Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 3.6e-38 161.0 77 100.0
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.6e-25 119.0 57 96.5
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 3.6e-17 91.3 55 74.5
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 3.0e-16 88.2 55 74.5
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 3.9e-16 87.8 55 72.7
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 6.7e-16 87.0 55 70.9
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 6.7e-16 87.0 55 70.9
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 6.7e-16 87.0 55 70.9
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 6.7e-16 87.0 55 72.7
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 8.7e-16 86.7 55 72.7
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 8.7e-16 86.7 68 61.8
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 8.7e-16 86.7 55 72.7
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 8.7e-16 86.7 55 72.7
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 1.1e-15 86.3 55 72.7
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 1.1e-15 86.3 55 72.7
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 1.5e-15 85.9 55 70.9
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 1.5e-15 85.9 55 70.9
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.5e-15 85.9 55 70.9
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 1.5e-15 85.9 55 70.9
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 1.5e-15 85.9 55 70.9
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 1.9e-15 85.5 55 72.7
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 1.9e-15 85.5 55 67.3
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 1.9e-15 85.5 55 69.1
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 1.9e-15 85.5 55 70.9
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 1.9e-15 85.5 55 69.1
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 2.5e-15 85.1 55 67.3
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 2.5e-15 85.1 55 70.9
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 2.5e-15 85.1 55 70.9
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 2.5e-15 85.1 55 70.9
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.5e-15 85.1 55 65.5
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 3.3e-15 84.7 55 67.3
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 3.3e-15 84.7 55 69.1
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 3.3e-15 84.7 55 69.1
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 3.3e-15 84.7 55 70.9
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 3.3e-15 84.7 55 69.1
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 4.3e-15 84.3 55 69.1
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 5.7e-15 84.0 55 67.3
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 5.7e-15 84.0 55 67.3
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 5.7e-15 84.0 55 69.1
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 5.7e-15 84.0 55 69.1
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 7.4e-15 83.6 55 69.1
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 7.4e-15 83.6 55 70.9
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 7.4e-15 83.6 55 70.9
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 7.4e-15 83.6 68 60.3
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 9.7e-15 83.2 56 66.1
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 9.7e-15 83.2 55 67.3
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 1.3e-14 82.8 55 65.5
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 1.3e-14 82.8 55 69.1
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 1.6e-14 82.4 55 69.1
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 1.6e-14 82.4 55 69.1
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 2.2e-14 82.0 55 65.5
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 2.2e-14 82.0 68 60.3
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.2e-14 82.0 68 60.3
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 2.2e-14 82.0 55 65.5
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 2.8e-14 81.6 55 67.3
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 2.8e-14 81.6 56 62.5
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 3.7e-14 81.3 55 69.1
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 4.8e-14 80.9 55 65.5
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 8.2e-14 80.1 55 65.5
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 8.2e-14 80.1 56 62.5
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 8.2e-14 80.1 56 60.7
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 1.1e-13 79.7 55 65.5
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 1.4e-13 79.3 55 67.3
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 1.4e-13 79.3 55 65.5
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.4e-13 79.3 55 65.5
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.4e-13 79.3 55 65.5
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.4e-13 79.3 55 65.5
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 1.4e-13 79.3 56 67.9
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 1.4e-13 79.3 55 65.5
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 1.4e-13 79.3 55 63.6
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 1.8e-13 79.0 55 63.6
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 1.8e-13 79.0 55 67.3
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 2.4e-13 78.6 55 61.8
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 3.1e-13 78.2 55 60.0
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 5.3e-13 77.4 55 61.8
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 5.3e-13 77.4 55 61.8
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 6.9e-13 77.0 55 61.8
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 9.1e-13 76.6 55 61.8
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 9.1e-13 76.6 55 61.8
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 9.1e-13 76.6 55 65.5
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 1.2e-12 76.3 55 61.8
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 1.2e-12 76.3 55 61.8
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 1.2e-12 76.3 55 61.8
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 2.6e-12 75.1 55 58.2
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 3.4e-12 74.7 55 60.0
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 7.7e-12 73.6 55 58.2
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 7.7e-12 73.6 55 58.2
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 1.0e-11 73.2 55 58.2
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.0e-11 73.2 55 61.8
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 2.5e-10 68.6 39 71.8
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 4.2e-10 67.8 42 66.7
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 7.9e-09 63.5 39 66.7
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 7.9e-09 63.5 39 66.7
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 7.9e-09 63.5 68 45.6
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 5.1e-08 60.8 65 44.6
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 7.4e-07 57.0 56 42.9


User provided reference genes

Program Settings