Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 2.5e-189 665.2 329 100.0
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.8e-110 403.3 267 72.7
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 1.5e-109 400.2 307 64.8
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 6.4e-108 394.8 264 71.6
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 6.4e-108 394.8 270 70.4
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 1.4e-107 393.7 264 72.3
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 3.2e-107 392.5 267 70.8
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 4.2e-107 392.1 267 71.5
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 7.1e-107 391.3 264 72.0
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.2e-106 390.6 267 71.2
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.1e-106 389.8 266 71.1
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 2.1e-106 389.8 264 71.2
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.1e-106 389.8 267 71.2
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 2.7e-106 389.4 268 70.1
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.0e-105 387.5 264 71.2
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.0e-105 387.5 267 69.3
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 1.0e-105 387.5 267 70.4
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.7e-105 386.7 278 69.1
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.7e-105 386.7 267 70.0
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.3e-105 386.3 267 69.3
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 3.0e-105 386.0 264 72.3
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 3.0e-105 386.0 267 70.0
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 3.0e-105 386.0 268 69.8
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.9e-105 385.6 266 69.9
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.9e-105 385.6 267 71.5
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 3.9e-105 385.6 264 70.5
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 3.9e-105 385.6 267 70.8
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 5.1e-105 385.2 268 70.5
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 5.1e-105 385.2 278 68.3
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 6.6e-105 384.8 266 69.9
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 6.6e-105 384.8 266 70.7
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 6.6e-105 384.8 267 69.3
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 6.6e-105 384.8 267 70.4
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.1e-104 384.0 263 70.7
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 1.5e-104 383.6 279 68.5
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.9e-104 383.3 267 69.7
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.9e-104 383.3 267 69.3
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.5e-104 382.9 267 69.7
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.5e-104 382.9 267 70.0
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 3.3e-104 382.5 264 70.1
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.3e-104 382.5 267 68.9
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 3.3e-104 382.5 265 69.4
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 3.3e-104 382.5 265 70.2
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 3.3e-104 382.5 265 70.2
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 4.3e-104 382.1 266 69.5
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 4.3e-104 382.1 267 69.7
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 4.3e-104 382.1 266 69.2
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 4.3e-104 382.1 266 69.2
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 5.6e-104 381.7 265 70.9
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 5.6e-104 381.7 265 69.4
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 5.6e-104 381.7 267 70.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 5.6e-104 381.7 267 70.0
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 7.3e-104 381.3 268 67.2
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 7.3e-104 381.3 279 67.0
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 7.3e-104 381.3 242 75.6
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 7.3e-104 381.3 285 66.7
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 7.3e-104 381.3 290 66.9
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 7.3e-104 381.3 281 67.3
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 9.6e-104 380.9 334 59.3
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 9.6e-104 380.9 274 68.6
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 9.6e-104 380.9 267 68.5
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 9.6e-104 380.9 267 68.5
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 9.6e-104 380.9 292 65.8
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 9.6e-104 380.9 267 69.7
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.3e-103 380.6 267 70.8
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.3e-103 380.6 265 69.4
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.3e-103 380.6 268 69.4
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.6e-103 380.2 285 66.7
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.6e-103 380.2 268 69.0
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.6e-103 380.2 265 68.7
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.1e-103 379.8 264 71.2
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.1e-103 379.8 283 66.8
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 2.1e-103 379.8 265 69.8
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.8e-103 379.4 268 66.8
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 2.8e-103 379.4 267 69.3
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 2.8e-103 379.4 242 75.2
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 3.6e-103 379.0 276 67.4
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 4.8e-103 378.6 279 67.0
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 6.2e-103 378.3 267 68.9
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 6.2e-103 378.3 268 67.2
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 8.1e-103 377.9 268 66.4
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 1.1e-102 377.5 266 68.4
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.4e-102 377.1 268 66.8
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.4e-102 377.1 285 66.3
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.4e-102 377.1 285 66.3
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.4e-102 377.1 255 72.2
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.8e-102 376.7 285 66.3
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.8e-102 376.7 279 66.7
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 2.4e-102 376.3 265 66.8
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 2.4e-102 376.3 265 67.2
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 3.1e-102 375.9 265 67.2
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 4.0e-102 375.6 275 68.4
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 5.3e-102 375.2 267 68.2
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 5.3e-102 375.2 265 66.8
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 5.3e-102 375.2 301 63.1
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 5.3e-102 375.2 266 68.4
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 6.9e-102 374.8 264 68.2
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.9e-102 374.8 266 67.7
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 9.0e-102 374.4 267 68.9
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-101 374.0 264 66.7
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.2e-101 374.0 265 66.4
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 1.2e-101 374.0 264 66.7
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 1.5e-101 373.6 265 68.3
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.5e-101 373.6 267 68.5
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.0e-101 373.2 267 68.9
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 2.6e-101 372.9 291 62.9
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 3.4e-101 372.5 267 67.8
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 5.8e-101 371.7 266 68.0
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 5.8e-101 371.7 263 69.2
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 7.6e-101 371.3 267 67.8
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 9.9e-101 370.9 263 68.8
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.7e-100 370.2 267 67.4
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 2.2e-100 369.8 268 67.5
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.9e-100 369.4 233 76.8
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 3.8e-100 369.0 267 65.9
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 3.8e-100 369.0 267 65.9
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 3.8e-100 369.0 265 67.5
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 6.4e-100 368.2 265 67.2
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-99 367.1 279 65.9
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 2.4e-99 366.3 298 61.1
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 9.3e-99 364.4 263 66.5
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 2.1e-98 363.2 267 67.0
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.3e-97 359.8 268 64.6
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.1e-96 357.5 286 61.2
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 4.3e-96 355.5 222 74.8
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 9.6e-96 354.4 280 63.9
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.3e-95 354.0 224 75.0
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.6e-95 353.6 221 75.1
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 2.0e-93 346.7 238 71.4
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.6e-93 346.3 224 73.2
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 7.1e-91 338.2 226 71.2
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 2.7e-90 336.3 224 71.4
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 3.7e-87 325.9 222 68.0
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 4.5e-85 318.9 213 71.8
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 6.7e-81 305.1 260 56.5
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 1.8e-73 280.4 233 61.8
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.5e-64 250.8 158 74.7
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 2.2e-63 246.9 227 55.5
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 8.2e-63 245.0 170 70.0
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.3e-60 237.7 182 63.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 2.2e-60 236.9 219 54.8
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 1.6e-50 204.1 146 68.5
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 8.8e-49 198.4 157 63.1
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.6e-48 196.8 141 65.2
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.2e-47 193.7 143 64.3
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.1e-46 191.4 122 71.3
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.1e-46 191.4 148 64.2
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 4.9e-23 112.8 69 71.0
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 8.1e-10 68.9 50 60.0
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 2.3e-09 67.4 77 49.4


User provided reference genes

Program Settings