Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 3412.1 1794 100.0
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2097.8 1758 63.4
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2082.4 1759 62.7
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2080.1 1745 63.4
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2023.8 1732 61.2
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1995.7 1717 61.6
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 1991.5 1757 60.1
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 1987.6 1733 60.2
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 1987.2 1726 61.0
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1986.8 1716 60.9
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1984.9 1735 61.2
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1978.4 1711 60.6
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1978.4 1724 60.3
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 1976.8 1496 65.2
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 1971.1 1760 60.4
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1955.6 1615 61.9
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1954.1 1752 59.1
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 1950.3 1715 59.8
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1945.2 1744 59.3
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1942.5 1725 60.1
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 1940.6 1790 59.0
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 1939.5 1718 59.8
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 1938.3 1773 58.0
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1936.8 1734 59.5
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1936.4 1771 59.0
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1934.5 1746 59.0
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 1932.5 1731 58.5
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1931.8 1724 59.5
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 1930.2 1783 58.8
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1926.4 1773 57.6
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1926.4 1773 57.6
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1922.5 1772 58.0
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1918.3 1715 59.5
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 1918.3 1740 58.2
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 1915.2 1745 58.5
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 1911.0 1726 58.6
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1909.8 1774 57.4
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 1909.0 1750 58.1
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 1907.1 1692 58.8
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1907.1 1793 56.6
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 1905.2 1764 57.6
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 1902.9 1755 58.3
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1900.6 1726 58.7
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 1899.4 1756 57.9
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1897.9 1721 57.8
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 1895.9 1701 58.6
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1887.1 1737 57.8
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 1880.9 1497 62.5
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 1878.6 1714 58.3
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 1878.2 1738 56.2
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1875.5 1760 57.1
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 1872.1 1708 58.3
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 1870.5 1697 58.6
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1864.4 1707 57.6
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1864.4 1721 56.2
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 1843.2 1777 56.1
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1837.0 1802 56.0
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1833.2 1805 55.4
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 1829.7 1759 56.7
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1824.3 1622 57.7
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 1823.5 1675 57.4
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1819.3 1736 56.0
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1815.0 1712 56.8
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 1814.3 1728 56.8
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1811.2 1891 53.6
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1810.4 1648 58.7
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1809.3 1721 56.4
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1809.3 1729 56.7
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1806.2 1740 57.0
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1805.0 1427 62.7
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1802.7 1721 56.2
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 1801.9 1751 55.9
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1799.3 1793 55.3
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1798.9 1705 55.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1797.7 1716 56.2
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 1791.9 1777 54.6
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1790.0 1733 56.0
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1788.9 1726 56.3
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1779.2 1680 56.5
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1779.2 1739 55.5
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1778.8 1729 55.6
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1771.5 1670 56.6
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1763.0 1732 55.1
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1751.9 1736 55.6
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1748.8 1690 55.7
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1742.6 1776 54.4
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1726.1 1309 62.6
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1723.4 1305 62.8
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1717.2 1710 54.6
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1696.0 1731 52.3
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1682.2 2126 47.5
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1629.4 1172 66.6
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1587.4 1748 50.6
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1570.4 1470 56.3
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1564.7 1693 52.1
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1540.4 1822 50.2
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1411.4 1439 53.7
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1406.3 1097 62.9
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1375.9 1058 62.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1331.2 1762 47.4
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1246.1 948 63.8
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1233.8 1379 51.1
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1142.9 1143 55.6
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1089.7 1100 54.8
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.6e-309 1067.0 1165 52.2
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 9.0e-289 998.0 923 56.4
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 7.4e-283 978.4 964 58.7
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 5.0e-247 859.4 753 57.4
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.4e-241 840.5 628 66.4
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 2.3e-231 807.4 686 56.7
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 2.5e-222 777.3 818 54.9
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 3.3e-222 776.9 613 62.3
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 4.7e-213 746.5 561 65.1
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 7.1e-209 732.6 847 43.4
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 4.3e-166 590.5 1604 30.5
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 6.3e-157 560.1 442 63.1
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.7e-149 535.4 375 70.4
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 9.1e-140 503.1 329 74.5
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 2.3e-111 408.7 441 46.5
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 3.2e-108 398.3 908 30.7
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 1.6e-107 396.0 555 50.8
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 7.3e-97 360.5 694 35.0
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.1e-95 356.7 214 72.9
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.4e-92 346.3 351 54.7
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.4e-87 329.7 247 61.1
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.4e-86 324.7 532 45.9
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 2.1e-83 315.8 647 41.7
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 4.0e-79 301.6 242 59.1
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.5e-62 246.5 190 61.6
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 3.5e-59 235.3 153 71.9
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.8e-55 223.0 178 57.9
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 4.1e-55 221.9 202 52.0
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.8e-47 196.4 189 51.9
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 2.1e-43 183.0 377 40.6
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.4e-42 180.3 114 78.1
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 4.8e-40 171.8 97 84.5
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 5.5e-36 158.3 129 52.7
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 9.7e-33 147.5 125 58.4
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.2e-30 140.6 243 38.7
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.6e-30 140.2 168 47.6
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 7.7e-30 137.9 435 35.9
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 4.4e-25 122.1 70 82.9
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 7.5e-25 121.3 91 64.8
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 5.4e-23 115.2 123 46.3
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.1e-20 107.5 72 76.4
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 5.5e-20 105.1 106 50.0
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.1e-19 103.2 61 75.4
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 2.1e-19 103.2 108 51.9
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 2.0e-17 96.7 94 50.0
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 5.7e-17 95.1 206 35.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.7e-16 93.6 56 78.6
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 4.1e-15 89.0 94 53.2
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 2.7e-14 86.3 54 72.2
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 1.1e-12 80.9 71 50.7
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.5e-12 80.5 47 83.0
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.9e-12 80.1 99 38.4
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.6e-11 77.0 53 62.3
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 4.7e-11 75.5 49 73.5
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.3e-10 73.2 58 55.2
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 1.2e-09 70.9 242 32.6
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 2.2e-08 66.6 43 62.8
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 2.2e-08 66.6 68 48.5
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 6.3e-08 65.1 63 54.0
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.1e-07 64.3 35 77.1
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 4.1e-07 62.4 124 29.0
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 5.4e-07 62.0 32 81.2
HanXRQChr13g0412891 Helianthus annuus HOM05D000041 ORTHO05D000452 9.2e-07 61.2 207 26.1
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 2.0e-06 60.1 58 50.0
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 7.8e-06 58.2 174 37.9


User provided reference genes

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