Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 5.3e-72 274.2 138 100.0
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 7.0e-48 194.1 118 81.4
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.2e-47 193.4 116 83.6
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.2e-47 193.4 116 83.6
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.6e-47 193.0 116 83.6
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.6e-47 193.0 123 78.9
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.0e-47 192.6 116 82.8
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 3.5e-47 191.8 114 84.2
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 4.5e-47 191.4 116 81.9
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 4.5e-47 191.4 116 83.6
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 5.9e-47 191.0 116 82.8
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 5.9e-47 191.0 116 81.9
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 5.9e-47 191.0 116 81.9
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 7.7e-47 190.7 116 83.6
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 7.7e-47 190.7 114 83.3
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 7.7e-47 190.7 116 82.8
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 7.7e-47 190.7 116 81.0
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 7.7e-47 190.7 116 81.0
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 7.7e-47 190.7 116 82.8
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.0e-46 190.3 119 81.5
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.3e-46 189.9 116 81.9
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.3e-46 189.9 116 81.9
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 1.3e-46 189.9 116 83.6
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.3e-46 189.9 116 83.6
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.3e-46 189.9 116 83.6
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.3e-46 189.9 116 83.6
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 1.3e-46 189.9 116 82.8
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.3e-46 189.9 116 81.9
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.7e-46 189.5 116 81.9
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.7e-46 189.5 116 81.9
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.7e-46 189.5 116 81.0
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 2.2e-46 189.1 116 81.0
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.2e-46 189.1 116 81.0
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 2.2e-46 189.1 116 81.9
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 2.2e-46 189.1 116 81.9
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 2.9e-46 188.7 116 81.0
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.9e-46 188.7 116 81.9
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 2.9e-46 188.7 115 81.7
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 2.9e-46 188.7 116 82.8
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 3.8e-46 188.3 116 81.9
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 3.8e-46 188.3 116 81.0
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 3.8e-46 188.3 116 82.8
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 3.8e-46 188.3 116 81.0
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 3.8e-46 188.3 116 81.9
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 5.0e-46 188.0 116 82.8
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 5.0e-46 188.0 116 81.0
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 5.0e-46 188.0 116 81.0
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 5.0e-46 188.0 116 82.8
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.5e-46 187.6 116 82.8
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 6.5e-46 187.6 114 80.7
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 8.5e-46 187.2 116 81.0
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 8.5e-46 187.2 134 72.4
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 8.5e-46 187.2 116 81.0
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 8.5e-46 187.2 116 80.2
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 8.5e-46 187.2 115 80.9
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.1e-45 186.8 115 80.0
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 1.1e-45 186.8 116 80.2
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.1e-45 186.8 116 80.2
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.5e-45 186.4 116 81.0
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.5e-45 186.4 116 80.2
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 1.9e-45 186.0 116 79.3
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 1.9e-45 186.0 116 81.0
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 1.9e-45 186.0 116 81.9
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.9e-45 186.0 112 81.2
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 2.5e-45 185.7 116 81.0
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 3.2e-45 185.3 116 80.2
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.2e-45 185.3 116 81.0
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.2e-45 185.3 116 81.0
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 3.2e-45 185.3 116 81.0
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 3.2e-45 185.3 116 80.2
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 3.2e-45 185.3 116 80.2
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 5.5e-45 184.5 116 80.2
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 7.2e-45 184.1 116 80.2
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 7.2e-45 184.1 116 80.2
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 9.4e-45 183.7 116 79.3
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 9.4e-45 183.7 116 80.2
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 9.4e-45 183.7 125 77.6
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 9.4e-45 183.7 116 79.3
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 1.2e-44 183.3 116 80.2
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 1.2e-44 183.3 116 80.2
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 1.2e-44 183.3 116 80.2
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.2e-44 183.3 111 82.9
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 1.6e-44 183.0 116 79.3
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.6e-44 183.0 116 80.2
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.6e-44 183.0 116 80.2
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 2.1e-44 182.6 115 79.1
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 2.7e-44 182.2 116 79.3
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 2.7e-44 182.2 116 79.3
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 2.7e-44 182.2 116 78.4
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 3.6e-44 181.8 116 79.3
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 3.6e-44 181.8 116 79.3
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 4.7e-44 181.4 116 78.4
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 4.7e-44 181.4 127 74.0
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 4.7e-44 181.4 114 78.9
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 4.7e-44 181.4 114 78.9
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 6.1e-44 181.0 110 80.0
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 8.0e-44 180.6 116 78.4
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 8.0e-44 180.6 116 79.3
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 8.0e-44 180.6 116 78.4
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 8.0e-44 180.6 114 78.1
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.4e-43 179.9 116 78.4
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 1.8e-43 179.5 116 78.4
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.8e-43 179.5 116 78.4
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 1.8e-43 179.5 116 78.4
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 1.8e-43 179.5 116 78.4
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 2.3e-43 179.1 116 77.6
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 3.0e-43 178.7 116 78.4
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 5.2e-43 177.9 115 77.4
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 1.2e-42 176.8 116 77.6
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.5e-42 176.4 111 82.0
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 2.2e-41 172.6 115 75.7
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 2.8e-41 172.2 115 74.8
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 1.1e-40 170.2 97 86.6
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 3.1e-40 168.7 115 75.7
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 1.6e-39 166.4 96 86.5
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 4.4e-34 148.3 115 68.7
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 2.2e-33 146.0 111 68.5
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 9.1e-32 140.6 107 67.3
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.1e-29 133.7 75 85.3
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.0e-26 122.9 114 52.6
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 4.4e-26 121.7 98 67.3
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 8.3e-25 117.5 93 66.7
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 5.0e-22 108.2 76 73.7
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 3.7e-17 92.0 58 79.3
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.3e-14 83.6 116 41.4
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 2.1e-12 76.3 40 87.5
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 8.1e-12 74.3 93 39.8
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 2.9e-09 65.9 39 79.5
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 5.4e-08 61.6 52 67.3


User provided reference genes

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