Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16341 Sequoiadendron giganteum HOM05D007367 ORTHO05D008866 4.8e-52 207.6 108 100.0
Gorai.008G218800 Gossypium raimondii HOM05D007367 ORTHO05D008866 4.4e-13 78.2 103 40.8
QL12p003620 Quercus lobata HOM05D007367 ORTHO05D008866 4.8e-12 74.7 102 45.1
QL93p0143_0020 Quercus lobata HOM05D007367 ORTHO05D008866 4.8e-12 74.7 102 45.1
Gohir.D12G204000 Gossypium hirsutum HOM05D007367 ORTHO05D008866 9.1e-11 70.5 95 40.0
Gohir.A12G201200 Gossypium hirsutum HOM05D007367 ORTHO05D008866 1.2e-10 70.1 95 40.0
Sabra01G0179900 Salix brachista HOM05D000929 ORTHO05D004813 1.6e-10 69.7 85 48.2
Potri.004G235300 Populus trichocarpa HOM05D007367 ORTHO05D008866 4.5e-10 68.2 102 39.2
HPP92_022724 Vanilla planifolia HOM05D007367 ORTHO05D008866 4.5e-10 68.2 95 41.1
Os08g0162500 Oryza sativa ssp. japonica HOM05D007367 ORTHO05D008866 5.9e-10 67.8 95 41.1
Sc07g0008020 Simmondsia chinensis HOM05D007367 ORTHO05D008866 1.7e-09 66.2 95 38.9
Prupe.5G013300 Prunus persica HOM05D007367 ORTHO05D008866 5.0e-09 64.7 101 38.6
PSO675G5685 Papaver somniferum HOM05D007367 ORTHO05D008866 1.1e-08 63.5 64 48.4
RcHm_v2.0_Chr7g0215331 Rosa chinensis HOM05D007367 ORTHO05D008866 1.1e-08 63.5 95 38.9
MD03G1130300 Malus domestica HOM05D007367 ORTHO05D008866 1.5e-08 63.2 101 38.6
Hund14309 Selenicereus undatus HOM05D007367 ORTHO05D008866 1.9e-08 62.8 93 36.6
FvH4_5g25140 Fragaria vesca HOM05D007367 ORTHO05D008866 2.5e-08 62.4 95 37.9
PSO063G4690 Papaver somniferum HOM05D007367 ORTHO05D008866 3.2e-08 62.0 85 43.5
GSVIVG01036886001 Vitis vinifera HOM05D007367 ORTHO05D008866 3.2e-08 62.0 103 38.8
Ciclev10012881m.g Citrus clementina HOM05D007367 ORTHO05D008866 4.2e-08 61.6 95 41.1
FAN13G0070 Fragaria x ananassa HOM05D007367 ORTHO05D008866 4.2e-08 61.6 95 36.8
Thecc.03G320300 Theobroma cacao HOM05D007367 ORTHO05D008866 4.2e-08 61.6 80 41.2
Aqoxy7G01946 Aquilegia oxysepala HOM05D000773 ORTHO05D008866 5.5e-08 61.2 97 36.1
ClCG07G011120 Citrullus lanatus HOM05D007367 ORTHO05D008866 5.5e-08 61.2 95 37.9
FAN08G2564 Fragaria x ananassa HOM05D007367 ORTHO05D008866 5.5e-08 61.2 95 37.9
Sp7g17960 Schrenkiella parvula HOM05D007367 ORTHO05D008866 5.5e-08 61.2 98 35.7
TAR374G1177 Trochodendron aralioides HOM05D007367 ORTHO05D008866 5.5e-08 61.2 86 40.7
Zm00001eb415480 Zea mays HOM05D007367 ORTHO05D008866 9.4e-08 60.5 93 36.6
CANSAT01G1692 Cannabis sativa HOM05D007367 ORTHO05D008866 1.2e-07 60.1 102 38.2
CDE02G0575 Ceratophyllum demersum HOM05D007367 ORTHO05D008866 1.2e-07 60.1 81 42.0
MELO3C016218.2 Cucumis melo HOM05D007367 ORTHO05D008866 1.2e-07 60.1 95 37.9
ECA246G3716 Erigeron canadensis HOM05D007367 ORTHO05D008866 1.2e-07 60.1 98 35.7
Lalb_Chr16g0391641 Lupinus albus HOM05D007367 ORTHO05D008866 1.6e-07 59.7 101 31.7
Cfa012305 Carpinus fangiana HOM05D007367 ORTHO05D008866 2.1e-07 59.3 102 38.2
CDE11G0580 Ceratophyllum demersum HOM05D007367 ORTHO05D008866 2.1e-07 59.3 81 42.0
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 2.1e-07 59.3 100 37.0
THA.LOC104811080 Tarenaya hassleriana HOM05D007367 ORTHO05D008866 2.7e-07 58.9 95 37.9
Duzib068G0439 Durio zibethinus HOM05D007367 ORTHO05D008866 3.6e-07 58.5 86 39.5
Glyma.16G123600 Glycine max HOM05D007367 ORTHO05D008866 3.6e-07 58.5 102 30.4
TWI38G0281 Tripterygium wilfordii HOM05D007367 ORTHO05D008866 3.6e-07 58.5 89 39.3
Cc08_g05930 Coffea canephora HOM05D007367 ORTHO05D008866 4.7e-07 58.2 95 34.7
Glyma.02G045600 Glycine max HOM05D007367 ORTHO05D008866 4.7e-07 58.2 102 30.4
HanXRQChr02g0034081 Helianthus annuus HOM05D007367 ORTHO05D008866 6.1e-07 57.8 95 36.8
CARHR226150 Cardamine hirsuta HOM05D007367 ORTHO05D008866 8.0e-07 57.4 95 36.8
CAN.G947.33 Capsicum annuum HOM05D007367 ORTHO05D008866 1.0e-06 57.0 89 39.3
CiPaw.11G074200 Carya illinoinensis HOM05D007367 ORTHO05D008866 1.0e-06 57.0 105 36.2
Lj4g0011102 Lotus japonicus HOM05D007367 ORTHO05D008866 1.0e-06 57.0 95 32.6
Solyc12g096170.2 Solanum lycopersicum HOM05D007367 ORTHO05D008866 1.0e-06 57.0 89 37.1
TPR.G19504 Trifolium pratense HOM05D007367 ORTHO05D008866 1.0e-06 57.0 102 28.4
MSTRG.25748 Avicennia marina HOM05D007367 ORTHO05D008866 1.4e-06 56.6 98 35.7
Dinv37431 Davidia involucrata HOM05D007367 ORTHO05D008866 1.4e-06 56.6 103 36.9
Nn1g01985 Nelumbo nucifera HOM05D007367 ORTHO05D008866 1.8e-06 56.2 100 34.0
VMungo0251G1728 Vigna mungo HOM05D007367 ORTHO05D008866 1.8e-06 56.2 101 30.7
COL.COLO4_16748 Corchorus olitorius HOM05D007367 ORTHO05D008866 2.3e-06 55.8 95 34.7
Peaxi162Scf00876g00431 Petunia axillaris HOM05D007367 ORTHO05D008866 4.0e-06 55.1 95 36.8
Sed0007825 Sechium edule HOM05D007367 ORTHO05D008866 5.2e-06 54.7 95 35.8
Aa31LG6G1950 Aethionema arabicum HOM05D007367 ORTHO05D008866 6.7e-06 54.3 104 32.7
arahy.Tifrunner.gnm1.ann1.H9MF1T Arachis hypogaea HOM05D007367 ORTHO05D008866 6.7e-06 54.3 102 31.4
EL10Ac8g19394 Beta vulgaris HOM05D007367 ORTHO05D008866 6.7e-06 54.3 85 35.3
SGA_v2.0_scaffold89G27372 Striga asiatica HOM05D007367 ORTHO05D008866 8.8e-06 53.9 98 35.7


User provided reference genes

Program Settings