Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.7e-216 755.7 398 100.0
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 9.0e-181 637.1 352 95.2
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.1e-121 438.3 241 95.4
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 6.0e-68 262.3 375 44.0
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 1.9e-66 257.3 354 44.6
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 2.4e-64 250.4 360 44.2
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 3.1e-64 250.0 369 43.6
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 3.1e-64 250.0 391 41.4
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 2.0e-63 247.3 354 45.5
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 2.6e-63 246.9 369 43.4
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.6e-63 246.9 357 44.3
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 7.6e-63 245.4 355 43.7
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 9.9e-63 245.0 381 44.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 1.7e-62 244.2 361 44.0
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 2.9e-62 243.4 355 44.8
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.9e-62 243.4 364 43.4
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 4.9e-62 242.7 354 41.8
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 6.4e-62 242.3 355 43.1
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 8.4e-62 241.9 359 41.8
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 8.4e-62 241.9 354 42.4
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.4e-61 240.4 354 41.5
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 4.2e-61 239.6 355 44.2
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 5.5e-61 239.2 358 44.7
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 9.3e-61 238.4 354 42.4
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 6.0e-60 235.7 365 41.1
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.3e-59 234.6 364 42.3
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 1.8e-59 234.2 354 42.1
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 1.8e-59 234.2 359 42.1
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 3.0e-59 233.4 356 42.4
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 1.1e-58 231.5 354 42.4
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.9e-58 230.7 363 42.7
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 2.5e-58 230.3 354 41.5
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.5e-58 230.3 354 41.0
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 5.6e-58 229.2 360 43.1
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 5.6e-58 229.2 354 39.8
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 7.4e-58 228.8 354 41.5
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 9.6e-58 228.4 354 41.0
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 9.6e-58 228.4 356 42.1
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 1.3e-57 228.0 356 40.7
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 1.3e-57 228.0 357 41.5
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 1.6e-57 227.6 348 41.4
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 1.6e-57 227.6 354 41.5
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 1.6e-57 227.6 359 42.3
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 8.1e-57 225.3 378 40.5
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 8.1e-57 225.3 356 42.4
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.4e-56 224.6 366 39.3
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 1.8e-56 224.2 354 40.4
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 1.8e-56 224.2 354 40.1
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 2.4e-56 223.8 354 38.7
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 3.1e-56 223.4 365 42.5
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 4.0e-56 223.0 363 40.5
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 4.0e-56 223.0 376 40.4
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 6.9e-56 222.2 356 40.2
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 1.2e-55 221.5 355 40.0
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.2e-55 221.5 355 42.0
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 1.5e-55 221.1 359 40.1
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 2.0e-55 220.7 358 40.8
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 2.6e-55 220.3 354 42.1
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 4.5e-55 219.5 369 41.7
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 4.5e-55 219.5 354 38.7
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 5.8e-55 219.2 354 42.1
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 7.6e-55 218.8 362 42.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.0e-54 218.4 367 39.5
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 1.3e-54 218.0 363 43.0
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 6.5e-54 215.7 354 40.4
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 6.5e-54 215.7 356 39.9
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 8.4e-54 215.3 354 40.4
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 8.4e-54 215.3 356 41.9
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 1.4e-53 214.5 358 38.8
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 1.9e-53 214.2 355 41.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 2.5e-53 213.8 355 38.0
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 4.2e-53 213.0 354 40.4
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 5.5e-53 212.6 355 41.4
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 7.1e-53 212.2 355 39.2
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 1.8e-51 207.6 366 38.3
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.3e-50 203.4 354 40.4
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 1.6e-49 201.1 371 38.5
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 8.2e-49 198.7 319 42.3
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 1.1e-48 198.4 324 42.0
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 2.4e-48 197.2 320 41.6
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 1.5e-47 194.5 354 37.9
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 3.4e-47 193.4 354 38.7
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 2.2e-46 190.7 330 40.3
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 1.4e-45 188.0 354 38.1
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 1.4e-45 188.0 354 38.4
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 1.4e-45 188.0 354 38.1
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 3.2e-45 186.8 354 38.1
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 1.2e-44 184.9 364 36.0
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 3.5e-44 183.3 316 39.6
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 2.3e-43 180.6 362 33.1
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 1.2e-39 168.3 352 35.2
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 2.2e-33 147.5 249 39.0
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 1.8e-32 144.4 221 42.1
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.7e-30 137.9 365 34.5
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 2.2e-25 120.9 373 30.8
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 1.6e-23 114.8 238 38.2
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 5.9e-23 112.8 325 30.5
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 2.2e-22 110.9 379 28.0
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.1e-20 104.4 214 36.4
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 3.7e-17 93.6 257 33.9
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 3.7e-17 93.6 112 50.0
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.6e-15 88.2 226 34.1
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 5.9e-15 86.3 149 34.2
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.0e-14 85.5 114 46.5
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 5.0e-14 83.2 268 32.1
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 1.2e-12 78.6 184 34.8
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 5.2e-11 73.2 144 35.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 5.2e-11 73.2 96 43.8
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.3e-09 68.6 262 27.1
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 4.8e-09 66.6 299 26.1
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 4.1e-08 63.5 85 44.7
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 7.0e-08 62.8 54 51.9
SEGI_31172 Sequoiadendron giganteum HOM05D062961 ORTHO05D007905 2.9e-06 57.4 45 73.3


User provided reference genes

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