28 130.6 100 59.0
Hma1.2p1_1636F.1_g294830 Hydrangea macrophylla HOM05D004145 ORTHO05D004879 1.6e-28 130.2 100 61.0
Prupe.6G335900 Prunus persica HOM05D004145 ORTHO05D004879 1.6e-28 130.2 101 61.4
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 2.1e-28 129.8 100 63.0
FvH4_2g12670 Fragaria vesca HOM05D004145 ORTHO05D004879 2.1e-28 129.8 100 61.0
HanXRQChr15g0469811 Helianthus annuus HOM05D004145 ORTHO05D004879 2.1e-28 129.8 157 53.5
BolC4t22972H Brassica oleracea HOM05D004145 ORTHO05D004879 2.7e-28 129.4 157 71.3
FAN15G1727 Fragaria x ananassa HOM05D004145 ORTHO05D004879 2.7e-28 129.4 100 61.0
FAN24G1676 Fragaria x ananassa HOM05D004145 ORTHO05D004879 2.7e-28 129.4 100 61.0
FAN27G3237 Fragaria x ananassa HOM05D004145 ORTHO05D004879 2.7e-28 129.4 100 61.0
Nn2g12613 Nelumbo nucifera HOM05D004145 ORTHO05D004879 2.7e-28 129.4 157 59.2
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 2.7e-28 129.4 157 56.7
Cpa.g.sc117.30 Carica papaya HOM05D004145 ORTHO05D004879 3.5e-28 129.0 100 62.0
Potri.005G045200 Populus trichocarpa HOM05D004145 ORTHO05D004879 3.5e-28 129.0 157 70.7
CiPaw.13G133200 Carya illinoinensis HOM05D004145 ORTHO05D004879 4.6e-28 128.6 101 60.4
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 4.6e-28 128.6 101 59.4
A05p10730 Brassica napus HOM05D004145 ORTHO05D004879 6.0e-28 128.3 157 70.7
BraA05t20017Z Brassica rapa HOM05D004145 ORTHO05D004879 6.0e-28 128.3 157 70.7
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 6.0e-28 128.3 97 63.9
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 1.0e-27 127.5 157 55.4
BcaB06g28815 Brassica carinata HOM05D004145 ORTHO05D004879 1.3e-27 127.1 100 61.0
BcaC02g11578 Brassica carinata HOM05D004145 ORTHO05D004879 1.3e-27 127.1 101 61.4
Thhalv10016297m.g Eutrema salsugineum HOM05D004145 ORTHO05D004879 1.3e-27 127.1 100 61.0
TWI56G0710 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 1.3e-27 127.1 157 54.1
ECA246G2136 Erigeron canadensis HOM05D004145 ORTHO05D004879 1.7e-27 126.7 100 60.0
Hund07348 Selenicereus undatus HOM05D004145 ORTHO05D004879 2.3e-27 126.3 157 54.1
Aa31sc654G10 Aethionema arabicum HOM05D004145 ORTHO05D004879 3.0e-27 125.9 100 61.0
Lj9A674T60 Lonicera japonica HOM05D004145 ORTHO05D004879 3.0e-27 125.9 100 60.0
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 3.0e-27 125.9 100 60.0
MD12G1232500 Malus domestica HOM05D004145 ORTHO05D004879 3.9e-27 125.6 114 53.5
RcHm_v2.0_Chr6g0273391 Rosa chinensis HOM05D004145 ORTHO05D004879 3.9e-27 125.6 100 59.0
Gohir.A13G101100 Gossypium hirsutum HOM05D004145 ORTHO05D004879 5.1e-27 125.2 157 62.4
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 5.1e-27 125.2 157 56.7
CSS0025723 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 6.6e-27 124.8 101 56.4
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 6.6e-27 124.8 157 54.1
Haze_04291 Corylus avellana HOM05D004145 ORTHO05D004879 6.6e-27 124.8 100 60.0
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 6.6e-27 124.8 101 58.4
Actinidia30923 Actinidia chinensis HOM05D004145 ORTHO05D004879 8.7e-27 124.4 101 57.4
Gohir.D13G104600 Gossypium hirsutum HOM05D004145 ORTHO05D004879 8.7e-27 124.4 157 61.8
Gorai.013G117100 Gossypium raimondii HOM05D004145 ORTHO05D004879 8.7e-27 124.4 157 61.8
HPP92_016926 Vanilla planifolia HOM05D004145 ORTHO05D004879 8.7e-27 124.4 98 58.2
BcaB02g09494 Brassica carinata HOM05D004145 ORTHO05D004879 1.1e-26 124.0 157 68.2
Ciclev10019027m.g Citrus clementina HOM05D004145 ORTHO05D004879 1.1e-26 124.0 101 58.4
Migut.H01121 Erythranthe guttata HOM05D004145 ORTHO05D004879 1.1e-26 124.0 101 57.4
FAN20G3151 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.1e-26 124.0 102 59.8
QL03p001164 Quercus lobata HOM05D004145 ORTHO05D004879 1.1e-26 124.0 157 70.1
AL4G30980 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.5e-26 123.6 101 59.4
SGA_v2.0_scaffold80G25752 Striga asiatica HOM05D004145 ORTHO05D004879 1.5e-26 123.6 101 57.4
AT2G34970 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 1.9e-26 123.2 101 60.4
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 1.9e-26 123.2 101 60.4
MSTRG.2685 Avicennia marina HOM05D004145 ORTHO05D004879 2.5e-26 122.9 99 57.6
COL.COLO4_36032 Corchorus olitorius HOM05D004145 ORTHO05D004879 2.5e-26 122.9 157 56.7
Dinv04277 Davidia involucrata HOM05D004145 ORTHO05D004879 2.5e-26 122.9 157 61.8
MD00G1051200 Malus domestica HOM05D004145 ORTHO05D004879 2.5e-26 122.9 100 58.0
CsaV3_2G004470 Cucumis sativus L. HOM05D004145 ORTHO05D004879 3.3e-26 122.5 101 55.4
Lalb_Chr15g0076981 Lupinus albus HOM05D004145 ORTHO05D004879 3.3e-26 122.5 157 68.8
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 3.3e-26 122.5 101 56.4
VMungo0540G0740 Vigna mungo HOM05D004145 ORTHO05D004879 3.3e-26 122.5 101 54.5
arahy.Tifrunner.gnm1.ann1.N9EJ2X Arachis hypogaea HOM05D004145 ORTHO05D004879 5.6e-26 121.7 157 68.2
Os02g0812400 Oryza sativa ssp. japonica HOM05D004145 ORTHO05D004879 5.6e-26 121.7 97 53.6
Glyma.03G243100 Glycine max HOM05D004145 ORTHO05D004879 7.3e-26 121.3 101 54.5
Thecc.05G254300 Theobroma cacao HOM05D004145 ORTHO05D004879 7.3e-26 121.3 157 69.4
CSS0045127 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 9.6e-26 120.9 101 54.5
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 9.6e-26 120.9 157 70.1
arahy.Tifrunner.gnm1.ann1.Q65QWU Arachis hypogaea HOM05D004145 ORTHO05D004879 1.2e-25 120.6 157 67.5
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 1.2e-25 120.6 157 67.5
ClCG07G016490 Citrullus lanatus HOM05D004145 ORTHO05D004879 1.6e-25 120.2 101 54.5
MELO3C004345.2 Cucumis melo HOM05D004145 ORTHO05D004879 1.6e-25 120.2 101 54.5
Atru.chr2.638 Acer truncatum HOM05D004145 ORTHO05D004879 3.6e-25 119.0 100 55.0
Sed0004488 Sechium edule HOM05D004145 ORTHO05D004879 3.6e-25 119.0 157 68.2
Manes.09G159400 Manihot esculenta HOM05D004145 ORTHO05D004879 4.7e-25 118.6 99 55.6
Zm00001eb258570 Zea mays HOM05D004145 ORTHO05D004879 4.7e-25 118.6 101 51.5
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 6.2e-25 118.2 101 53.5
Ah.06g195470 Amaranthus hybridus HOM05D004145 ORTHO05D004879 1.4e-24 117.1 158 66.5
CANSAT54G2505 Cannabis sativa HOM05D004145 ORTHO05D004879 1.8e-24 116.7 99 55.6
BcaB02g09493 Brassica carinata HOM05D004145 ORTHO05D004879 2.4e-24 116.3 105 53.3
Dinv09830 Davidia involucrata HOM05D004145 ORTHO05D004879 2.4e-24 116.3 157 61.8
Carub.0007s2297 Capsella rubella HOM05D004145 ORTHO05D004879 3.1e-24 115.9 102 55.9
C04p13820 Brassica napus HOM05D004145 ORTHO05D004879 5.2e-24 115.2 157 67.5
AUR62006653 Chenopodium quinoa HOM05D004145 ORTHO05D004879 5.2e-24 115.2 157 63.7
AT4G18300 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 6.9e-24 114.8 102 56.9
Medtr7g115610 Medicago truncatula HOM05D004145 ORTHO05D004879 6.9e-24 114.8 157 45.9
TPR.G33341 Trifolium pratense HOM05D004145 ORTHO05D004879 6.9e-24 114.8 100 54.0
DCAR_006415 Daucus carota HOM05D004145 ORTHO05D004879 2.0e-23 113.2 153 52.9
AUR62000308 Chenopodium quinoa HOM05D004145 ORTHO05D004879 2.6e-23 112.8 157 54.1
Haze_14654 Corylus avellana HOM05D004145 ORTHO05D004879 2.6e-23 112.8 101 56.4
Sc16g0010400 Simmondsia chinensis HOM05D004145 ORTHO05D004879 3.4e-23 112.5 103 48.5
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 5.8e-23 111.7 97 54.6
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 7.6e-23 111.3 118 49.2
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 7.6e-23 111.3 155 60.6
Eucgr.H04421 Eucalyptus grandis HOM05D004145 ORTHO05D004879 1.3e-22 110.5 100 54.0
Psat0s1551g0320 Pisum sativum HOM05D004145 ORTHO05D004879 2.2e-22 109.8 95 51.6
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 2.9e-22 109.4 153 64.1
AL7G36090 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 3.8e-22 109.0 102 54.9
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 3.8e-22 109.0 154 65.6
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 4.9e-22 108.6 79 64.6
Lj5g0001865 Lotus japonicus HOM05D004145 ORTHO05D004879 4.9e-22 108.6 157 45.2
Glyma.19G240600 Glycine max HOM05D004145 ORTHO05D004879 1.4e-21 107.1 157 51.0
PSO675G6749 Papaver somniferum HOM05D004145 ORTHO05D004879 2.4e-21 106.3 154 68.2
Phvul.006G097200 Phaseolus vulgaris HOM05D004145 ORTHO05D004879 5.4e-21 105.1 101 48.5
Ca_12868_v3 Cicer arietinum L. HOM05D004145 ORTHO05D004879 7.1e-21 104.8 157 50.3
MBI12_g33072_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 1.6e-20 103.6 64 70.3
SHI18260 Sapria himalayana HOM05D004145 ORTHO05D004879 2.7e-20 102.8 97 53.6
CARHR178030 Cardamine hirsuta HOM05D004145 ORTHO05D004879 3.5e-20 102.4 99 50.5
AT3G02270 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 1.3e-19 100.5 95 52.6
Mapoly0056s0115 Marchantia polymorpha HOM05D004145 ORTHO05D004879 1.5e-18 97.1 96 47.9
Pp3c1_20030 Physcomitrium patens HOM05D004145 ORTHO05D004879 2.5e-18 96.3 76 52.6
EL10Ac4g09963 Beta vulgaris HOM05D004145 ORTHO05D004879 3.3e-18 95.9 124 40.3
AL3G11540 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.3e-17 94.0 95 49.5
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 3.6e-17 92.4 75 57.3
RcHm_v2.0_Chr4g0430791 Rosa chinensis HOM05D004145 ORTHO05D004879 3.8e-14 82.4 50 72.0
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 6.4e-14 81.6 104 37.5
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 3.5e-12 75.9 104 37.5
PSO339G4752 Papaver somniferum HOM05D004145 ORTHO05D004879 3.3e-10 69.3 64 56.2
FvH4_4g24260 Fragaria vesca HOM05D004145 ORTHO05D004879 1.3e-09 67.4 40 77.5
FAN07G1263 Fragaria x ananassa HOM05D000016 ORTHO05D004879 1.3e-09 67.4 40 77.5
FAN17G0778 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.3e-09 67.4 40 77.5
FvH4_4g24061 Fragaria vesca HOM05D004145 ORTHO05D004879 2.8e-09 66.2 40 75.0
ECA246G4181 Erigeron canadensis HOM05D004145 ORTHO05D004879 1.1e-08 64.3 98 39.8
MCO16G505 Micromonas commoda HOM05D004145 ORTHO05D004879 2.4e-08 63.2 77 39.0
GSVIVG01032340001 Vitis vinifera HOM05D004145 ORTHO05D004879 5.3e-08 62.0 37 64.9
GSVIVG01032326001 Vitis vinifera HOM05D004145 ORTHO05D004879 9.0e-08 61.2 37 64.9
Sabra19G0021200 Salix brachista HOM05D004145 ORTHO05D004879 2.6e-07 59.7 68 44.1
BolC4t27888H Brassica oleracea HOM05D004145 ORTHO05D004879 5.8e-07 58.5 121 33.9
CBR_g23483 Chara braunii HOM05D004145 ORTHO05D004879 1.3e-06 57.4 112 30.4
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 2.2e-06 56.6 32 75.0
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 4.9e-06 55.5 36 58.3
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 8.4e-06 54.7 36 58.3


User provided reference genes

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