Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16479 Sequoiadendron giganteum HOM05D001262 ORTHO05D386882 3.6e-123 444.9 218 100.0
SEGI_05105 Sequoiadendron giganteum HOM05D001262 ORTHO05D001114 2.1e-14 83.6 60 70.0
SEGI_25548 Sequoiadendron giganteum HOM05D001262 ORTHO05D001114 2.7e-14 83.2 85 55.3
VMungo1309G0794 Vigna mungo HOM05D001262 ORTHO05D001114 1.7e-08 63.9 54 61.1
ATR0815G019 Amborella trichopoda HOM05D001262 ORTHO05D001114 5.0e-08 62.4 60 58.3
arahy.Tifrunner.gnm1.ann1.407M44 Arachis hypogaea HOM05D001262 ORTHO05D001114 6.5e-08 62.0 54 55.6
arahy.Tifrunner.gnm1.ann1.86V3X8 Arachis hypogaea HOM05D001262 ORTHO05D001114 6.5e-08 62.0 54 55.6
Phvul.009G095000 Phaseolus vulgaris HOM05D001262 ORTHO05D001114 8.5e-08 61.6 54 57.4
Glyma.04G068500 Glycine max HOM05D001262 ORTHO05D001114 1.1e-07 61.2 54 59.3
Glyma.06G070100 Glycine max HOM05D001262 ORTHO05D001114 1.1e-07 61.2 54 59.3
Lalb_Chr11g0063841 Lupinus albus HOM05D001262 ORTHO05D001114 1.5e-07 60.8 60 55.0
Nn2g11941 Nelumbo nucifera HOM05D001262 ORTHO05D001114 1.9e-07 60.5 54 53.7
GSVIVG01035817001 Vitis vinifera HOM05D001262 ORTHO05D001114 2.5e-07 60.1 54 57.4
Actinidia08813 Actinidia chinensis HOM05D001262 ORTHO05D001114 3.2e-07 59.7 52 59.6
MSTRG.22724 Avicennia marina HOM05D001262 ORTHO05D001114 3.2e-07 59.7 54 59.3
ClCG08G013150 Citrullus lanatus HOM05D001262 ORTHO05D001114 3.2e-07 59.7 50 62.0
Sabra18G0031900 Salix brachista HOM05D001262 ORTHO05D001114 3.2e-07 59.7 54 57.4
SGA_v2.0_scaffold22G09930 Striga asiatica HOM05D001262 ORTHO05D001114 3.2e-07 59.7 55 58.2
MELO3C011237.2 Cucumis melo HOM05D001262 ORTHO05D001114 4.2e-07 59.3 54 57.4
CsaV3_2G031870 Cucumis sativus L. HOM05D001262 ORTHO05D001114 4.2e-07 59.3 54 57.4
Gohir.D06G193300 Gossypium hirsutum HOM05D001262 ORTHO05D001114 4.2e-07 59.3 114 38.6
Gorai.011G080600 Gossypium raimondii HOM05D001262 ORTHO05D001114 4.2e-07 59.3 60 55.0
Sed0011913 Sechium edule HOM05D001262 ORTHO05D001114 4.2e-07 59.3 54 57.4
Gohir.A06G187100 Gossypium hirsutum HOM05D001262 ORTHO05D001114 5.5e-07 58.9 51 58.8
Gorai.010G227200 Gossypium raimondii HOM05D001262 ORTHO05D001114 5.5e-07 58.9 51 58.8
Lalb_Chr08g0243971 Lupinus albus HOM05D001262 ORTHO05D001114 5.5e-07 58.9 60 53.3
Ciclev10026074m.g Citrus clementina HOM05D001262 ORTHO05D001114 7.2e-07 58.5 54 57.4
MELO3C017906.2 Cucumis melo HOM05D001262 ORTHO05D001114 7.2e-07 58.5 54 57.4
CsaV3_4G001340 Cucumis sativus L. HOM05D001262 ORTHO05D001114 7.2e-07 58.5 54 57.4
CSS0016034 Camellia sinensis var. sinensis HOM05D001262 ORTHO05D001114 9.4e-07 58.2 51 58.8
DCAR_025481 Daucus carota HOM05D001262 ORTHO05D001114 9.4e-07 58.2 50 60.0
Gohir.A06G057600 Gossypium hirsutum HOM05D001262 ORTHO05D001114 9.4e-07 58.2 43 62.8
Gohir.A10G076600 Gossypium hirsutum HOM05D001262 ORTHO05D001114 9.4e-07 58.2 54 55.6
Gohir.D10G074700 Gossypium hirsutum HOM05D001262 ORTHO05D001114 9.4e-07 58.2 54 55.6
MBI01_g11881_MAGBIO Magnolia biondii HOM05D001262 ORTHO05D001114 9.4e-07 58.2 60 53.3
Sed0024054 Sechium edule HOM05D001262 ORTHO05D001114 9.4e-07 58.2 54 57.4
TWI32G0977 Tripterygium wilfordii HOM05D001262 ORTHO05D001114 9.4e-07 58.2 60 56.7
TAR626G0257 Trochodendron aralioides HOM05D001262 ORTHO05D001114 9.4e-07 58.2 47 59.6
arahy.Tifrunner.gnm1.ann1.KX3KG5 Arachis hypogaea HOM05D001262 ORTHO05D001114 1.2e-06 57.8 49 61.2
Ca_01087_v3 Cicer arietinum L. HOM05D001262 ORTHO05D001114 1.2e-06 57.8 60 55.0
ClCG07G012850 Citrullus lanatus HOM05D001262 ORTHO05D001114 1.2e-06 57.8 54 57.4
Eucgr.J03039 Eucalyptus grandis HOM05D001262 ORTHO05D001114 1.2e-06 57.8 49 61.2
FAN02G4112 Fragaria x ananassa HOM05D001262 ORTHO05D001114 1.2e-06 57.8 54 55.6
Glyma.13G363000 Glycine max HOM05D001262 ORTHO05D001114 1.2e-06 57.8 60 55.0
Glyma.15G010800 Glycine max HOM05D001262 ORTHO05D001114 1.2e-06 57.8 60 55.0
Nn8g39373 Nelumbo nucifera HOM05D001262 ORTHO05D001114 1.2e-06 57.8 54 53.7
Potri.018G030200 Populus trichocarpa HOM05D001262 ORTHO05D001114 1.2e-06 57.8 54 55.6
QL02p087480 Quercus lobata HOM05D001262 ORTHO05D001114 1.2e-06 57.8 51 58.8
GSVIVG01017241001 Vitis vinifera HOM05D001262 ORTHO05D001114 1.2e-06 57.8 54 55.6
Atru.chr1.3108 Acer truncatum HOM05D001262 ORTHO05D001114 1.6e-06 57.4 54 57.4
Cpa.g.sc10.220 Carica papaya HOM05D001262 ORTHO05D001114 1.6e-06 57.4 54 55.6
Cc04_g03960 Coffea canephora HOM05D001262 ORTHO05D001114 1.6e-06 57.4 54 53.7
FAN05G1538 Fragaria x ananassa HOM05D001262 ORTHO05D001114 1.6e-06 57.4 54 55.6
FAN09G3099 Fragaria x ananassa HOM05D001262 ORTHO05D001114 1.6e-06 57.4 54 55.6
Oeu033462.1 Olea europaea HOM05D001262 ORTHO05D001114 1.6e-06 57.4 54 55.6
Rhsim01G0077600 Rhododendron simsii HOM05D001262 ORTHO05D001114 1.6e-06 57.4 60 48.3
TPR.G31758 Trifolium pratense HOM05D001262 ORTHO05D001114 1.6e-06 57.4 54 51.9
TWI12G0346 Tripterygium wilfordii HOM05D001262 ORTHO05D001114 1.6e-06 57.4 54 55.6
TAR636G1807 Trochodendron aralioides HOM05D001262 ORTHO05D001114 1.6e-06 57.4 54 55.6
DCAR_003042 Daucus carota HOM05D001262 ORTHO05D001114 2.1e-06 57.0 56 53.6
Duzib168G0537 Durio zibethinus HOM05D001262 ORTHO05D001114 2.1e-06 57.0 54 55.6
Duzib235G0607 Durio zibethinus HOM05D001262 ORTHO05D001114 2.1e-06 57.0 54 55.6
MD15G1121100 Malus domestica HOM05D001262 ORTHO05D001114 2.1e-06 57.0 54 55.6
Psat5g300520 Pisum sativum HOM05D001262 ORTHO05D001114 2.1e-06 57.0 60 55.0
Potri.006G251100 Populus trichocarpa HOM05D001262 ORTHO05D001114 2.1e-06 57.0 54 55.6
Prupe.1G473700 Prunus persica HOM05D001262 ORTHO05D001114 2.1e-06 57.0 54 55.6
Solyc08g067160.3 Solanum lycopersicum HOM05D001262 ORTHO05D001114 2.1e-06 57.0 56 51.8
Sopen08g021100 Solanum pennellii HOM05D001262 ORTHO05D001114 2.1e-06 57.0 56 51.8
PGSC0003DMG400033649 Solanum tuberosum HOM05D001262 ORTHO05D001114 2.1e-06 57.0 56 51.8
Aqoxy7G02074 Aquilegia oxysepala HOM05D001262 ORTHO05D001114 2.7e-06 56.6 54 55.6
CSS0037505 Camellia sinensis var. sinensis HOM05D001262 ORTHO05D001114 2.7e-06 56.6 49 57.1
COL.COLO4_12885 Corchorus olitorius HOM05D001262 ORTHO05D001114 2.7e-06 56.6 50 58.0
Dinv41541 Davidia involucrata HOM05D001262 ORTHO05D001114 2.7e-06 56.6 54 55.6
FvH4_6g30430 Fragaria vesca HOM05D001262 ORTHO05D001114 2.7e-06 56.6 52 55.8
Gohir.A05G018800 Gossypium hirsutum HOM05D001262 ORTHO05D001114 2.7e-06 56.6 52 61.5
Gohir.A05G124700 Gossypium hirsutum HOM05D001262 ORTHO05D001114 2.7e-06 56.6 54 53.7
Gohir.D05G125700 Gossypium hirsutum HOM05D001262 ORTHO05D001114 2.7e-06 56.6 54 53.7
Gorai.009G129700 Gossypium raimondii HOM05D001262 ORTHO05D001114 2.7e-06 56.6 54 53.7
Thecc.06G074300 Theobroma cacao HOM05D001262 ORTHO05D001114 2.7e-06 56.6 41 63.4
vmacro20654 Vaccinium macrocarpon HOM05D001262 ORTHO05D001114 2.7e-06 56.6 49 57.1
arahy.Tifrunner.gnm1.ann1.ERFU6K Arachis hypogaea HOM05D001262 ORTHO05D001114 3.6e-06 56.2 50 54.0
arahy.Tifrunner.gnm1.ann1.S5HWQ6 Arachis hypogaea HOM05D001262 ORTHO05D001114 3.6e-06 56.2 50 54.0
Duzib187G0080 Durio zibethinus HOM05D001262 ORTHO05D001114 3.6e-06 56.2 49 55.1
Lj5C68T14 Lonicera japonica HOM05D001262 ORTHO05D001114 3.6e-06 56.2 57 52.6
Lj1g0018853 Lotus japonicus HOM05D001262 ORTHO05D001114 3.6e-06 56.2 46 63.0
Medtr2g103140 Medicago truncatula HOM05D001262 ORTHO05D001114 3.6e-06 56.2 60 53.3
Medtr3g107630 Medicago truncatula HOM05D001262 ORTHO05D001114 3.6e-06 56.2 54 50.0
PSO170G3226 Papaver somniferum HOM05D001262 ORTHO05D001114 3.6e-06 56.2 52 55.8
PSO455G0091 Papaver somniferum HOM05D001262 ORTHO05D001114 3.6e-06 56.2 52 55.8
Psat0ss3186g0320 Pisum sativum HOM05D001262 ORTHO05D001114 3.6e-06 56.2 60 53.3
PGR142G2359 Punica granatum HOM05D001262 ORTHO05D001114 3.6e-06 56.2 43 60.5
RcHm_v2.0_Chr2g0136771 Rosa chinensis HOM05D001262 ORTHO05D001114 3.6e-06 56.2 54 53.7
Sed0005386 Sechium edule HOM05D001262 ORTHO05D001114 3.6e-06 56.2 54 55.6
Thecc.09G149400 Theobroma cacao HOM05D001262 ORTHO05D001114 3.6e-06 56.2 50 56.0
CSS0028726 Camellia sinensis var. sinensis HOM05D001262 ORTHO05D001114 4.7e-06 55.8 54 55.6
AUR62011076 Chenopodium quinoa HOM05D001262 ORTHO05D001114 4.7e-06 55.8 54 50.0
Rhsim07G0148200 Rhododendron simsii HOM05D001262 ORTHO05D001114 4.7e-06 55.8 50 60.0
TAR625G1143 Trochodendron aralioides HOM05D001262 ORTHO05D001114 4.7e-06 55.8 48 60.4
EL10Ac8g18599 Beta vulgaris HOM05D001262 ORTHO05D001114 6.1e-06 55.5 169 29.0
EL10Ac9g21951 Beta vulgaris HOM05D001262 ORTHO05D001114 6.1e-06 55.5 48 58.3
Ca_15723_v3 Cicer arietinum L. HOM05D001262 ORTHO05D001114 6.1e-06 55.5 54 50.0
COL.COLO4_23980 Corchorus olitorius HOM05D001262 ORTHO05D001114 6.1e-06 55.5 46 58.7
Dinv11621 Davidia involucrata HOM05D001262 ORTHO05D001114 6.1e-06 55.5 54 51.9
ECA232G1741 Erigeron canadensis HOM05D001262 ORTHO05D001114 6.1e-06 55.5 123 32.5
Eucgr.F02550 Eucalyptus grandis HOM05D001262 ORTHO05D001114 6.1e-06 55.5 45 62.2
Lj8C624T9 Lonicera japonica HOM05D001262 ORTHO05D001114 6.1e-06 55.5 54 53.7
MD09G1221600 Malus domestica HOM05D001262 ORTHO05D001114 6.1e-06 55.5 52 55.8
Nitab4.5_0000151g0120 Nicotiana tabacum HOM05D001262 ORTHO05D001114 6.1e-06 55.5 54 55.6
Prupe.7G238500 Prunus persica HOM05D001262 ORTHO05D001114 6.1e-06 55.5 54 51.9
PGR031G0110 Punica granatum HOM05D001262 ORTHO05D001114 6.1e-06 55.5 49 63.3
Rhsim08G0216700 Rhododendron simsii HOM05D001262 ORTHO05D001114 6.1e-06 55.5 48 60.4
Sopen12g002840 Solanum pennellii HOM05D001262 ORTHO05D001114 6.1e-06 55.5 113 36.3
TWI63G1680 Tripterygium wilfordii HOM05D001262 ORTHO05D001114 6.1e-06 55.5 54 59.3
vmacro05193 Vaccinium macrocarpon HOM05D001262 ORTHO05D001114 6.1e-06 55.5 54 51.9
Actinidia22366 Actinidia chinensis HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 51.9
FvH4_1g03850 Fragaria vesca HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 51.9
FAN19G0437 Fragaria x ananassa HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 51.9
FAN23G1170 Fragaria x ananassa HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 51.9
FAN26G2167 Fragaria x ananassa HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 51.9
FAN28G0750 Fragaria x ananassa HOM05D001262 ORTHO05D001114 8.0e-06 55.1 51 54.9
Glyma.04G149900 Glycine max HOM05D001262 ORTHO05D001114 8.0e-06 55.1 49 59.2
Glyma.06G215700 Glycine max HOM05D001262 ORTHO05D001114 8.0e-06 55.1 49 59.2
Gorai.010G065500 Gossypium raimondii HOM05D001262 ORTHO05D001114 8.0e-06 55.1 43 60.5
HanXRQChr06g0180221 Helianthus annuus HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 55.6
HanXRQChr16g0500571 Helianthus annuus HOM05D001262 ORTHO05D001114 8.0e-06 55.1 123 32.5
Lsat_1_v5_gn_8_57300 Lactuca sativa HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 55.6
Lalb_Chr08g0234851 Lupinus albus HOM05D001262 ORTHO05D001114 8.0e-06 55.1 49 59.2
MD15G1177000 Malus domestica HOM05D001262 ORTHO05D001114 8.0e-06 55.1 51 54.9
Phvul.009G198700 Phaseolus vulgaris HOM05D001262 ORTHO05D001114 8.0e-06 55.1 41 63.4
Prupe.3G078700 Prunus persica HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 53.7
QL02p022448 Quercus lobata HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 51.9
RcHm_v2.0_Chr2g0089241 Rosa chinensis HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 51.9
RcHm_v2.0_Chr6g0298561 Rosa chinensis HOM05D001262 ORTHO05D001114 8.0e-06 55.1 49 55.1
Sed0015148 Sechium edule HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 55.6
SGA_v2.0_scaffold37G14788 Striga asiatica HOM05D001262 ORTHO05D001114 8.0e-06 55.1 54 53.7
TWI75G0422 Tripterygium wilfordii HOM05D001262 ORTHO05D001114 8.0e-06 55.1 52 55.8


User provided reference genes

Program Settings